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272 results for “Forest biodiversity”
Supplementary material 1 from: Riley Peterson KN, Browne RA, Erwin TL (2021) Carabid beetle (Coleoptera, Carabidae) richness, diversity, and community structure in the understory of temporarily flooded and non-flooded Amazonian forests of Ecuador. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 831-876. https://doi.org/10.3897/zookeys.1044.62340
Geolocation data for sampling sites at Tiputini Biodiversity Station
Figure A1 from: Riley Peterson KN, Browne RA, Erwin TL (2021) Carabid beetle (Coleoptera, Carabidae) richness, diversity, and community structure in the understory of temporarily flooded and non-flooded Amazonian forests of Ecuador. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 831-876. https://doi.org/10.3897/zookeys.1044.62340
Figure A1 Water height for the Tiputini River at Tiputini Biodiversity Station, Ecuador. (A) Monthly values represent overall mean river height and the mean maxima and minima based on data from 2009–2014 (B) three years before and after the sampling period for this study. Monthly river height values during the sampling periods, 2011 (B) and 2012 (C) for mean river height in addition to water height maxima and minima.
Figure 5 from: Riley Peterson KN, Browne RA, Erwin TL (2021) Carabid beetle (Coleoptera, Carabidae) richness, diversity, and community structure in the understory of temporarily flooded and non-flooded Amazonian forests of Ecuador. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 831-876. https://doi.org/10.3897/zookeys.1044.62340
Figure 5 Number of Cicindelini (tiger beetles) collected from FP and TF forests. Significantly more tiger beetle individuals were collected in TF forest (P = 0.011).
Supplementary material 3 from: Ariza GM, Jácome J, Esquivel HE, Kotze DJ (2021) Early successional dynamics of ground beetles (Coleoptera, Carabidae) in the tropical dry forest ecosystem in Colombia. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 877-906. https://doi.org/10.3897/zookeys.1044.59475
Table S3
Figure 1 from: Ariza GM, Jácome J, Esquivel HE, Kotze DJ (2021) Early successional dynamics of ground beetles (Coleoptera, Carabidae) in the tropical dry forest ecosystem in Colombia. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 877-906. https://doi.org/10.3897/zookeys.1044.59475
Figure 1 Geographic location of the study sites A the location of Armero and Cambao in Colombia B Armero C Cambao. Abbreviations: F = forest, ES = early succession, P = pasture. Maps courtesy of DIVA-GIS 7.5 and Google Earth Image 2020. For more details, see the online map at https://www.google.com/maps/d/u/3/edit?mid=1le-kQOQFh8RumUibWP3D8ghtxVvGM-eF&usp=sharing
Figure 3 from: Ariza GM, Jácome J, Esquivel HE, Kotze DJ (2021) Early successional dynamics of ground beetles (Coleoptera, Carabidae) in the tropical dry forest ecosystem in Colombia. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 877-906. https://doi.org/10.3897/zookeys.1044.59475
Figure 3 Non-metric multidimensional scaling ordination of carabid beetle assemblages at Armero (Colombia). Wet and dry season catches were analyzed and plotted separately. The catch in five of the ten forest samples returned zero individuals, and were removed from the analysis. The ellipses indicate 1 SD of the weighted average of site scores of forest (dotted line), early succession (long dashed line), and pasture (solid line). Abbreviations of the significant environmental vectors: soiltemp = soil temperature, airtemp = air temperature, litterdepth = leaf litter depth (cm), canopy = percentage canopy cover. Stress value 0.06.
Supplementary material 2 from: Ariza GM, Jácome J, Esquivel HE, Kotze DJ (2021) Early successional dynamics of ground beetles (Coleoptera, Carabidae) in the tropical dry forest ecosystem in Colombia. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 877-906. https://doi.org/10.3897/zookeys.1044.59475
Table S2
Figure 5 from: Ariza GM, Jácome J, Esquivel HE, Kotze DJ (2021) Early successional dynamics of ground beetles (Coleoptera, Carabidae) in the tropical dry forest ecosystem in Colombia. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 877-906. https://doi.org/10.3897/zookeys.1044.59475
Figure 5 Generalized Linear Mixed Model predicted (mean ± SE) number of individuals of Calosoma alternans, genus Megacephala and the remaining carabid beetle species collected from Armero and Cambao combined across the three habitat types (forest, early succession, and pasture). Note different y-axis scales.
