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539 results for “disentangling”

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dryad32/100

Data from: Disentangling the role of phenotypic plasticity and genetic divergence in contemporary ecotype formation during a biological invasion

The occurrence of contemporary ecotype formation through adaptive divergence of populations within the range of an invasive species typically requires standing genetic variation but can be facilitated by phenotypic plasticity. The relative contributions of both of these to adaptive trait differentiation have rarely been simultaneously quantified in recently diverging vertebrate populations. Here we study a case of intraspecific divergence into distinct lake and stream ecotypes of threespine stickleback that evolved in the past 140 years within the invasive range in Switzerland. Using a controlled laboratory experiment with full-sib crosses and treatments mimicking a key feature of ecotypic niche divergence, we test if the phenotypic divergence that we observe in the wild results from phenotypic plasticity or divergent genetic predisposition. Our experimental groups show qualitatively similar phenotypic divergence as those observed among wild adults. The relative contribution of plasticity and divergent genetic predisposition differs among the traits studied, with traits related to the biomechanics of feeding showing a stronger genetic predisposition, whereas traits related to locomotion are mainly plastic. These results implicate that phenotypic plasticity and standing genetic variation interacted during contemporary ecotype formation in this case.

opencc-zeroDec 2013View details →
dryad32/100

Data from: Ants on Clerodendrum infortunatum: disentangling effects of larceny and herbivory

Nectar larcenists extract nectar from flowers without pollinating them. A reasonable expectation is that any form of nectar larceny should have a detrimental effect on the plant's reproductive success. However, studies reveal an entire range of effects, from highly negative to highly positive. This variation in effect may be partly explained by additional, unmeasured, effects of nectar larcenists on plants. In a study system where two ant species Tapinoma melanocephalum (Fabr.) and Trichomyrmex destructor (Jerd.) act as nectar larcenists, we examined the effect of larceny on the female reproductive success of Clerodendrum infortunatum Gaertn. in rain forest fragments of the Western Ghats, India. This was done through a combination of field observations and a series of field experiments looking at the effects of excluding ants from inflorescences. We found that T. destructor reduces fruit set considerably. Rather than this being a consequence of nectar larceny, however, our experiments show that the negative effect arises instead from the herbivorous behaviour of the ant. At a population level, both ant species prefer edges over interiors of forest patches, spatially concentrating the interaction zone to forest edges. Simultaneously considering multiple ecological interactions and disentangling their relative contributions might explain the large variation across species in the observed effect of larceny. The overall population effect of nectar larceny and herbivory is likely to depend on the spatial structuring of plants and ants.

opencc-zeroDec 2017View details →
dryad32/100

Data from: Disentangling the effects of environmental conditions on wintering and breeding grounds on age-specific survival rates in a trans-Saharan migratory raptor

Migratory species are subject to environmental variability occurring on breeding and wintering grounds. Estimating the relative contribution of environmental factors experienced sequentially during breeding and wintering, and their potential interaction, to the variation of survival is crucial to predict population viability of migratory species. Here we investigated this issue for the Montagu's harrier Circus pygargus, a trans-Saharan migrant. We analysed capture-recapture data from a 29-yr long monitoring of wing-tagged offspring and adults at two study sites in France (Rochefort-RO & Maine-et-Loire-ML). The study period covers a climatic shift occurring in the Sahel with increasing rainfall following a period of droughts (Sahel greening). We found that harriers' adult survival in RO (between 1988 and 2005) varied over time and was sensitive to the interaction between the amount of rainfall in the Sahel and the annual mean breeding success, two proxies of prey availability. The occurrence of adverse conditions on breeding and wintering grounds in the same year decreased survival from 0.70-0.77 to 0.48 ± 0.05. Juvenile survival in RO was slightly more sensitive to conditions in Europe than in the Sahel. Unexpectedly, lower survival rates were found in years with higher mean breeding success, suggesting compensatory density feedbacks may operate. By contrast, adult survival in ML, monitored between 1999 and 2017, was higher compared to RO (0.76 ± 0.03 vs. 0.66 ± 0.02), remained constant and unaffected by any proxy of prey availability. This difference seems consistent with the fact that harriers in ML experienced better and especially less variable environmental conditions during breeding and wintering seasons compared to RO. Overall, we showed that survival of a migratory bird is sensitive to the level of variability in environmental conditions and that adverse conditions on wintering grounds can amplify the negative effects of conditions during the previous breeding season on birds' survival.

