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ShareScore release 0.9.0
Dataset results
307 results for “nuclear DNA”
Extrachromosomal DNA Associates with Nuclear Condensates and Reorganizes Chromatin Structures to Enhance Oncogenic Transcription [WGS]
GEO Series GSE275050. Homo sapiens. 3 samples. Type: Other.
Transfer of mitochondrial DNA into the nuclear genome during induced DNA breaks
GEO Series GSE226884. Homo sapiens; Mus musculus. 120 samples. Type: Other.
Data from: A nuclear DNA barcode for eastern North American oaks and application to a study of hybridization in an Arboretum setting
DNA barcoding has proved difficult in a number of woody plant genera, including the ecologically important oak genus Quercus. In this study, we utilized restriction-site associated DNA sequencing (RAD-seq) to develop an economical single-nucleotide polymorphism (SNP) DNA barcoding system that suffices to distinguish eight common, sympatric eastern North American white oak species. Two de novo clustering pipelines, PyRAD and Stacks, were used in combination with post-clustering bioinformatic tools to generate a list of 291 potential SNPs, 80 of which were included in a barcoding toolkit that is easily implemented using MassARRAY mass spectrometry technology. As a proof-of-concept, we used the genotyping toolkit to infer potential hybridization between North American white oaks transplanted outside of their native range (Q. michauxii, Q. montana, Q muehlenbergii/ Q. prinoides and Q. stellata) among natural forests of locally native trees (Q. alba and Q. macrocarpa) in the living collection at The Morton Arboretum (Lisle, IL, USA). Phylogenetic and clustering analyses suggested low rates of hybridization between cultivated and native species, with the exception of one Q. michauxii mother tree, the acorns of which exhibited high admixture from either Q. alba or Q. stellata and Q. macrocarpa; and a hybrid between Q. stellata that appears to have backcrossed almost exclusively to Q. alba. Together, RAD-seq and MassARRAY technologies allow for efficient development and implementation of a multispecies barcode for one of the more challenging forest tree genera.
Data from: Phylogenetic Systematics and Evolution of Primate-Derived Pneumocystis Based on Mitochondrial or Nuclear DNA Sequence Comparison
[No abstract entered]
Figure 1 from: Muhammad F, Lü Z-m, Liu L, Gong L, Du X, Shafi M, Kaleri HA (2018) Genetic structure of Octopus minor around Chinese waters as indicated by nuclear DNA variations (Mollusca, Cephalopoda). ZooKeys 775: 1-14. https://doi.org/10.3897/zookeys.775.24258
Figure 1 Map showing the collection locations.
Study to Evaluate Efficacy and Safety of Elamipretide in Subjects With Primary Mitochondrial Disease From Nuclear DNA Mutations (nPMD)
ClinicalTrials.gov study NCT05162768. IPD Sharing: NO. Countries: 10. Publications: 0.
Extrachromosomal DNA Associates with Nuclear Condensates and Reorganizes Chromatin Structures to Enhance Oncogenic Transcription [RNA-seq II]
GEO Series GSE275705. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing.
Mitochondrial Polymerase Gamma Dysfunction and Aging Cause Cardiac Nuclear DNA Methylation Changes [100929_MM9_Deluxe_Prom_Meth_HX1]
GEO Series GSE72889. Mus musculus. 16 samples. Type: Methylation profiling by genome tiling array.
Mismatch between mtDNA and nuclear DNA determines metabolism and healthy aging
GEO Series GSE56933. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
DNA Damage-Induced Nuclear STING Translocation Orchestrates Innate Immune Activation and Chromatin Remodeling [RNA-Seq]
GEO Series GSE296538. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Data from: Phylogenetic Systematics and Evolution of Primate-Derived Pneumocystis Based on Mitochondrial or Nuclear DNA Sequence Comparison
Open the record for dataset details and reuse information.
Data from: A nuclear DNA barcode for eastern North American oaks and application to a study of hybridization in an Arboretum setting
Open the record for dataset details and reuse information.
Optic atrophy 1 controls human neuronal development by preventing aberrant nuclear DNA methylation
GEO Series GSE117976. Homo sapiens. 25 samples. Type: Expression profiling by high throughput sequencing.
DNA methylation insulates exons from CTCF loops with nuclear speckles (RNA-Seq)
GEO Series GSE217759. Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing.
Nuclear phosphatidylinositol-5-phosphate regulates ING2 stability at discrete chromatin targets in response to DNA damage [expression]
GEO Series GSE47645. Homo sapiens. 12 samples. Type: Expression profiling by array.
A Critical Role of Nuclear m6A Reader YTHDC1 in Leukemogenesis by Regulating MCM Complex-Mediated DNA Replication
GEO Series GSE178859. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Nuclear Accumulation of YTHDF1 Regulates mRNA Splicing in the DNA Damage Response
GEO Series GSE247891. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Nuclear phosphatidylinositol-5-phosphate regulates ING2 stability at discrete chromatin targets in response to DNA damage [ChIP-chip]
GEO Series GSE47688. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by genome tiling array.
DNA methylation insulates exons from CTCF loops with nuclear speckles (CUT&TAG)
GEO Series GSE217753. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Replicative senescence is associated with nuclear reorganization and DNA methylation at specific transcription factor binding sites (RNA-seq)
GEO Series GSE59966. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.