Supplementary material 1 from: Ariza GM, Jácome J, Esquivel HE, Kotze DJ (2021) Early successional dynamics of ground beetles (Coleoptera, Carabidae) in the tropical dry forest ecosystem in Colombia. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 877-906. https://doi.org/10.3897/zookeys.1044.59475
Table S1
Figure 4 from: Ariza GM, Jácome J, Esquivel HE, Kotze DJ (2021) Early successional dynamics of ground beetles (Coleoptera, Carabidae) in the tropical dry forest ecosystem in Colombia. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 877-906. https://doi.org/10.3897/zookeys.1044.59475
Figure 4 Generalized Linear Model predicted (mean ± SE) number of individuals of Calosoma alternans and the remaining carabid beetle species collected from Armero across the three habitat types (forest, early succession, and pasture). Note different y-axis scales.
Figure 2 from: Ariza GM, Jácome J, Esquivel HE, Kotze DJ (2021) Early successional dynamics of ground beetles (Coleoptera, Carabidae) in the tropical dry forest ecosystem in Colombia. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 877-906. https://doi.org/10.3897/zookeys.1044.59475
Figure 2 Rarefaction and extrapolation richness curves for carabid beetles from Armero (A–C), and Armero and Cambao combined (D–F) A, D comparison of richness between habitats using sample-size-based curves B, E sample completeness curves C, F comparison of richness using coverage-based curves. Abbreviations: F = forest, ES = early succession, P = pasture. Numbers in parentheses denote sample sizes and the observed Hill number (q = 0) (A, D), sample size and the estimated sample coverage (B, E), and the estimated sample coverage and the observed Hill number (q = 0) (C, F), respectively.
Figure 1 from: Dole SA, Hulcr J, Cognato AI (2021) Species-rich bark and ambrosia beetle fauna (Coleoptera, Curculionidae, Scolytinae) of the Ecuadorian Amazonian Forest Canopy. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 797-813. https://doi.org/10.3897/zookeys.1044.57849
Figure 1 A species accumulation curves for Onkone Gare B species accumulation curves for Tiputini C species richness estimators for Onkone Gare D species richness estimators for Tiputini E species accumulation curves for both sites combined F species richness estimators for both sites combined.
Natural disturbance impacts on trade-offs and co-benefits of forest biodiversity and carbon
<p>With accelerating environmental change, understanding the influence of forest disturbances and trade-offs between biodiversity and carbon dynamics is of high socio-economic importance. Most studies, however, have assessed immediate or short-term effects of disturbance, while long-term impacts remain poorly understood. Here, using a tree-ring-based approach, we modelled the effect of 250 years of disturbances on present-day biodiversity indicators and carbon dynamics in well-preserved European temperate primary forests. Our results indicated that disturbance legacies spanning centuries shaped contemporary forest co-benefits and trade-offs, with contrasting, local-scale effects. In the short-term, disturbances enhanced carbon sequestration, reaching maximum rates within a comparatively narrow post-disturbance window (up to 50 years). Concurrently, disturbance diminished aboveground carbon