opencc-zeroAug 2019View details →
dryad32/100

Disentangling direct and indirect effects of habitat fragmentation on wild plants' pollinator visits and seed production

<p>Habitat fragmentation threatens plant and pollinator communities, as well as their interactions. However, the effects of landscape fragmentation on the pollination of wild plant species are not well-understood yet, partly because in fragmented landscapes there are many correlated features (e.g. decreased patch size, increased isolation and patch complexity) whose influences are difficult to disentangle. Using a SEM approach, we assessed the direct and indirect effects of landscape fragmentation (patch size, isolation and complexity, percentage of surrounding forest) on the abundance, functional-group richness and evenness of pollinators of 24 habitat fragments within an agricultural landscape in Southern Norway. In addition, we studied how these variables affected visitation rates (visits/flower) and seed production (seed set, seed weight) in the four most abundant plant species in the area. Flower abundance was higher in larger and complex patches and decreased with the percentage of forest in the surroundings, while flower richness increased with patch complexity. We found a direct negative relationship between patch complexity and the overall number of pollinator visits that the habitat fragments received. Apart from this direct landscape effect, pollinator visits were mostly affected by the floral communities, with overall flower abundance and richness increasing both total number of pollinator visits and pollinator-group richness, and flower richness having an additional negative influence on pollinator-group evenness.  Interestingly, we did not find any direct link between visitation rates and reproductive success for any of the study plant species. Instead, several landscape variables directly affected species seed production, although the effects of landscape on seed production were highly species-specific. Patch complexity, had a negative effect on seed production in two of the four focal species, while other components of the landscape had species-specific effects. Increasing fragmentation of agricultural landscapes affects pollination interactions at the community level and the reproduction of wild plants. However, understanding the effects of fragmentation on seed production requires going beyond estimating visitation rates, since landscape effects on plant reproduction are not always related to overall interaction frequencies.</p>

opencc-zeroFeb 2020View details →
dryad32/100

Data from: Disentangling the effects of multiple environmental drivers on population changes within communities

1. The effects of different environmental drivers on the changes in species' population abundances can be difficult to disentangle since they often act simultaneously. Researchers have built statistical models that include environmental variables (such as annual temperature), or species attributes (such as a species' temperature preference), which are assumed to detect the impacts of specific drivers (such as climate change). However, these approaches are often applied separately or, if combined, not explicitly compared. 2. We show the complementary insights gained by applying both these approaches to a community dataset on Danish terrestrial birds. We use our analysis to compare the relative importance of climate change and agricultural land-use change for the abundance changes within the community between 1983 and 2013. 3. Population models were fitted to the community data of species' annual abundances with predictors comprising: species attributes (species' temperature and habitat preferences), environmental variables (climatic and agricultural land-use change variables), or both. Relationships between species' abundances and environmental variables were used to identify the drivers associated with average abundance changes of species in the community. Relationships between species' abundances and their attributes were used to understand the drivers causing interspecific variation in abundance changes.4. Warmer winters were positively associated with community-level abundances, and warm-adapted species had more positive abundance changes than cold-adapted ones. Agricultural land-use area was negatively associated with community-level abundances, and birds using a high proportion of meadow and habitat specialists had more negative abundance changes than birds using other habitats and habitat generalists. Effect sizes of environmental variables were larger for agricultural land-use change while those for species attributes were larger for climate change. 5. The environmental-data approach suggested that agricultural land-use change has decreased the average abundances of species in the community, affecting total community size while the species-attribute based approach suggested that climate change has caused variation in abundance among species, affecting community composition. Environmental variables and species attributes that are hypothesized to link to specific drivers can be used together to provide complementary information on the impacts of different drivers on communities.

