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279 results for “historical biogeography”
Figure 2 from: Piwowarczyk R, Schneider AC, Góralski G, Kwolek D, Denysenko-Bennett M, Burda A, Ruraż K, Joachimiak AJ, Pedraja ÓS (2021) Phylogeny and historical biogeography analysis support Caucasian and Mediterranean centres of origin of key holoparasitic Orobancheae (Orobanchaceae) lineages. PhytoKeys 174: 165-194. https://doi.org/10.3897/phytokeys.174.62524
Figure 2 Rooted Maximum Likelihood phylogenetic tree constructed using plastid trnL–trnF spacer sequences. As an outgroup, Lindenbergia sinaica was used. Numbers near branches show ultrafast bootstrap values (values ≥ 75 are shown). The bar represents the amount of genetic change (nucleotide substitutions per site) A summary of backbone (generic) relationships BPhelipanche clade COrobanche clade. Species names, the country of origin, host species (if available) and GenBank number are included on the phylogeny tip labels.
Figure 3 from: Piwowarczyk R, Schneider AC, Góralski G, Kwolek D, Denysenko-Bennett M, Burda A, Ruraż K, Joachimiak AJ, Pedraja ÓS (2021) Phylogeny and historical biogeography analysis support Caucasian and Mediterranean centres of origin of key holoparasitic Orobancheae (Orobanchaceae) lineages. PhytoKeys 174: 165-194. https://doi.org/10.3897/phytokeys.174.62524
Figure 3 Historical biogeography of tribe Orobancheae, reconstructed using a dispersal-extinction-cladognesis model implemented in RevBayes (maximum likelihood topology, maximum clade credibility branch lengths). Coloured circles at tips represent the current biogeographical range of each sampled taxon. Circles on each node represent the reconstructed ancestral area of the most recent common ancestor of the two daughter lineages, while circles on either side of the node show the reconstructed areas immediately following cladogenesis. Circle size is proportional to posterior probability. Each colour represents a different biogeographical region or combination of regions as indicated by the map and legend to the left of the chronogram. Tip labels for Cistanche follow nomenclature of Ataei et al. (2020). Asterisks indicate names proposed by Ataei (2017) but not yet validly published.
Fig. 1 Panel a in Historical biogeography highlights the role of Miocene landscape changes on the diversification of a clade of Amazonian tree frogs
Fig. 1 Panel a, time-calibrated phylogeny of Osteocephalus, Tepuihyla and Dryaderces in Amazonia, resulting from a mitogenomic analysis in BEAST and displaying the mean and 95% CI (blue bars) of divergences. Nodes are numbered in red (age details are in Electronic Supplement 1), and support values are depicted for Bayesian (following node symbol colours) and maximum likelihood analyses (following numbers below the nodes). Topological discrepancies between analyses for four low-supported nodes (21, 25, 34 and 43)
Fig. 5 in Ancient diversity within Diporodrilus (Crassiclitellata, Annelida) clarify the historical biogeography of Corso-Sardinian earthworms
Fig. 5 Detail of the phylogenetic tree obtained by maximum likelihood phylogenetic analysis of the concatenated sequence of molecular markers COI–16S–ND1–28S (see full tree in Suppl. Fig. 1). Bootstrap values are shown besides the corresponding nodes. External and internal morphological differences between the species of Diporodrilus are displayed besides the corresponding branches. Dashed circles represent position of spermathecae only found in some individuals. Structures shown in light and dark shades (clitellum and tubercula
Fig. 2 in Ancient diversity within Diporodrilus (Crassiclitellata, Annelida) clarify the historical biogeography of Corso-Sardinian earthworms
Fig. 2 Sampling localities of Diporodrilus included in this work. Codes correspond to Table 1. Black diamond: Dipodrilus omodeoi morphospecies; White circle: Diporodrilus pilosus morphospecies. Note that in ZONZ both morphospecies were found
FIGURE 4 in Biogeography of Glandulocaudinae (Teleostei: Characiformes: Characidae) revisited: phylogenetic patterns, historical geology and genetic connectivity
FIGURE 4. Area cladogram based on the current phylogeny of the Glandulocaudinae.
FIGURE 2 in Biogeography of Glandulocaudinae (Teleostei: Characiformes: Characidae) revisited: phylogenetic patterns, historical geology and genetic connectivity
FIGURE 2. Cladogram showing the phylogenetic relationship of the Glandulocaudinae.
