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Рис. 1. Prochromadorella coralis sp. nov., гоΛотип самца (а, b, e, f) и паратип самки (c, d): a — гоΛова; b — переΑний конец теΛа; с — теΛо в обΛасти вуΛьвы; d — хвост самки; е —суппΛементы; f — хвост самца. Масштаб: а — 10 мкм; e — 15 мкм; b, c, d, f — 30 мкм Fig. 1. Prochromadorella coralis sp. nov., male holotype (а, b, e, f) and female paratype (c, d): a — head; b — anterior body end; с — vulva region; d — female tail; е — supplements; f — male tail. Scale bars: а — 10 µm; e — 15 µm; b, c, d, f — 30 µm in Two new species of the free-living nematodes (Nematoda, Chromadorea) from coral reefs of Vietnam
Рис. 1. Prochromadorella coralis sp. nov., гоΛотип самца (а, b, e, f) и паратип самки (c, d): a — гоΛова; b — переΑний конец теΛа; с — теΛо в обΛасти вуΛьвы; d — хвост самки; е —суппΛементы; f — хвост самца. Масштаб: а — 10 мкм; e — 15 мкм; b, c, d, f — 30 мкм Fig. 1. Prochromadorella coralis sp. nov., male holotype (а, b, e, f) and female paratype (c, d): a — head; b — anterior body end; с — vulva region; d — female tail; е — supplements; f — male tail. Scale bars: а — 10 µm; e — 15 µm; b, c, d, f — 30 µm
Рис. 2. Фотографии Prochromadorella coralis sp. nov., гоΛотип самца (а, с, d, f, g, h, j) и паратип самки (b, e, i, k): a, b – общий виΑ; с – кутикуΛа; d, e – гоΛова; f – переΑний конец теΛа; g – теΛо в обΛасти кΛоаки; h – суппΛементы; i – теΛо в обΛасти вуΛьвы; j, k – хвост. Масштаб: а, b – 100 мкм; f, i, j, k – 20 мкм; c, d, e, g, h – 5 мкм Fig. 2. Light micrographs of Prochromadorella coralis sp. nov., male holotype (а, с, d, f, g, h, j) and female paratype (b, e, i, k): a, b — general view; с — cuticle; d, e — head; f — anterior body end; g — cloaca region; h — supplements; i — vulva region; j, k — tail. Scale bars: а, b — 100 µm; f, i, j, k — 20 µm; c, d, e, g, h — 5 µm in Two new species of the free-living nematodes (Nematoda, Chromadorea) from coral reefs of Vietnam
Рис. 2. Фотографии Prochromadorella coralis sp. nov., гоΛотип самца (а, с, d, f, g, h, j) и паратип самки (b, e, i, k): a, b – общий виΑ; с – кутикуΛа; d, e – гоΛова; f – переΑний конец теΛа; g – теΛо в обΛасти кΛоаки; h – суппΛементы; i – теΛо в обΛасти вуΛьвы; j, k – хвост. Масштаб: а, b – 100 мкм; f, i, j, k – 20 мкм; c, d, e, g, h – 5 мкм Fig. 2. Light micrographs of Prochromadorella coralis sp. nov., male holotype (а, с, d, f, g, h, j) and female paratype (b, e, i, k): a, b — general view; с — cuticle; d, e — head; f — anterior body end; g — cloaca region; h — supplements; i — vulva region; j, k — tail. Scale bars: а, b — 100 µm; f, i, j, k — 20 µm; c, d, e, g, h — 5 µm
Supplemental material to the article "Improving silent reading performance through feedback on eye movements: A feasibility study"
<p>This repository accompanies the article:</p> <p>Korinth, S., & Fiebach, C.J. (2018). Improving silent reading performance through feedback on eye movements: A feasibility study. Scientific Studies of Reading.</p> <p>For a more convenient download files were zipped. Organized into four subfolders it provides the data and the R-scripts allowing the replication of all analyses and the manuscript's figures. For further information please refer to the README.txt files in the individual subfolders.</p> <p>Please note, a former version of this repository contained the same data and the same analyses and was used for manuscript review purposes. Changes to the current version concern only the manuscript structure (i.e., analyses presented in previous manuscript version as appendices were integrated into the main text). </p>
Fruiting phenology patterns supplemental files
<p>Supplemental files from "Solar radiation and ENSO predict fruiting phenology patterns in a 15-year record from Kibale National Park, Uganda"</p>
20 GB in 10 minutes: Data linking across major biodiversity databases: Data supplements