opencc-zeroDec 2017View details →
dryad32/100

Data from: Disentangling biotic interactions, environmental filters, and dispersal limitation as drivers of species co-occurrence

A key focus in ecology is to search for community assembly rules. Here we compare two community modelling frameworks that integrate a combination of environmental and spatial data to identify positive and negative species associations from presence-absence matrices, and incorporate an additional comparison using joint species distribution models (JSDM). The frameworks use a dichotomous logic tree that distinguishes dispersal limitation, environmental requirements, and interspecific interactions as causes of segregated or aggregated species pairs. The first framework is based on a classical null model analysis complemented by tests of spatial arrangement and environmental characteristics of the sites occupied by the members of each species pair (Classic framework). The second framework, (SDM framework) implemented here for the first time, builds on the application of environmentally-constrained null models (or JSDMs) to partial out the influence of the environment, and includes an analysis of the geographical configuration of species ranges to account for dispersal effects. We applied these approaches to examine plot-level species co-occurrence in plant communities sampled along a wide elevation gradient in the Swiss Alps. According to the frameworks, the majority of species pairs were randomly associated, and most of the non-random positive and negative species associations could be attributed to environmental filtering and/or dispersal limitation. These patterns were partly detected also with JSDM. Biotic interactions were detected more frequently in the SDM framework, and by JSDM, than in the Classic framework. All approaches detected species aggregation more often than segregation, perhaps reflecting the important role of facilitation in stressful high-elevation environments. Differences between the frameworks may reflect the explicit incorporation of elevational segregation in the SDM framework and the sensitivity of JSDM to the environmental data. Nevertheless, all methods have the potential to reveal general patterns of species co-occurrence for different taxa, spatial scales, and environmental conditions.

opencc-zeroDec 2016View details →
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Data from: Sunrise in the city: disentangling drivers of the avian dawn chorus onset in urban greenspaces

Urban systems are known to have a number of effects on avian richness, density, and morphological and behavioral traits. However, no study to date has simultaneously examined the wide range of urban variables in relation to the avian dawn chorus, a complex behavioral phenomenon. Previous studies investigating adjustments of the dawn chorus onset in urban settings have mainly been confined to relationships with noise and light levels. In addition to noise and light levels, in this study we included other potentially related environmental characteristics describing vegetation structure, urban infrastructure, and human activity, all of which have been shown to be drivers of bird diversity in urban areas. We conducted dawn chorus surveys at 38 Los Angeles urban greenspaces and used a classification and regression tree analysis to identify specific urban scenarios that best explained timing differences in the dawn chorus onset. Our results show that light level was the most important variable related to the dawn chorus onset time, in which, counter-intuitively, bird communities in greenspaces with higher light levels had later onsets. In addition, noise was an important factor for the chorus onset in greenspaces with higher light levels. Although our results differ from those of previous studies, these findings highlight the importance of noise and light levels in explaining dawn chorus onset variation, indicating the need for further research in untangling this complex and ecologically important phenomenon.

opencc-zeroDec 2016View details →
dryad32/100

Data from: Population dynamics of a northern-adapted mammal: disentangling the influence of predation and climate change

Community structure and interspecific interactions are particularly vulnerable to rapidly changing climatic regimes. Recent changes in both climate and vertebrate community assemblages have created a unique opportunity to examine the impacts of two dynamic forces on population regulation. We examined the effects of warming winter conditions and the reestablishment of a previously extirpated predator, the fisher (Martes pennanti), on regulatory mechanisms in a northern-adapted mammal, the porcupine (Erethizon dorsatum), along their southern range boundary. Using a long-term (17-year) capture–recapture data set, we (1) quantified the impacts of climate change and increased fisher predation on the survival of adult porcupines at their regional southern terminus, (2) assessed recruitment (via both adult fecundity and juvenile survival) of porcupines, and (3) modeled the relative importance of predation and winter conditions on the demography and population growth rate (λ). Severe winters and abundant predators interacted synergistically to reduce adult survivorship by as much as 44%, while expanding predator populations led to near reproductive failure among porcupines. Increasing predatory pressure, disruptions in this community module, and more frequent extreme winter weather events led to predicted extirpation within 50 years, whereas in the absence of predators, the population was viable. Our results provide a mechanistic understanding behind distributional shifts resulting from climate change and may be broadly relevant for predicting future distributional shifts in other northern-adapted mammalian species.

