Find research datasets worth reusing

opencc-by-4.0Dec 2022View details →

Framework for Assessing Changes To Sea-level (FACTS) Module Data

Input module data sets from the Framework for Assessing Changes To Sea-level. These files should be installed in the modules-data/ directory. See https://github.com/radical-collaboration/facts for more information.

opencc-by-4.0Jan 2023View details →

The Thousand-Pulsar-Array programme on MeerKAT - VIII. The subpulse modulation of 1198 pulsars

These datasets and document are online appendices beyond those provided in the main journal manuscript "The Thousand-Pulsar-Array programme on MeerKAT - VIII. The subpulse modulation of 1198 pulsars" by Song et al. published in Monthly Notices of the Royal Astronomical Society in 2023. File supplementary_appendices.pdf contains supplementary online appendices. Files  appendix_a1_table_observationalparameters.pdf and appendix_a2_table_spectralmeasurements.pdf are two tables summarising the observational related parameters, and subpulse modulation measurements respectively.   File appendix_spectralfigures.pdf contains spectral figures for all sources. Zip files (RA*_spectralfigures.zip) contain  original and shuffled spectral figures for individual pulsars within a specific RA range.

opencc-by-4.0Jan 2023View details →

Modulating the Surface Properties of Lithium Niobate Nanoparticles by Multifunctional Coatings Using Water-in-Oil Microemulsions

Raw data associated to the study entitled Modulating the Surface Properties of Lithium Niobate Nanoparticles by Multifunctional Coatings Using Water-in-Oil Microemulsions. Metadata file DLS measurements FTIR characterization Labbook NMR characterization TEM and EDX analysis XRD measurements

opencc-by-4.0Feb 2023View details →

Degradation rates of GrInHy2.0 HTE modules

Average degradation rates in mOhm*cm²/kh of the SOEC modules used in GrInHy2.0 plant, averaged over the runtime of the respective modules. There are 8 modules. Index "0" refers to the modules with initial stacks that were exchanges due to quality issues. Index "1" refers to replacement stacks with quality approved stacks. Runtime of initial stacks was 600 ... 9,000 h, while replacement stacks runtime was 5,000 ... 11,000 h.

opencc-by-4.0Feb 2023View details →

Colossal optical anisotropy from atomic-scale modulations: manuscript data

<ul> <li>Relevant data files for Main Text figures of "Colossal optical anisotropy from atomic-scale modulations"</li> <li>Relevant data files for Supplementary Information figures of "Colossal optical anisotropy from atomic-scale modulations"</li> </ul>

opencc-by-4.0Mar 2023View details →

Dissipative Solitons and Switching Waves in Dispersion-Modulated Kerr Cavities

Execution tested with Matlab 2020a or newer on Windows. Unzip folder to access files. Contact miles.anderson@epfl.ch for any serious questions on the contents. All matlab code remains under copyright by the authors: Miles Anderson and Tobias J. Kippenberg, and is provided solely to be used to reproduce the figures of the aforementioned paper and example simulation results pertaining to the paper. Figure data and generation code is found in "Figure Data\Scripts and Data". Run matlab scripts in the given folder to generate the figures. Other relevant figures containing data is found in "\Other". Seven example matlab simulation scripts are found in "Simulation Example Code". <ul> <li>Running 'lle_cavity_v4_CW_FI_Low2' models CW Faraday Instability appearance from Figure 3, in dimensionless units.</li> <li>Running 'lle_cavity_v4_Soliton_FI_1' models a dissipative soliton with Kelly sidebands or higher-order dispersive waves in dispersion modulated cavity, from Figure 4, in dimensionless units.</li> <li>Running 'lle_cavity_v4_SW_FI_Low2' models a switching wave with FI-motivated satellites in dispersion modulated cavity, from Figure 7, in dimensionless units.</li> <li>Running 'lle_SiNcavity_v4_SW_FaradaySatellite_F9C15R6_1_1b' (or just '1') uses experimental data to reproduce the experiment for the pulse-driven switching wave according to the LLE, the results of which are shown in Figure 7(f) of the main paper, and Figure S5 of the supplementary information.</li> <li>Running 'lle_SiNcavity_v4_SW_FaradaySatellite_F2C15R5_2_3' (and also '3_1') uses experimental data to reproduce the experiment for the pulse-driven switching wave according to the LLE, the results of which are shown in Figure 8 and 9 of the main paper, and Figure S6 of the supplementary information.</li> <li>Running 'lle_SiNcavity_v4_SolitonHDW_F1C16R6TM_5_s2' uses experimental data to reproduce the experiment as seen in Figure 6 for the pulse-driven soliton according to the LLE, results of which are shown in Figure S9 of the supplementary information.</li> </ul> The script parameters may be modified to find results under different driving conditions and over different time periods and sampling rates as required. M. Anderson apologises in advance for the complexity, readability, and optimisation of the script. This work was supported by Contract No. D18AC00032 (DRINQS) from the Defense Advanced Research Projects Agency (DARPA). This material is based upon work supported by the Air Force Office of Scientific Research under Grant No. FA9550-19-1-0250. This work was further supported by the European Union’s Horizon 2020 Program for Research and Innovation under Grant No. 812818 (Marie Skłodowska-Curie ETN MICROCOMB) and by the Swiss National Science Foundation under Grant Agreement No. 192293.

