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Supplementary material 1 from: Conrado AC, Arruda H, Stanton DWG, James SW, Kille P, Brown G, Silva E, Dupont L, Taheri S, Morgan AJ, Simões N, Rodrigues A, Montiel R, Cunha L (2017) The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning. ZooKeys 688: 1-13. https://doi.org/10.3897/zookeys.688.13721
Inferred secondary structure of 22 tRNA genes in the mitochondrial DNA of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata). :
Fig. 4 in Expanded morphological definition and molecular phylogenetic position of the Tam Dao mountain stream keelback Opisthotropis tamdaoensis (Squamata: Natricidae) from Vietnam
Fig. 4. Lateral views of two of the newly collected Opisthotropis lateralis in life. (A) Male ZFMK 100805. (B) Juvenile ZFMK 100806; the characteristic black lateral stripe that sharply separates the dark dorsal colouration from the light venter is well discernible. Photos: T. Ziegler
Fig. 2 in Expanded morphological definition and molecular phylogenetic position of the Tam Dao mountain stream keelback Opisthotropis tamdaoensis (Squamata: Natricidae) from Vietnam
Fig. 2. Characteristic feature of Opisthotropis tamdaoensis: the black lateral stripe in the midst of the dark dorsal colouration. (A) Male ZFMK 100000 (left), and female IEBR A.1016.32 (right) in preserved state. (B) Detail of the body side of the female IEBR A.1016.33 in preserved state. Photos: T. Ziegler
Fig. 5 in Expanded morphological definition and molecular phylogenetic position of the Tam Dao mountain stream keelback Opisthotropis tamdaoensis (Squamata: Natricidae) from Vietnam
Fig. 5. Combined Bayesian phylogram based on a partial cytochrome b fragment. Numbers above and under branches are MP/combined ML/partitioned ML bootstrap values and combined/partitioned Bayesian posterior probabilities (>50%), respectively. Hyphen and asterisk denote <50% and 100% values, respectively.
FIGURE 9. A in Systematic position of the Afrotropical species described in Trachyphloeini (Coleoptera: Curculionidae: Entiminae)
FIGURE 9. A—"Trachyphloeus" brevis Boheman, 1842, Lectotype, and its labels. B—"Trachyphloeus" squalidus Boheman, 1842, habitus, male, dorsal view, Lectotype, and its labels. Scale bar: 1 mm.
FIGURE 8 in Systematic position of the Afrotropical species described in Trachyphloeini (Coleoptera: Curculionidae: Entiminae)
FIGURE 8. Tapinomorphus franzi sp. nov., Holotype, female. A—habitus, dorsal view, scale bar: 1 mm, and its labels, B— rostrum, dorsal view, C—rostrum, lateral view, D—protibia, E—spermatheca, scale bar: 0.5 mm.
FIGURE 6. A in Systematic position of the Afrotropical species described in Trachyphloeini (Coleoptera: Curculionidae: Entiminae)
FIGURE 6. A—Perarogula lamottei Hoffmann, 1963, habitus, male, dorsal view, Paratype, and its labels. B—Platycopes tuberculatus Marshall, 1906, habitus, male, dorsal view. Scale bar: 1 mm.
FIGURE 7. A in Systematic position of the Afrotropical species described in Trachyphloeini (Coleoptera: Curculionidae: Entiminae)
FIGURE 7. A—Tapinomorphus sylvicola Voss, 1962, habitus, male, dorsal view, Lectotype of Cathormiocerus africanus Hoffmann, 1965, and its labels. B—"Trachyphloeosoma" brevicolle Voss, 1974, habitus, male, dorsal view, Holotype, and its labels. Scale bar: 1 mm.
FIGURE 3. A in Systematic position of the Afrotropical species described in Trachyphloeini (Coleoptera: Curculionidae: Entiminae)
FIGURE 3. A—Pentatrachyphloeus nanus (Fåhraeus, 1871), habitus, male, dorsal view, Lectotype, and its labels. B— Pentatrachyphloeus patruelis Voss, 1974, habitus, male, dorsal view, Holotype, and its labels. Scale bar: 1 mm.