opencc-zeroDec 2013View details →
dryad32/100

Data from: Stressor dominance and sensitivity-dependent antagonism: disentangling the freshwater effects of an insecticide among co-occuring agricultural stressors

1. Pesticide concentrations are correlated with regional declines in stream invertebrate diversity. Experimental studies have identified that pesticides can have strong and persistent negative effects on aquatic ecosystems. These effects may occur at concentrations orders of magnitude lower than laboratory toxicity studies predict. Synergism among stressors is one explanation for the observed laboratory-field difference. However, the true effect of pesticides on stream invertebrates remains uncertain, given interactions between stressors and natural environmental conditions. 2. We experimentally examined multiple-stressor effects on stream invertebrate assemblages and leaf-litter breakdown using 24 independent ~900 L re-circulating outdoor mesocosms in a semi-orthogonal design. Two pulses of the pesticide malathion (C10H19O6PS2) were delivered at low and high concentrations (Pulse 1: low at 0.1 and high at 1 µg L-1¬; Pulse 2: at 2.5 and 25 µg L-1). These were crossed with a treatment mimicking the combined stressors from agricultural development; nitrogen, phosphorus and clay (kaolin) sediment (hereafter agricultural stressors). 3. Malathion degradation was rapid (&lt;24 hr half-life) in all treatments, likely because of photolysis, hydrolysis, the presence of biofilms and sorptive processes. There were significant differences in invertebrate assemblages between treatments, where malathion contributed to 48% and 87% of deviance during Pulse 1 and 2 respectively. Malathion had strong negative effects during Pulse 2, decreasing Ephemeroptera, Plecoptera and Trichoptera abundance (P&lt;0.05), invertebrate richness (P&lt;0.01) and total abundance (P&lt;0.01). 4. Despite the dominant effects of malathion on invertebrates, agricultural stressors inhibited rates of leaf litter breakdown (P&lt;0.05), increased invertebrate densities and weakly mitigated malathion toxicity in mesocosms (e.g. PERMANOVA, P≈0.1). Malathion breakdown analysis indicated sediment addition reduced malathion concentrations through alkaline hydrolysis and sorption. Experimental assays on common taxa indicated sediment was antagonistic with malathion. 5. Pesticide effects were not synergistic with the stressors tested here. Indeed, sensitivity-dependent stressor antagonisms were observed, reinforcing a mechanistic understanding of stressor effects and interactions is important. Among aquatic stressors examined, malathion had dominant effects on invertebrate assemblages, despite rapid degradation. Our results suggest that pesticide effects may be underestimated within ecosystems, where pesticides can have severe community wide effects, but rapid pesticide breakdown and sorptive processes may conceal causal links.01-May-2019

opencc-zeroMay 2019View details →
dryad32/100

Data from: How random is social behaviour? Disentangling social complexity through the study of a wild house mouse population

Out of all the complex phenomena displayed in the behaviour of animal groups, many are thought to be emergent properties of rather simple decisions at the individual level. Some of these phenomena may also be explained by random processes only. Here we investigate to what extent the interaction dynamics of a population of wild house mice (Mus domesticus) in their natural environment can be explained by a simple stochastic model. We first introduce the notion of perceptual landscape, a novel tool used here to describe the utilisation of space by the mouse colony based on the sampling of individuals in discrete locations. We then implement the behavioural assumptions of the perceptual landscape in a multi-agent simulation to verify their accuracy in the reproduction of observed social patterns. We find that many high-level features -- with the exception of territoriality -- of our behavioural dataset can be accounted for at the population level through the use of this simplified representation. Our findings underline the potential importance of random factors in the apparent complexity of the mice's social structure. These results resonate in the general context of adaptive behaviour versus elementary environmental interactions.