opencc-zeroMar 2023View details →

Fungicides Cuprozin Progress and SWITCH Modulate Primary and Specialized Metabolites of Strawberry Fruits

Numerous pesticides, including fungicides, are applied every year to crop plants. However, such application may affect the plant metabolism and thereby impact crop quality. Strawberry is an economically important crop, but the fruits are highly susceptible, especially to fungal diseases. In the present study, the effects of two fungicides on primary and specialized metabolites determining the fruit aroma were tested in two strawberry cultivars and the wild strawberry. Fruit extracts were analyzed using HPLC (amino acids), GC-MS (organic acids, sugars, flavor metabolites) and photometric quantification (total phenolics). Various metabolites were either significantly higher or lower in fruits of plants exposed to fungicides compared to those of control plants, with differences between strawberry cultivars and species, as well as used fungicides. Given the various changes in metabolites in response to the treatments, the taste and quality of the strawberries may pronouncedly change when plants are treated with fungicides.

opencc-by-4.0Apr 2023View details →

Dataset of "Single-Pixel Imaging in Space and Time with Optically Modulated Free Electrons"

This dataset contains the simulated spatial images and temporal profiles reconstructed using the Electron Single-Pixel Imaging where free-electrons are shaped by light pulses. The reconstruction is performed using two different basis (Hadamard and Fourier) and for three different light frequency cutoffs. Some of these data and images are published in https://doi.org/10.1021/acsphotonics.3c00047.

opencc-zeroApr 2023View details →

Code and initial metapopulation data for model construction and simulation analyses for: Genetic rescue from protected areas is modulated by migration, hunting rate and timing of harvest

Migrants from protected areas may buffer the risk of harvest-induced evolutionary changes in exploited populations that face strong selective harvest pressures in both terrestrial and marine ecosystems. Understanding the mechanisms favouring genetic rescue through migration could help ensure sustainable harvest outside protected areas and conserve genetic diversity inside those areas. We developed a stochastic individual-based metapopulation model to evaluate the potential for migration from protected areas to mitigate the evolutionary consequences of selective harvest. We parameterized the model with detailed data from individual monitoring of two populations of bighorn sheep subjected to trophy hunting. We tracked horn length through time in a metapopulation including large protected and trophy-hunted populations connected through male breeding migrations. We quantified and compared declines in horn length and rescue potential under various combinations of migration rate, hunting rate in hunted areas and temporal overlap in timing of harvest and migrations, which affects the migrants' survival and chances to breed within exploited areas. Our simulations suggest that the effects of size-selective harvest on male horn length in hunted populations can be dampened or avoided if harvest pressure is low, migration rate is substantial, and migrants have a low risk of being shot. Intense size-selective harvest impacts the phenotypic and genetic diversity in horn length, and population structure through changes in proportions of large-horned males, sex ratio and age structure. When hunting pressure is high and overlaps with male migrations, effects of selective removal also emerge in the protected population, so that instead of a genetic rescue of hunted populations, our model predicts undesirable effects inside protected areas. Our results stress the importance of a metapopulational approach to management, to promote genetic rescue from protected areas and limit ecological and evolutionary impacts of harvest on both harvested and protected populations.