<p>This supplementary data publication contains:</p> <p><strong>links-globi-wd-ott.tsv.gz:</strong> aggregate list of taxon graphs from Open Tree of Life Taxonomy (OTT), GloBI and Wikidata. This tab separated two column table, describe the taxonomic identifiers (e.g., NCBI:9606) that map into OTT, GloBI and Wikidata. For instance, the line "NCBI:9689{tab}WD:Q140" indicates that wikidata links their lion (<em>Panthera leo</em>, https://www.wikidata.org/wiki/Q140) to NCBI's lion (<em>Panthera leo</em>, https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9689).</p> <p><strong>wikidata-taxon-info20171227.tsv.gz: </strong>a terse 5 column file in tab-separated format of taxon objects extracted from WikiData. (2018). Wikidata dump 2017-12-27 [Data set]. Zenodo. http://doi.org/10.5281/zenodo.1211767 . The columns contain the following:</p> <ol> <li>wikidata taxon item id (e.g., Q140 or https://www.wikidata.org/wiki/Q140)</li> <li>scientific name of taxon item id (e.g., Panthera leo, Mammalia)</li> <li>rank id of the taxon item id (e.g., Q7432 species or https://www.wikidata.org/wiki/Q7432). To retrieve a full list of wikidata taxon rank ids and their common names, you can use sparql to query wikidata (e.g., <a href="https://github.com/globalbioticinteractions/nomer/blob/c3a1f5a2ebfb87ffc67e3bace19b82d96c0d25e8/nomer/src/main/java/org/globalbioticinteractions/nomer/util/WikidataTaxonRankLoader.java">Nomer's WikidataTaxonRankLoader</a> ). </li> <li>parent ids if taxon item id using pipes "|" as separators if there's multiple parents. Please note that some taxon items have multiple parents (e.g., https://www.wikidata.org/wiki/Q774014).</li> <li>external taxonomic identifiers that taxon item link to (e.g. "ITIS:162532|EOL:8266|GBIF:2960|WORMS:125440") . If muliple are present, pipes "|" are used to separate the links. Only a selection of taxonomic schemes was used, namely: NCBI, GBIF, ITIS, WORMS, FISHBASE, IF (index fungorum) and EOL.</li> </ol> <p>The datasets can be recreated by scripts in https://github.com/bio-guoda/guoda-datasets/tree/master/wikidata or <a href="https://doi.org/10.5281/zenodo.1428949">https://doi.org/10.5281/zenodo.1428949</a> .</p>
Dog gut gene catalog. Supplemental data for "Similarity of the dog and human gut microbiomes in gene content and response to diet"
<p>Gene catalogue for the dog gut microbiome including</p> <ol> <li>FASTA file of nucleotide sequences (including padding, see coords file for exact coordinates)</li> <li>FASTA file of amino-acid sequences</li> <li>coords file (gene coordinates)</li> <li>Taxonomic predictions</li> <li>Functional predictions</li> </ol> <p>See the paper "<em>Similarity of the dog and human gut microbiomes in gene content and response to diet</em>" by Coelho et al. in Microbiome for details. We ask that you cite that publication when using this dataset in published literature</p>
Supplemental Materials to Accompany: Abowd and Schmutte "An Economic Analysis of Privacy Protection and Statistical Accuracy as Social Choices"
<p>Materials to supplement "<a href="https://www.aeaweb.org/articles?id=10.1257/aer.20170627">An Economic Analysis of Privacy Protection and Statistical Accuracy as Social Choices</a>" by John Abowd and Ian Schmutte.</p>
Supplemental dataset for "Weather field reconstruction using aircraft surveillance data and a novel meteo-particle model"
<p>This dataset contains the source data used for the experiments of the paper titled "Weather field reconstruction using aircraft surveillance data and a novel meteo-particle model".</p>
Citations to Astronomy Journals 1: The growth of interdisciplinarity - Data Supplement
<p>This repository contains the data used in the blog "Citations to Astronomy Journals 1: The growth of interdisciplinarity", Michael J. Kurtz and Edwin Henneken. Each file has a header with a description of the data contained in the file. Table 1 consists of the bibstems for the journals in the main sample. Table 2 contains the individual data for each journal in the format journal, indicator, value, year. Table 3 has these data for all refereed journals (including the journals in the main sample, and all the rest). All three data files are ASCII files with space-separated columns.</p> <p>The term "bibstem" is the journal abbreviation used within the Astrophysics Data System. The complete list of bibstems is provided here: http://adsabs.harvard.edu/abs_doc/journals2.html. The bibstem is used in the ADS bibliographic identifier ("bibcode") with the convention that ampersands are replaced by plus signs (see: http://adsabs.github.io/help/actions/bibcode).</p>
