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2,063
datasets available to search
ShareScore release 0.9.0
Dataset results
2,063 results for “single cell transcriptomics”
Single-cell transcriptomic analysis of Smad3-deficent mice
GEO Series GSE189025. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Single-cell transcriptome analysis of uniparental embryos reveals parent-of-origin effects on human preimplantation development
GEO Series GSE133856. Homo sapiens. 327 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Massively multiplex chemical transcriptomics at single cell resolution
GEO Series GSE139944. Homo sapiens; Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Temporal Analyses of Postnatal Liver Development and Maturation by Single Cell Transcriptomics
GEO Series GSE171993. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissue
GEO Series GSE52525. Mus musculus. 28 samples. Type: Expression profiling by high throughput sequencing.
An atlas of pancreatic function for ruminating goats mapped by single cell transcriptomics
GEO Series GSE207644. Capra hircus. 4 samples. Type: Expression profiling by MPSS.
T cell-mediated SIV dissemination into the CNS: a single-cell transcriptomic analysis
GEO Series GSE293543. Macaca mulatta; Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic comparison of young and aged choroid at the bulk and single-cell levels (single cells)
GEO Series GSE149100. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Single-cell Transcriptome Profiling of SW480 tumors from zebrafish xenografts
GEO Series GSE163750. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [Xenium]
GEO Series GSE300007. Homo sapiens. 6 samples. Type: Other.
Simultaneous quantifications of protein-DNA contacts and transcriptomics in single cells (KBM7 data)
GEO Series GSE123585. Homo sapiens. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
A comprehensive transcriptome portrait of colorectal cancer derived organoid at single cell levels (Bulk RNA-seq)
GEO Series GSE121454. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Single-Cell transcriptomes and immune profiling of IgG+ murine memory B cells from Bone Marrow and Spleen.
GEO Series GSE139836. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Single-cell transcriptomics reveals the natural product cannabinoid rewires tumor microenvironment via inhibiting alternative activation of macrophage and synergizes with PD-1 blockade
GEO Series GSE220635. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single cell transcriptomics reveals critical molecular programming of progenitors for motor neurons and oligodendrocytes in zebrafish
GEO Series GSE186163. Danio rerio. 2 samples. Type: Expression profiling by high throughput sequencing.
Single cell transcriptomic analysis (InDrops) of mouse mesenchymal stromal cells (mSCs or FAPs, fibro-adipogenic progenitors) isolated from lymph node, muscle and visceral adipose tissue
GEO Series GSE127005. Mus musculus. 5287 samples. Type: Expression profiling by high throughput sequencing.
Cross-species single-cell transcriptomic analysis reveals divergence of cell composition and functions in mammalian ileum epithelium
GEO Series GSE196663. Rattus norvegicus; Sus scrofa; Mus musculus; Macaca mulatta. 4 samples. Type: Expression profiling by high throughput sequencing.
Single-nucleus transcriptomics and chromatin accessibility of cell type-specific contributions to the epileptogenic cortex of focal cortical dysplasia type IIIa
GEO Series GSE266308. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single-cell transcriptome profiling for metastatic renal cell carcinoma patient-derived cells [RNA-seq]
GEO Series GSE73121. Homo sapiens. 121 samples. Type: Expression profiling by high throughput sequencing.
A transcriptome atlas of the mouse iris at single cell resolution defines cell types and the genomic response to pupil dilation
GEO Series GSE183690. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.