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261
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ShareScore release 0.9.0
Dataset results
261 results for “protein prediction”
Cross-modality and self-supervised protein embedding for compound–protein affinity and contact prediction
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Genomic language model predicts protein co-regulation and function
<p>Model for "Genomic language model predicts protein co-regulation and function" </p>
Predictive Value of Maternal Serum Pentraxin 3 (PTX 3) and Heparin-binding Protein (HBP) for Chorioamnionitis in Preterm Premature Rupture of Membranes
ClinicalTrials.gov study NCT05207800. IPD Sharing: Not stated. Countries: 0. Publications: 0.
Diagnostic Values of C-reactive Protein and Procalcitonin in Predicting Bacterial Infection in Acute Exacerbations of Chronic Obstructive Pulmonary Disease
ClinicalTrials.gov study NCT03923803. IPD Sharing: Not stated. Countries: 0. Publications: 0.
The Predictive Role of C-reactive Protein to Albumin Ratio (CAR) in the Treatment of Septic Arthritis in Young Chlidren
ClinicalTrials.gov study NCT06241365. IPD Sharing: YES. Countries: 0. Publications: 0.
Protein sets define disease states and predict in vivo effects of drug treatment
GEO Series GSE38856. Mus musculus. 46 samples. Type: Expression profiling by array.
Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept
GEO Series GSE136435. Homo sapiens. 1020 samples. Type: Other.
Locally Advanced Rectal Cancer - Radiation Response Prediction Study - Serum Proteins
GEO Series GSE65622. Homo sapiens. 288 samples. Type: Protein profiling by protein array.
Transcriptomic profiling of human cardiac cells predicts protein kinase inhibitor-associated cardiotoxicity
GEO Series GSE146097. Homo sapiens. 572 samples. Type: Expression profiling by high throughput sequencing.
Quantitative predictions of protein interactions with long non-coding RNAs
GEO Series GSE87233. Mus musculus. 3 samples. Type: Other.
Excavation of biomarker candidates for the diagnosis of Talaromyces marneffei infection via genome-wide prediction and functional annotation of secreted proteins
GEO Series GSE266975. Talaromyces marneffei. 3 samples. Type: Expression profiling by high throughput sequencing.
The FlbA-regulated predicted transcription factor rpnR of Aspergillus niger is involved in protein secretion and stress resistance
GEO Series GSE102899. Aspergillus niger. 6 samples. Type: Expression profiling by high throughput sequencing.
Gene and protein sequence features augment HLA class I ligand predictions (ribosome profiling)
GEO Series GSE210998. Homo sapiens. 6 samples. Type: Other.
Gene and protein sequence features augment HLA class I ligand predictions (mRNA sequencing)
GEO Series GSE210999. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Data from: The FlbA-regulated predicted transcription factor rpnR of Aspergillus niger is involved in stress resistance and protein secretion, in Regulators Controlled by the Sporulation Gene flbA of Aspergillus niger (Ph.D. thesis)
Proteins are secreted throughout the mycelium of Aspergillus niger except for the sporulating zone. A link between sporulation and repression of protein secretion was underlined by the finding that inactivation of the sporulation gene flbA results in colonies that secrete proteins throughout the colony. This finding is of interest to improve fungi as a cell factory. However, ΔflbA hyphae also lyse and have thinner cell walls. This pleiotropic phenotype is associated with differential expression of 36 transcription factor genes, of which rpnR was inactivated in this study. Sporulation, biomass, and secretome complexity were not affected in strain ΔrpnR. In contrast, ΔrpnR showed decreased resistance to H2O2 and the proteotoxic stress-inducing agent dithiothreitol. This was associated with reduced ribosomal subunit expression and reduced levels of proteins secreted into the medium. Taken together, RpnR of A. niger is involved in protein synthesis and proteotoxic stress resistance and is thus an interesting target for improving enzyme production capacity.
Analysis of microRNA expression profiles and prediction of target gene signaling pathways in familial hypertrophic cardiomyopathy with myosin-binding protein C3 (MYBPC3) gene mutations
GEO Series GSE150078. Homo sapiens. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Data from: The FlbA-regulated predicted transcription factor rpnR of Aspergillus niger is involved in stress resistance and protein secretion, in Regulators Controlled by the Sporulation Gene flbA of Aspergillus niger (Ph.D. thesis)
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RBP Footprint Grand Challenge: An evaluation of novel computational approaches to RNA-binding protein target prediction from structural data
GEO Series GSE227455. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Gene and protein sequence features augment HLA class I ligand predictions.
GEO Series GSE211000. Homo sapiens. 12 samples. Type: Other; Expression profiling by high throughput sequencing.
A sandbox for prediction and integration of DNA, RNA, and proteins in single cells
GEO Series GSE194122. Homo sapiens. 38 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.