opencc-zeroDec 2011View details →
dryad32/100

Data from: Disentangling synergistic disease dynamics: Implications for the viral biocontrol of rabbits

European rabbits (Oryctolagus cuniculus) have been exposed to rabbit haemorrhagic disease virus (RHDV) and myxoma virus (MYXV) in their native and invasive ranges for decades. Yet, the long‐term effects of these viruses on rabbit population dynamics remain poorly understood. In this context, we analysed 17 years of detailed capture–mark–recapture data (2000–2016) from Turretfield, South Australia, using a probabilistic state‐space hierarchical modelling framework to estimate rabbit survival and epidemiological dynamics. While RHDV infection and disease‐induced death were most prominent during annual epidemics in winter and spring, we found evidence for continuous infection of susceptible individuals with RHDV throughout the year. RHDV‐susceptible rabbits had, on average, 25% lower monthly survival rates compared to immune individuals, while the average monthly force of infection in winter and spring was ~38%. These combined to result in an average infection‐induced mortality rate of 69% in winter and spring. Individuals susceptible to MYXV and immune to RHDV had similar survival probabilities to those having survived infections from both viruses, whereas individuals susceptible to both RHDV and MYXV had higher survival probabilities than those susceptible to RHDV and immune to MYXV. This suggests that MYXV may reduce the future survival rates of individuals that endure initial MYXV infection. There was no evidence for long‐term changes in disease‐induced mortality and infection rates for either RHDV or MYXV. We conclude that continuous, year‐round virus perpetuation (and perhaps heterogeneity in modes of transmission and infectious doses during and after epidemics) acts to reduce the efficiency of RHDV and MYXV as biocontrol agents of rabbits in their invasive range. However, if virulence can be maintained as relatively constant through time, RHDV and MYXV will likely continue realizing strong benefits as biocontrol agents.

opencc-zeroDec 2017View details →
dryad32/100

Data from: Integrating 2D and 3D shell morphology to disentangle the palaeobiology of ammonoids: a virtual approach

Based on data derived from computed tomography, we demonstrate that integrating 2D and 3D morphological data from ammonoid shells represents an important new approach for investigating the palaeobiology of ammonoids. Characterization of ammonite morphology has long been constrained to 2D data, with only a few studies collecting ontogenetic data in 180° steps. Here we combine this traditional approach with 3D data collected from high-resolution nano-computed tomography. Ontogenetic morphological data on the hollow shell of a juvenile ammonite Kosmoceras (Jurassic, Callovian) was collected. 2D data was collected in 10° steps and show significant changes in shell morphology. Preserved hollow spines show multiple mineralized membranes never reported before, representing temporal changes in the ammonoid mantle tissue. 3D data show that chamber volumes do not always increase exponentially, as was generally assumed, but may represent a proxy for life events, such as stress phases. Furthermore, chamber volume cannot be simply derived from septal spacing in forms comparable to Kosmoceras. Vogel numbers represent a 3D parameter for chamber shape, and those for Kosmoceras are similar to other ammonoids (Arnsbergites, Amauroceras) and modern cephalopods (Nautilus, Spirula). Two methods to virtually document the suture line ontogeny, used to document phylogenetic relationships of larger taxonomic entities, were applied for the first time and present a promising alternative to hand drawings. The curvature of the chamber surfaces increases during ontogeny due to increasing strength of ornamentation and septal complexity. As this may allow for faster handling of cameral liquid, it could compensate for decreasing SA/V ratios through ontogeny.

opencc-zeroDec 2016View details →
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Data from: Fine-scale landscape genetics of the American badger (Taxidea taxus): disentangling landscape effects and sampling artifacts in a poorly understood species