storage, which gradually returned to peak levels over centuries. Temporal patterns in biodiversity potential were bimodal; the first maximum coincided with the short-term post-disturbance carbon sequestration peak, and the second occurred during periods of maximum carbon storage in complex old growth. However, despite fluctuating local-scale trade-offs, forest biodiversity and carbon storage remained stable across the broader study region. These findings underscore the dynamic interdependencies of forest processes, and highlight the necessity of large-scale conservation programs to effectively promote both biodiversity and long-term carbon storage, particularly given the accelerating global biodiversity and climate crises.</p>
Assessment of acoustic indices for monitoring phylogenetic and temporal patterns of biodiversity in tropical forests
<b>Description: </b><p>Acostic recordings of bird calls at SAFE in 2014. Four solar-powered Wildlife Song Meter SM3 bioacoustic recorders (Wildlife Acoustics Inc., Concord,<br>MA, USA) were deployed with omni-directional microphones (sensitivity: 20Hz - 20kHz). No exact locations recorded.</p><p><b>Project: </b>This dataset was collected as part of the following SAFE research project: <a href="https://www.safeproject.net/projects/project_view/175"><b>Continuous bio-acoustic monitoring (2020 extension)</b></a></p><p><b>XML metadata: </b>GEMINI compliant metadata for this dataset is available <a href="https://www.safeproject.net/datasets/xml_metadata?id=7740620">here</a></p><p><b>Files: </b>This dataset consists of 2 files: Trigg_safedata.xlsx, CLIPS.zip</p><p><b>Trigg_safedata.xlsx</b></p><p>This file contains dataset metadata and 1 data tables:</p><ol><li><p><b>Data</b> (described in worksheet Data)</p><p>Description: excel sheet with clips listed and birds identified</p><p>Number of fields: 7</p><p>Number of data rows: 837</p><p>Fields: </p><ul><li><b>FileNumber</b>: The audio files, which are labelled 1 to 120 (Field type: id)</li><li><b>StartTime</b>: approximate time when the species call began. (Field type: numeric)</li><li><b>EndTime</b>: approximate end time of the call. (Field type: numeric)</li><li><b>original_taxon_names</b>: species that can be heard in the recording. Original version as entered in to worksheet (Field type: comments)</li><li><b>Species</b>: species that can be heard in the recording. Corrected name, spelling mistakes and excess spaces removed etc. (Field type: taxa)</li><li><b>CallType</b>: Type of sound being identified (Field type: categorical)</li><li><b>IdCertainty</b>: Degree of certainty (Field type: categorical)</li></ul></li></ol><p><b>CLIPS.zip</b></p><p>Description: Zip file containing original audio clips used to generate these data</p><p><b>Date range: </b>2015-04-01 to 2015-06-30</p><p><b>Latitudinal extent: </b>4.6000 to 4.8000</p><p><b>Longitudinal extent: </b>117.5000 to 117.7000</p><p><b>Taxonomic coverage: </b><br> All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets.</p><div> -  Animalia <br> -  -  Chordata <br> -  -  -  Mammalia <br> -  -  -  -  Primates <br> -  -  -  -  -  Hylobatidae <br> -  -  -  -  -  -  <i>Hylobates</i> <br> -  -  -  -  -  -  -  <i>Hylobates funereus</i> <br> -  -  -  Aves <br> -  -  -  -  Galliformes <br> -  -  -  -  -  Phasianidae <br> -  -  -  -  -  -  <i>Argusianus</i> <br> -  -  -  -  -  -  -  <i>Argusianus argus</i> <br> -  -  -  -  Bucerotiformes <br> -  -  -  -  -  Bucerotidae <br> -  -  -  -  -  -  <i>Anorrhinus</i> <br> -  -  -  -  -  -  -  <i>Anorrhinus galeritus</i> <br> -  -  -  -  -  -  <i>Buceros</i> <br> -  -  -  -  -  -  -  <i>Buceros rhinoceros</i> <br> -  -  -  -  -  -  <i>Rhinoplax</i> <br> -  -  -  -  -  -  -  <i>Rhinoplax vigil</i> <br> -  -  -  -  Psittaciformes <br> -  -  -  -  -  Psittacidae <br> -  -  -  -  -  -  <i>Loriculus</i> <br> -  -  -  -  -  -  -  <i>Loriculus galgulus</i> <br> -  -  -  -  Passeriformes <br> -  -  -  -  -  Cisticolidae <br> -  -  -  -  -  -  <i>Orthotomus</i> <br> -  -  -  -  -  -  -  <i>Orthotomus ruficeps</i> <br> -  -  -  -  -  -  -  <i>Orthotomus atrogularis</i> <br> -  -  -  -  -  -  -  <i>Orthotomus sericeus</i> <br> -  -  -  -  -  -  <i>Prinia</i> <br> -  -  -  -  -  -  -  <i>Prinia flaviventris</i> <br> -  -  -  -  -  Chloropseidae <br> -  -  -  -  -  -  <i>Chloropsis</i> <br> -  -  -  -  -  -  -  <i>Chloropsis cyanopogon</i> <br> -  -  -  -  -  Aegithinidae <br> -  -  -  -  -  -  <i>Aegithina</i> <br> -  -  -  -  -  -  -  <i>Aegithina viridissima</i> <br> -  -  -  -  -  Pycnonotidae <br> -  -  -  -  -  -  <i>Pycnonotus</i> <br> -  -  -  -  -  -  -  <i>Pycnonotus atriceps</i> <br> -  -  -  -  -  -  -  <i>Pycnonotus simplex</i> <br> -  -  -  -  -  -  -  <i>Pycnonotus erythropthalmos</i> <br> -  -  -  -  -  -  -  <i>Pycnonotus goiavier</i> <br> -  -  -  -  -  -  <i>Alophoixus</i> <br> -  -  -  -  -  -  -  <i>Alophoixus bres</i> <br> -  -  -  -  -  -  <i>Iole</i> <br> -  -  -  -  -  -  -  <i>Iole olivacea</i> <br> -  -  -  -  -  Dicaeidae <br> -  -  -  -  -  -  <i>Prionochilus</i> <br> -  -  -  -  -  -  -  <i>Prionochilus xanthopygius</i> <br> -  -  -  -  -  -  <i>Dicaeum</i> <br> -  -  -  -  -  -  -  <i>Dicaeum trigonostigma</i> <br> -  -  -  -  -  Monarchidae <br> -  -  -  -  -  -  <i>Hypothymis</i> <br> -  -  -  -  -  -  -  <i>Hypothymis azurea</i> <br> -  -  -  -  -  -  <i>Rhipidura</i> <br> -  -  -  -  -  -  -  <i>Rhipidura javanica</i> <br> -  -  -  -  -  Irenidae <br> -  -  -  -  -  -  <i>Irena</i> <br> -  -  -  -  -  -  -  <i>Irena puella</i> <br> -  -  -  -  -  Muscicapidae <br> -  -  -  -  -  -  <i>Trichixos</i> <br> -  -  -  -  -  -  -  <i>Trichixos pyrropygus</i> <br> -  -  -  -  -  Tephrodornithidae <br> -  -  -  -  -  -  <i>Hemipus</i> <br> -  -  -  -  -  -  -  <i>Hemipus picatus</i> <br> -  -  -  -  -  -  -  <i>Hemipus hirundinaceus</i> <br> -  -  -  -  -  Pellorneidae <br> -  -  -  -  -  -  <i>Kenopia</i> <br> -  -  -  -  -  -  -  <i>Kenopia striata</i> <br> -  -  -  -  -  -  <i>Pellorneum</i> <br> -  -  -  -  -  -  -  <i>Pellorneum capistratum</i> <br> -  -  -  -  -  -  -  <i>Pellorneum bicolor</i> <br> -  -  -  -  -  -  <i>Malacopteron</i> <br> -  -  -  -  -  -  -  <i>Malacopteron affine</i> <br> -  -  -  -  -  -  <i>Malacocincla</i> <br> -  -  -  -  -  -  -  <i>Malacocincla malaccensis</i> <br> -  -  -  -  -  -  <i>Alcippe</i> <br> -  -  -  -  -  -  -  <i>Alcippe brunneicauda</i> <br> -  -  -  -  -  Corvidae <br> -  -  -  -  -  -  <i>Corvus</i> <br> -  -  -  -  -  -  -  <i>Corvus enca</i> <br> -  -  -  -  -  Acanthizidae <br> -  -  -  -  -  -  <i>Gerygone</i> <br> -  -  -  -  -  -  -  <i>Gerygone sulphurea</i> <br> -  -  -  -  -  Timaliidae <br> -  -  -  -  -  -  <i>Cyanoderma</i> <br> -  -  -  -  -  -  -  <i>Cyanoderma erythropterum</i> <br> -  -  -  -  -  -  -  <i>Cyanoderma rufifrons</i> <br> -  -  -  -  -  -  <i>Mixornis</i> <br> -  -  -  -  -  -  -  <i>Mixornis bornensis</i> <br> -  -  -  -  -  -  <i>Macronus</i> <br> -  -  -  -  -  -  -  <i>Macronus ptilosus</i> <br> -  -  -  -  -  -  <i>Stachyris</i> <br> -  -  -  -  -  -  -  <i>Stachyris maculata</i> <br> -  -  -  -  -  -  -  <i>Stachyris poliocephala</i> <br> -  -  -  -  -  -  <i>Pomatorhinus</i> <br> -  -  -  -  -  -  -  <i>Pomatorhinus montanus</i> <br> -  -  -  -  -  Nectariniidae <br> -  -  -  -  -  -  <i>Anthreptes</i> <br> -  -  -  -  -  -  -  <i>Anthreptes simplex</i> <br> -  -  -  -  -  -  <i>Arachnothera</i> <br> -  -  -  -  -  -  -  <i>Arachnothera longirostra</i> <br> -  -  -  -  -  -  -  <i>Arachnothera affinis</i> <br> -  -  -  -  -  Eurylaimidae <br> -  -  -  -  -  -  <i>Eurylaimus</i> <br> -  -  -  -  -  -  -  <i>Eurylaimus ochromalus</i> <br> -  -  -  -  Piciformes <br> -  -  -  -  -  Ramphastidae <br> -  -  -  -  -  -  <i>Megalaima</i> <br> -  -  -  -  -  -  -  <i>Megalaima australis</i> <br> -  -  -  -  -  -  -  -  <i>Megalaima australis duvaucelii</i> (as homotypic_synonym: <i>Psilopogon duvaucelii</i>)<br> -  -  -  -  -  Picidae <br> -  -  -  -  -  -  <i>Meiglyptes</i> <br> -  -  -  -  -  -  -  <i>Meiglyptes tukki</i> <br> -  -  -  -  -  -  <i>Dinopium</i> <br> -  -  -  -  -  -  -  <i>Dinopium rafflesii</i> <br> -  -  -  -  -  -  <i>Blythipicus</i> <br> -  -  -  -  -  -  -  <i>Blythipicus rubiginosus</i> <br> -  -  -  -  -  -  <i>Mulleripicus</i> <br> -  -  -  -  -  -  -  <i>Mulleripicus pulverulentus</i> <br> -  -  -  -  Cuculiformes <br> -  -  -  -  -  Cuculidae <br> -  -  -  -  -  -  <i>Cacomantis</i> <br> -  -  -  -  -  -  -  <i>Cacomantis sonneratii</i> <br> -  -  -  -  -  -  -  <i>Cacomantis merulinus</i> <br> -  -  -  -  -  -  <i>Rhinortha</i> <br> -  -  -  -  -  -  -  <i>Rhinortha chlorophaea</i> <br> -  -  -  -  -  -  <i>Cuculus</i> <br> -  -  -  -  -  -  -  <i>Cuculus vagans</i> <br> -  -  -  -  -  -  <i>Centropus</i> <br> -  -  -  -  -  -  -  <i>Centropus sinensis</i> <br> -  -  -  -  Columbiformes <br> -  -  -  -  -  Columbidae <br> -  -  -  -  -  -  <i>Chalcophaps</i> <br> -  -  -  -  -  -  -  <i>Chalcophaps indica</i> <br></div><p></p>
Natural disturbance impacts on trade-offs and co-benefits of forest biodiversity and carbon
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Direct and indirect disturbance impacts on forest biodiversity
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Data from: The value of biodiversity for the functioning of tropical forests: insurance effects during the first decade of the Sabah biodiversity experiment
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Data from: Biodiversity in species, traits and structure determines carbon stocks and uptake in tropical forests
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Data from: Impacts of dead-wood manipulation on the biodiversity of temperate and boreal forests - A systematic review
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Associations between socio-environmental factors and landscape-scale biodiversity recovery in naturally regenerating tropical and subtropical forests
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.