Supplement data for the article "The impact of OTU sequence similarity threshold on diatom-based bioassessment: A case study of the rivers of Mayotte (France, Indian Ocean)", in preparation
<p>These are supplement data for the article "The impact of OTU sequence similarity threshold on diatom-based bioassessment: A case study of the rivers of Mayotte (France, Indian Ocean)", in preparation</p> <p>The folowing files are available:</p> <ul> <li>Supplement 1. Map of Mayotte with the sampling sites and the rivers.</li> <li>Supplement 2. <em>rbcL</em> primers, reaction mixture, and conditions used for the PCR of the 312-bp <em>rbcL</em> fragment. The information provided is for a single reaction with a final volume of 25µL.</li> <li>Supplement 3. The 20 fastq files containing the demultiplexed DNA reads.</li> <li>Supplement 4. Number of sequence reads for each sample before and after the trimming procedure.</li> <li>Supplement 5. The 20 OTU lists, corresponding to the 20 SSTs, including the number of DNA reads within the 90 samples and their assigned taxonomy.</li> <li>Supplement 6. Sampling site description with sample codes, names of rivers, year, number of raw DNA reads and GPS coordinates.</li> <li>Supplement 7. Values and summary statistics for the environmental variables.</li> <li>Supplement 8. The script used in Mothur for the bioinformatic analysis from trimming to the used OTU lists.</li> </ul> <p> </p>
Supplemental Material: Consolidating the concept of low-energy magnetic dipole decay radiation
<p>This record consists of all shell model calculation results used in Midtbø <em>et al</em>., <em>Consolidating the picture of low-energy magnetic dipole decay radiation, </em>Phys. Rev. C (2018, accepted), arXiv:1807.04036 [nucl-th].</p> <p>All calculations are performed using KSHELL (arXiv:1310.5431 [nucl-th]). For details on our calculations we refer to our article.</p>
Characterizing Novel Olfactory Receptors Expressed in the Murine Renal Cortex: Supplemental Table S1
<p><strong>Ligand screening of Olfr90, Olfr461, Olfr558, Olfr1034, and Olfr1396.</strong> The complete screening results of all compounds tested on all 5 murine ORs. Compounds were tested at 0.5 mM unless otherwise specified. “+” indicates robust statistically signification activation, while “–” indicates no response. ORs listed in the Classification column are siblings of tested ORs. The term “general” is used for compounds in our library that are commonly used to screen ORs, and “biofluids” refers to compounds listed in the Human Metabolome Database which are detected in biofluids such as blood, urine, etc.</p> <p> </p> <p> </p>
Supplemental Data from: Association Between Mutation Clearance After Induction Therapy and Outcomes in Acute Myeloid Leukemia
<p>Supplemental Data for:</p> <p>Association Between Mutation Clearance After Induction Therapy and Outcomes in Acute Myeloid Leukemia. JAMA. 2015<br> (Paper available at: <a href="https://www.ncbi.nlm.nih.gov/pubmed/26305651">PubMed</a> <a href="https://jamanetwork.com/journals/jama/fullarticle/2429715">JAMA</a>)<br> <br> Authors: Jeffery M. Klco, M.D., Ph.D.* Christopher A. Miller, Ph.D.*, Malachi Griffith, Ph.D., Allegra Petti, Ph.D., David H. Spencer, M.D., Ph.D., Shamika Ketkar-Kulkarni, M.S., Lukas D. Wartman, M.D., Matthew Christopher, M.D., Ph.D., Tamara L. Lamprecht, B.S., Nicole M. Helton, B.S., Eric J. Duncavage, M.D., Jacqueline E. Payton, M.D., Ph.D., Jack Baty, B.A., Sharon E. Heath, Obi L. Griffith, Ph.D., Dong Shen, Ph.D., Jasreet Hundal, M.S., Gue Su Chang, Ph.D., Robert Fulton, M.S., Michelle O'Laughlin, B.S., Catrina Fronick, B.S., Vincent Magrini, Ph.D., Ryan T. Demeter, B.E., David E. Larson, Ph.D., Shashikant Kulkarni, M.S., Ph.D., Bradley A. Ozenberger, Ph.D., John S. Welch, M.D., Ph.D., Matthew J. Walter, M.D., Timothy A. Graubert, M.D., Peter Westervelt, M.D., Ph.D., Jerald P. Radich, M.D., Daniel C. Link, M.D., Elaine R. Mardis, Ph.D., John F. DiPersio, M.D., Ph.D., Richard K. Wilson, Ph.D., and Timothy J. Ley</p>