Experimental characterization of TERIPHIC 4-fold and 8-fold InP photodiode arrays - Detection of 50Gbaud signals with NRZ and PAM-4 modulation formats

The data sets refer to the results from the experimental characterization of the TERIPHIC 4-fold and 8-fold InP-photodiode arrays, which operate in the O-band. The experimental setup consisted of a commercially available off-the-shelf (COTS) laser source, a COTS Mach-Zehnder modulator, and the TERIPHIC PD arrays. For the purposes of the experiments, signals with NRZ and PAM-4 modulation formats and 50 Gbaud symbol rates were generated, transmitted, and detected by the TERIPHIC photodetectors. Two different subassemblies were evaluated. The first subassembly had four InP photodiodes and the second eight. The generated photocurrents were sampled by a real-time oscilloscope with a 256 Gbaud sample rate. The data sets are actually the samples extracted from the oscilloscope. The data sets have a filename in the format “Symbol rate#Modulation formats#PDn#Transmission length#version#Subassemblyn.bin”, where Symbol rate = 50 Gbaud PDn, for n=  1,2, ...,8 Transmission length = B2B (0 km), 2 km, and 10 km Subassembly for n=1 and 2   The data sets are parts of the Open data management plan of the TERIPHIC ICT project (GA No. 825502)

Experimental characterization of TERIPHIC quad InP EML array - Generation and transmission of 50Gbaud signals with NRZ and PAM-4 modulation formats

The data sets refer to the results from the experimental characterization conducted on the TERIPHIC quad InP-EML array, which operates in the O-band. Each EML incorporates a DFB laser, an Electroabsorption modulator, and a Semiconductor Optical Amplifier to provide additional power boost, all on the same die. Three out of the four EMLs were characterized successively and generated signals at symbol rates of 50 Gbaud and transmitted them over various fiber lengths. The modulated optical signals were detected by a single commercially avalaible photodetector with more than 70 GHz 3-dB bandwidth. The generated electrical signals were then sampled by a real-time oscilloscope with a 256 Gbaud sample rate. A low-pass filter with a 50 GHz 3-dB cut-off frequency was digitally applied to the oscilloscope to improve the signal-to-noise ratio. The data sets have a filename in the format “Symbol rate#Modulation formats#EMLn#Transmission length#version.bin”, where SYmbol rate = 50 Gbaud EMLn, for n=  2, 3, 4 Transmission length = B2B (0 km), 2 km, and 10 km Version: v1, v2 and v3. Same operating parameters but at different time index   The data sets are parts of the Open data management plan of the TERIPHIC ICT project (GA No. 825502)

opencc-zeroMay 2023View details →

Disentangling mechanical and sensory modules in the radiation of Noctilionoid bats

The vertebrate cranium is a complex anatomical structure with diverse mechanical and sensory functions. Shifts between modularity and integration in both sets of functions, especially mechanical function, have been implicated in adaptive diversification. However, how mechanical and sensory systems and functions have coevolved and how their interrelationship contributes to phenotypic disparity remains largely unexplored. To examine the modularity, integration, and evolutionary rates of sensory and mechanical structures within the head, we analyzed hard and soft tissue scans from ecologically diverse bats from the superfamily Noctilionoidea, which range from generalized insectivores to derived frugivores and nectarivores. We identified eight cranial regions as distinct modules — five associated with bite force and three linked to the olfactory, visual, and auditory systems, respectively — whose interrelationships differ between Neotropical leaf-nosed bats (Family Phyllostomidae) and other noctilionoids. Our analyses suggest that the peak rates of sensory module evolution predate those of mechanical modules. This finding is consistent with transitions to new diets first involving changes in the detection of novel food items, followed by adaptations to process them. We propose the coevolution of structures influencing bite force, olfaction, vision, and hearing constituted a structural opportunity that allowed the phyllostomid ancestor to take advantage of existing ecological opportunity and the group to become a classic example of adaptive radiation.

opencc-zeroApr 2023View details →

Data from: A brain-wide analysis maps structural evolution to distinct anatomical modules

Brain anatomy is highly variable and it is widely accepted that anatomical variation impacts brain function and ultimately behavior. The structural complexity of the brain, including differences in volume and shape, presents an enormous barrier to define how variability underlies differences in function. In this study, we sought to investigate the evolution of brain anatomy in relation to brain region volume and shape across the brain of a single species with variable genetic and anatomical morphs. We generated a high-resolution brain atlas for the blind Mexican cavefish and coupled the atlas with automated computational tools to directly assess variability in brain region shape and volume across all populations. We measured the volume and shape of every neuroanatomical region of the brain and assessed correlations between anatomical regions in surface fish, cavefish, and surface to cave F2 hybrids, whose phenotypes span the range of surface to cave. We find that dorsal regions of the brain are contracted in cavefish, while ventral regions have expanded. This trend is true for both volume and shape, suggesting that these two parameters share developmental mechanisms necessary for remodeling the entire brain. Given the high conservation of brain anatomy and function among vertebrate species, we expect these data to reveal generalized principles of brain evolution and show that Astyanax provides a system for functionally determining basic principles of brain evolution by utilizing the independent genetic diversity of different morphs, to test how genes influence early patterning events to drive brain-wide anatomical evolution.