Landscape genetics is a powerful tool for conservation because it identifies landscape features that are important for maintaining genetic connectivity between populations within heterogeneous landscapes. However, using landscape genetics in poorly understood species presents a number of challenges, namely, limited life history information for the focal population and spatially biased sampling. Both obstacles can reduce power in statistics, particularly in individual-based studies. In this study, we genotyped 233 American badgers in Wisconsin at 12 microsatellite loci to identify alternative statistical approaches that can be applied to poorly understood species in an individual-based framework. Badgers are protected in Wisconsin owing to an overall lack in life history information, so our study utilized partial redundancy analysis (RDA) and spatially lagged regressions to quantify how three landscape factors (Wisconsin River, Ecoregions and land cover) impacted gene flow. We also performed simulations to quantify errors created by spatially biased sampling. Statistical analyses first found that geographic distance was an important influence on gene flow, mainly driven by fine-scale positive spatial autocorrelations. After controlling for geographic distance, both RDA and regressions found that Wisconsin River and Agriculture were correlated with genetic differentiation. However, only Agriculture had an acceptable type I error rate (3–5%) to be considered biologically relevant. Collectively, this study highlights the benefits of combining robust statistics and error assessment via simulations and provides a method for hypothesis testing in individual-based landscape genetics.

opencc-zeroDec 2014View details →
dryad32/100

Data from: Disentangling the drivers of invasion spread in a vector-borne tree disease

1. Pine wilt disease (PWD) invaded southern Japan in the early 1900's and has gradually expanded its range to northern Honshu (Japanese mainland). The disease is caused by a pathogenic North American nematode, which is transmitted by native pine sawyer beetles. Recently the disease has invaded other portions of East Asia and Europe where extensive mortality of host pines is anticipated to resemble historical patterns seen in Japan. 2. There is a critical need to identify the main drivers of PWD invasion spread so as to predict future spread and evaluate containment strategies in newly invaded world regions. But the coupling of pathogen and vector population dynamics introduces considerable complexity that is important for understanding this and other plant disease invasions. 3. In this study, we analysed historical (1980-2011) records of PWD infection and vector abundance, which were spatially extensive but recorded at coarse categorical levels (none, low and high) across 403 municipalities in northern Honshu. We employed a multistate occupancy model that accounted both for demographic stochasticity and observation errors in categorical data. 4. Analysis revealed that sparse sawyer populations had lower probabilities of transition to high abundance than did more abundant populations even when regional abundance stayed the same, suggesting the existence of positive density dependence, i.e. an Allee effect, in sawyer dynamics. Climatic conditions (average accumulated degree days) substantially limited invasion spread in northern regions, but this climatic influence on sawyer dynamics was generally weaker than the Allee effect. 5. Our results suggest that tactics (e.g., sanitation logging of infected pines) which strengthen Allee effects in sawyer dynamics may be effective strategies for slowing the spread of PWD.

opencc-zeroDec 2017View details →
dryad32/100

Disentangling lousy relationships: Comparative phylogenomics of two sucking louse lineages parasitizing chipmunks

<p><span><span><span><span><span><span><span><span><span><span><span>The evolution of obligate parasites is often interpreted in light of their hosts' evolutionary history. An expanded approach is to examine the histories of multiple lineages of parasites that inhabit similar environments on a particular host lineage. Western North American chipmunks (genus <i>Tamias</i>) have a broad distribution, a history of divergence with gene flow, and host two species of sucking lice (Anoplura), <i>Hoplopleura arboricola</i> and <i>Neohaematopinus pacificus</i>. From total genomic sequencing, we obtained sequences of over 1100 loci sampled across the genomes of these lice to compare their evolutionary histories and examine the roles of host association in structuring louse relationships. Within each louse species, clades are largely associated with closely related chipmunk host species. Exceptions to this pattern appear to have a biogeographic component, but differ between the two louse species. Phylogenetic relationships among these major louse clades, in both species, are not congruent with chipmunk relationships. In the context of host associations, each louse lineage has a different evolutionary history, supporting the hypothesis that host-parasite assemblages vary both across the landscape and with the taxa under investigation. In addition,<i> </i>the louse <i>Hoplopleura erratica </i>(parasitizing the eastern <i>Tamias striatus</i>) is embedded within <i>H. arboricola</i>, rendering it paraphyletic. This phylogenetic result, together with comparable divergences within <i>H. arboricola</i>, indicate a need for taxonomic revision. Both host divergence and biogeographic components shape parasite diversification as demonstrated by the distinctive diversification patterns of these two independently evolving lineages that parasitize the same hosts.</span></span></span></span></span></span></span></span></span></span></span></p>