Supplemental Figure 1 for Macrophage Secreted TGF-β1 Contributes to Fibroblast Activation and Ureteral Stricture Following Ablation Injury
<p>Supplemental Figure 1. TGF-β1 (brown) and Masson Trichrome (blue) staining of healthy ureteral wall adjacent to the site of IRE treatment. A-D) Sparse numbers of spindle shaped cells (fibroblasts, arrows) can be seen in healthy ureter adjacent to IRE treated ureter but their numbers were not different from what was observed in untreated control ureter. F-H) Ureteral wall adjacent to the site of IRE treatment stains positive for collagen (blue) but the levels remain invariant through different timepoints. The muscularis (asterisk) of the ureteral wall is preserved, with no evidence of scarring.</p>
Supplemental Raw Data for Imboden et al., High-speed mechano-active multielectrode array for investigating rapid stretch effects on cardiac tissue
<p>The file contains the central raw data underlying Figure 5 and, in the supplementary material, Figure 13 of the article 'High-speed mechano-active multielectrode array for investigating rapid stretch effects on cardiac tissue'.</p>
Supplements to "Digital traces of climate risks: assessing the communication impact of Paris resilience strategy".
<p>These supplements correspond the data used in the PhD thesis : “Digital traces of climate risks: assessing the impact of Paris resilience strategy”, published in 2019 on <a href="http://theses.fr/">theses.fr</a> by Rosa Vicari (HM&Co - École des Ponts ParisTech), under the supervision of Daniel Schertzer (HM&Co - École des Ponts ParisTech).</p> <p>More precisely the data set corresponds to the corpora and term lists that are used in the analysis (based on advanced text mining and graph representation) of press articles and tweets concerning flood events in France and strategic documents released by public authorities.</p> <p>The dataset includes the following files:</p> <p>- Suppl2-2016Parisflood-termlist.csv : the list of terms extracted from the corpus of press articles covering the 2016 Seine River flood.</p> <p>- Suppl6-Cotedazflood-termlist.csv: the list of terms extracted from the corpus of press articles covering the 2015 Côte-d'Azur flood.</p> <p>- Suppl7-Corpus-PA-Strategies.csv : the corpus of strategic documents released by public authorities to cope with flood risk in Paris.</p> <p>- Suppl8-Term-list-PA-Strategies.csv : the list of terms extracted from the corpus of strategic documents released by public authorities to cope with flood risk in Paris (2003 - 2017).</p> <p>The following files are not available and cannot be shared for copyright reasons:</p> <p>- Suppl1-2016Parisflood-corpus.csv : the corpus of press articles covering the 2016 Seine River flood.</p> <p>- Suppl3-2018Parisflood-corpus.csv : the corpus of press articles covering the 2018 Seine River flood.</p> <p>- Suppl5-Cotedazflood-corpus.csv : the corpus of press articles covering the 2015 Côte-d'Azur flood.</p> <p>The following file is not available and cannot be shared for privacy reasons:</p> <p>- Suppl4 - Tweet corpus - 2016 Paris flood.csv : the corpus of tweets covering the 2016 Seine River flood.</p>
Data supplement to: "Refractory depression - Mechanisms & Efficacy of Radically Open Dialectical Behaviour Therapy (RefraMED): findings of randomised trial on benefits and harms"
<p>Data and code to support primary analyses reported in "Refractory depression – mechanisms and efficacy of radically open dialectical behaviour therapy (RefraMED): findings of a randomised trial on benefits and harms". British Journal of Psychiatry. doi: 10.1192/bjp.2019.53</p>
Video supplement: A three-dimensional palaeo-reconstruction of the groundwater salinity distribution in the Nile Delta Aquifer