Deliverable D6.2 "TOOL FOR PERFORMANCE ASSESSMENT"- BN network and Bellman shortest path analysis_Module 3_Annex 6

This file will introduce the BN network and Bellman shortest path analysis Module 3 Annex 6 in deliverable D6.2 "TOOL FOR PERFORMANCE ASSESSMENT".

Imaging data from "Live-cell 3D single-molecule tracking reveals modulation of enhancer dynamics by NuRD"

3D 20ms, 3D 500ms and 2D dCas9 raw videos, localisation, tracking and trajectory analysis data From 'Live-cell 3D single-molecule tracking reveals modulation of enhancer dynamics by NuRD" (2021). Biorxiv. https://doi.org/10.1101/2020.04.03.003178

Data platform (genotyping data set) related to ERDF postdoctoral project No. 1.1.1.2/VIAA/4/20/718 "The role of vitamin D gene polymorphisms and its receptors in the modulation of intestinal inflammation in patients with relapsing and progressive forms of multiple sclerosis".

Data platform (genotyping dataset) related to the ERDF postdoctoral project No. 1.1.1.2/VIAA/4/20/718 “The role of vitamin D and its receptor gene polymorphisms in the modulation of intestinal inflammation in patients with relapsing and progressive forms of multiple sclerosis”. About the project and gathered data: The dataset contains  genotyping data on 289 sex-balanced samples (approximately 60% women / 40% men)) were created at the the multiple sclerosis (MS) Clinic of the Latvian Maritime Medical Center (LMMC) in 2011 (disease duration of 1-51 years); the collection was updated within the framework of the ERDF MS project (2017-2020) and replenished during the ERDF postdoctoral project No. 1.1.1.2/VIAA/4/20/718 “The role of vitamin D and its receptor gene polymorphisms in the modulation of intestinal inflammation in patients with relapsing and progressive forms of multiple sclerosis” (2021-2023). For the Genotyping dataset relevant information for each patient from the MS disease cohort, referring to proteasomal gene genetic variations (microsatellites and SNPs): (HSMS006 (PSMA6), HSMS602 (FAM177A1), HSMS701 (KIAA0391), HSMS702 (KIAA0391) HSMS801 (KIAA0391), rs11543947(PSMB5), rs2277460 (mi110), rs1048990 (mi8) (PSMA6), rs1048990 (mi8) (PSMA6), rs2295826/rs2295827(PSMC6), rs2348071 (PSMA3), rs2071543, rs9357155 (PSMB8), rs17587(PSMB9), rs74421874 (PSMD9); rs9275596 from HLA region; vitamin D-related genes (VDR and GC) polymorphisms: rs2228570, rs1544410, rs7975232, rs731236 (VDR) and rs7041, rs4588 (GC).

Receptor cavity-based screening reveals potential allosteric modulators of gonadotropin receptors in carp (Cyprinus carpio)

The datasets include input files used for docking  including the receptor models, docking grids and and ligand databases consisting of prepared ligand used in screening of potential allosteric modulators for carp FSHR and LHR. the original dataset  were sourced from The compound libraries from <a href="https://enamine.net/compound-libraries">https://enamine.net/compound-libraries</a> and are free to access, downloaded and used as per the mentioned sites terms and conditions. The ligand Database given here are constructed and processed  using the Phase module (Phase, Schrödinger, LLC, New York, NY, 2021.). The dataset also includes .pdb files of the docked ligands.

Heterogeneous Receptor Expression Underlies Non-uniform Peptidergic Modulation of Olfaction in Drosophila

Original confocal scans for all light microscopy images in the main and supplementary figures of Sizemore et al., 2023.  If you make use of this data, please cite: Heterogeneous Receptor Expression Underlies Non-uniform Peptidergic Modulation of Olfaction in Drosophila Tyler R. Sizemore, Julius Jonaitis, Andrew M. Dacks doi: 10.1038/s41467-023-41012-3

opencc-zeroJul 2023View details →

Data from: Weak evidence of trade-offs modulated by seed mass among a guild of closely related winter annuals

This is R code for addressing the following research questions: (1) Do species differ in their average responses to density treatments? (2) Does seed mass explain species' responses to increasing densities of conspecifics? (3) Does seed mass explain species' responses to increasing densities of both conspecifics and heterospecifics?

Alkali metal cations modulate the geometry of different binding sites in HCN4 selectivity filter for permeation or block

Dataset underlying findings published in: "Alkali metal cations modulate the geometry of different binding sites in HCN4 selectivity filter for permeation or block"