FIG. 31 in Reassessment Of A Historical Collection Of Sauropod Dinosaurs From The Northern Morrison Formation Of Wyoming, With Implications For Sauropod Biogeography
FIG. 31. Right tibia of Neosauropoda indet. CM 36023 in A, proximal, B, posterior, C, medial, D, anterior, E, lateral, and F, distal views. Note the second cnemial crest (arrow in A). The specimen was initially cataloged as CM 1256 and later recataloged as CM 36023. Scale bar applies to all views. Abbreviations: cc, cnemial crest. Photos by Andrew McAfee.
FIG. 9 in Reassessment Of A Historical Collection Of Sauropod Dinosaurs From The Northern Morrison Formation Of Wyoming, With Implications For Sauropod Biogeography
FIG. 9. Right humeri of Diplodocidae indet. CM 28849 in A, anterior and B, medial views. CM 36026 in C, anterior and D, medial views. Note the rugose ridges parallel to the deltopectoral crests (arrows). Both specimens were initially included in CM 1256 and later recataloged. The numbers 72 (A) and 221 (C) are field numbers. Scale bar applies to both specimens. Abbreviations: dpc, deltopectoral crest; lr, lateral ridge; mr, medial ridge; tub, tubercle. Photos by E.T. (A, C) and Andrew McAfee (B, D).
Figure 8 in Comparative morphology, phylogenetic relationships, and historical biogeography of plesiolebiasine seasonal killifishes (Teleostei: Cyprinodontiformes: Rivulidae)
Figure 8. General area cladogram for plesiolebiasine areas of endemism.
Data from: Using historical biogeography models to study color pattern evolution
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Data from: Historical biogeography of the fern genus Deparia (Athyriaceae) and its relation with polyploidy
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Supplementary material for: Phylogenomics and historical biogeography of seahorses, dragonets, goatfishes, and allies (Teleostei: Syngnatharia): Assessing factors driving uncertainty in biogeographic inferences
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Data from: Multi-locus phylogeny of lethal amanitas: implications for species diversity and historical biogeography
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Historical biogeography of New World Passalidae
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Data from: Historical biogeography of endemic seed plant genera in the Caribbean: did GAARlandia play a role?
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A combined approach of mitochondrial DNA and anchored nuclear phylogenomics sheds light on unrecognized diversity, phylogeny, and historical biogeography of the cascade frogs, genus Amolops (Anura: Ranidae)
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Fig. 2. Phylogenetic hypothesis generated for 160 in Historical biogeography of fishes from coastal basins of Maranhão State, northeastern Brazil
Fig. 2. Phylogenetic hypothesis generated for 160 species in Maranhão basins.
Fig. 1 in Historical biogeography of fishes from coastal basins of Maranhão State, northeastern Brazil
Fig. 1. Hydrographic basins of Maranhão State.
Data from: Do the historical biogeography and evolutionary history of the digenean Margotrema spp. across central Mexico mirror those of their freshwater fish hosts (Goodeinae)?
Host-parasite systems provide an ideal platform to study evolution at different levels, including codivergence in a historical biogeography context. In this study we aim to describe biogeographic and codivergent patterns and associated processes of the Goodeinae freshwater fish and their digenean parasite (Margotrema spp.) over the last 6.5 Ma (million years), identifying the main factors (host and/or hydrogeomorphology) that influenced the evolution of Margotrema. We obtained a species tree for Margotrema spp. using DNA sequence data from mitochondrial and nuclear molecular markers (COI and ITS1, respectively) and performed molecular dating to discern divergence events within the genus. The dispersal-extinction-cladogenesis (DEC) model was used to describe the historical biogeography of digeneans and applied to cophylogenetic analyses of Margotrema and their goodeine hosts. Our results showed that the evolutionary history of Margotrema has been shaped in close association with its geographic context, especially with the geological history of central Mexico during the Pleistocene. Host-specificity has been established at three levels of historical association: a) Species-Species, represented by Xenotaenia resolanae-M. resolanae exclusively found in the Cuzalapa River Basin; b) Species-Lineage, represented by Characodon audax-M. bravoae Lineage II, exclusive to the Upper and Middle Mezquital River Basin, and c) Tribe-Lineage, including two instances of historical associations among parasites and hosts at the taxonomical level of tribe, one represented by Ilyodontini-M. bravoae Lineage I (distributed across the Ayuquila and Balsas River Basins), and another comprised of Girardinichthyini/Chapalichthyini-M. bravoae Lineage III, found only in the Lerma River Basin. We show that the evolutionary history of the parasites is, on several occasions, in agreement with the phylogenetic and biogeographic history of their hosts. A series of biogeographic and host-parasite events explain the codivergence patterns observed, in which cospeciation and colonisation via host-switching and vicariant plus dispersal events are appreciated, at different times during the diversification history of both associates, particularly during the Pleistocene.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.