opencc-zeroJun 2021View details →
dryad32/100

Stresses affect inbreeding depression in complex ways: Disentangling stress-specific genetic effects from effects of initial size in plants

<p>The magnitude of inbreeding depression (ID) varies unpredictably among environments. ID often increases in stressful environments suggesting that these expose more deleterious alleles to selection or increase their effects. More simply, ID could increase under conditions that amplify phenotypic variation (CV²), e.g. by accentuating size hierarchies among plants. These mechanisms are difficult to distinguish when stress increases both ID and phenotypic variation. We grew in- and outbred progeny of <i>Mimulus guttatus</i> under six abiotic stress treatments (control, waterlogging, drought, nutrient deficiency, copper addition and clipping) with and without competition by the grass <i>Poa palustris</i>. ID differed greatly among stress treatments with δ varying from 7% (control) to 61% (waterlogging) but did not consistently increase with stress intensity. <i>Poa</i> competition increased ID under nutrient deficiency but not other stresses. Analyzing effects of initial size on performance of outbred plants suggests that under some conditions (low N, clipping) competition increased ID by amplifying initial size differences. In other cases (e.g., high ID under waterlogging), particular environments amplified the deleterious genetic effects of inbreeding suggesting differential gene expression. Interestingly, conditions that increased the phenotypic variability of inbred progeny regularly increased ID whereas variability among outbred progeny showed no relationship to ID. Our study reconciles the stress- and phenotypic variability hypotheses by demonstrating how specific conditions (rather than stress <i>per se</i>) act to increase ID. Analyzing CV² separately in inbred and outbred progeny while including effects of initial plant size improve our ability to predict how ID and gene expression vary across environments.</p>

opencc-zeroJun 2021View details →
zenodo32/100

Dataset from the Am J Bot 2016 103(9) paper: "Disentangling plasticity of serotiny, a key adaptive trait in a Mediterranean conifer"

<p>Raw data from the American Journal of Botany paper: "Disentangling plasticity of serotiny, a key adaptive trait in a Mediterranean conifer" Am J Bot. 2016 Sep;103(9):1582-91. doi: 10.3732/ajb.1600199</p>

opencc-by-nc-nd-4.0Aug 2016View details →
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FIGURE 83 in Disentangling a taxonomic nightmare: a revision of the Australian, Indomalayan and Pacific species of Altica Geoffroy, 1762 (Coleoptera: Chrysomelidae: Galerucinae)

FIGURE 83. Altica gravida (Blackburn): larval defoliation of Myriophyllum papillosum, Barmah National Park, Victoria (photo: K Ward)

opennotspecifiedDec 2015View details →
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FIGURE 79 in Disentangling a taxonomic nightmare: a revision of the Australian, Indomalayan and Pacific species of Altica Geoffroy, 1762 (Coleoptera: Chrysomelidae: Galerucinae)

FIGURE 79. Distribution of Altica caerulea (Olivier), open circles = probably correct literature records. FIGURE 80. Distribution of Altica corrusca (Erichson).

opennotspecifiedDec 2015View details →
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FIGURE 78 in Disentangling a taxonomic nightmare: a revision of the Australian, Indomalayan and Pacific species of Altica Geoffroy, 1762 (Coleoptera: Chrysomelidae: Galerucinae)

FIGURE 78. Distribution of Altica birmanensis (Jacoby), open circles = probably correct literature records.

opennotspecifiedDec 2015View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

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