<p>Videos of validated models. The filenames indicate simulation code, for explanation see accompanying paper, submitted to HESS.</p> <p><strong>Abstract</strong></p> <p>The Nile Delta is an important agricultural area with a fast-growing population. Though traditionally irrigated with surface water, the delta increasingly relies on groundwater. However, saline groundwater extends far land inward, rendering groundwater close to the coastal zone useless for consumption or agriculture. To aid groundwater management decisions, hydrogeologists reconstructed this saline and brackish groundwater zone using variable-density groundwater models with very large dispersivities. However, this approach cannot explain the observed freshening of this zone as observed by hydrogeochemists, who hypothesize that the coastal saline zone is the effect of the Holocene transgression. Here, we investigated physical plausibility of this hypothesis by conducting a palaeo-reconstruction of groundwater salinity for the last 32 ka with a complex 3D variable-density groundwater flow model, using state-of-the-art model code that allows for parallel computation. Several scenarios with different lithologies and hypersaline groundwater provenances were simulated, of which five were selected that showed the best match with the observations. Amongst these selections, total fresh water volumes varied strongly, ranging from 1526 to 2659 km3, mainly due to uncertainties in the lithology offshore and at larger depths. This range is smaller (1511-1989 km3) when we consider the volumes of onshore fresh groundwater within 300 m depth. Regardless of the variance, in all cases the total volume of hypersaline groundwater exceeded that of sea water. We also show that during the last 32 ka, the total fresh groundwater volumes significantly declined, with a factor ranging from 1.9 to 5.4, due to the rising sea-level. Compared to a steady-state solution with present-day boundary conditions, the palaeo-reconstruction improved our validation for the saline zone (5 g/L – 35 g/L TDS). Also, under highly permeable conditions the marine transgression simulated with the palaeo-reconstruction led to a steeper fresh-salt interface compared to its steady-state equivalent, while low permeable clay layers allowed for the preservation of volumes of fresh groundwater. This shows that long-term transient simulations are needed when estimating present-day fresh-salt groundwater distribution in large deltas. The insights of this study are also applicable to other major deltaic areas, given the wide-range of lithological model scenarios used in this study and since many deltas also experienced a Holocene marine transgression.</p>
Supplementing data and code for: "Correlation of mRNA delivery timing and protein expression in lipid-based transfection"
<p>Supplementary data and code for Reiser <em>et al.</em>: Correlation of mRNA delivery timing and protein expression in lipid-based transfection. 2019, <a href="https://doi.org/10.1093/intbio/zyz030">doi:10.1093/intbio/zyz030</a>.</p> <p>See `README.pdf` for further details.</p>
Characterizing Novel Olfactory Receptors Expressed in the Murine Renal Cortex: Supplemental Table S2
<p><strong>Olfactory receptors selected for study. </strong>Olfactory receptors (ORs) selected for study based on mapped reads in at least 7 out of 8 murine renal cortex samples. Murine samples are listed as A - M. Samples A - G were fed high fat diet, while samples I - M were fed control diet. (mm10) FPKM counts for ORs selected for study based on the GRCm30/mm10 genome build using previously published OR coordinates. ORs are listed using the "Olfr" gene names, as well as the "CUFFOR" names as determined by Ibarra-Soria X et al. (mm9) FPKM counts for ORs selected for study based on the NCBI37/mm9 genome build using established coordinates. ORs listed in green were identified and cloned from kidney RNA previously.</p> <p> </p> <p>Data accessible at NCBI GEO database, accession number GSE117249<br> https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117249</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.