FIGURE 4. Phaylomerinthus cinereus Boheman, 1842, female. A in Systematic position of the Afrotropical species described in Trachyphloeini (Coleoptera: Curculionidae: Entiminae)
FIGURE 4. Phaylomerinthus cinereus Boheman, 1842, female. A—habitus, dorsal view, scale bar: 1 mm, and its labels, B— rostrum, dorsal view, C—rostrum, lateral view, D—protibia, E—spermatheca, scale bar: 0.5 mm.
FIGURE 2. A in Systematic position of the Afrotropical species described in Trachyphloeini (Coleoptera: Curculionidae: Entiminae)
FIGURE 2. A—Glyptosomus hardenbergi (Marshall, 1923), habitus, male, dorsal view. B—Glyptosomus notulatus (Boheman, 1842), habitus, male, dorsal view, Lectotype, and its labels. Scale bar: 1 mm.
FIGURE 5. A in Systematic position of the Afrotropical species described in Trachyphloeini (Coleoptera: Curculionidae: Entiminae)
FIGURE 5. A—Phaylomerinthus convergens (Voss, 1962), habitus, male, dorsal view. B—Phaylomerinthus setiger (Fåhraeus, 1871), Lectotype, and its labels. Scale bar: 1 mm.
FIGURE 1. A in Systematic position of the Afrotropical species described in Trachyphloeini (Coleoptera: Curculionidae: Entiminae)
FIGURE 1. A—Afrophloeus spathulatus (Boheman, 1842), habitus, male, dorsal view, Lectotype, and its labels. B— Afrophloeus squamifer (Boheman, 1842), habitus, male, dorsal view, Lectotype, and its labels. Scale bar: 1 mm.
MHC-wide association results (uveitis-JIA vs non-uveitis JIA) conditioned on serine position 11 in HLA-DRB1
<p>Association results across the major histocompatibility complex (MHC) on chromosome 6, conditioned on serine (S) at position 11 in <em>HLA-DRB1</em>. Note that coordinates are on build hg18. Columns are:</p> <ol> <li>CHR: chromosome</li> <li>SNP: SNP identifier</li> <li>BP: basepair position (hg18)</li> <li>A1: minor allele/tested allele</li> <li>A2: other allele (major allele)</li> <li>FRQ: frequency of the A1 allele</li> <li>INFO: imputation quality info score</li> <li>OR: odds ratio</li> <li>SE: standard error of the t-statistic (note that the t-statistic is not provided in the file)</li> <li>P: p-value of the SNP</li> </ol>
MHC-wide association results (uveitis-JIA vs non-uveitis JIA) conditioned on aspartic acid position 11 in HLA-DRB1
<p>Association results across the major histocompatibility complex (MHC) on chromosome 6, conditioned on aspartic acid (D) at position 11 in <em>HLA-DRB1</em>. Note that coordinates are on build hg18. Columns are:</p> <ol> <li>CHR: chromosome</li> <li>SNP: SNP identifier</li> <li>BP: basepair position (hg18)</li> <li>A1: minor allele/tested allele</li> <li>A2: other allele (major allele)</li> <li>FRQ: frequency of the A1 allele</li> <li>INFO: imputation quality info score</li> <li>OR: odds ratio</li> <li>SE: standard error of the t-statistic (note that the t-statistic is not provided in the file)</li> <li>P: p-value of the SNP</li> </ol>
FIGURE 1 in Indels ascertain the phylogenetic position of Coleodactylus elizae Gonçalves, Torquato, Skuk & Sena, 2012 (Gekkota: Sphaerodactylidae)
FIGURE 1. Bayesian tree topology (consensus by majority rule 50%) of sphaerodactyl geckos obtained from 1828 base pairs of concatenated nuclear genes (RAG1 and PTPN12). Closed circles indicate nodes with posterior probabilities ≥ 0.95. Indels from protein-coding regions are indicated along with the gene name, PTPN12 in Chatogekko clade and RAG1 in Coleodactylus clade. RAG1 possessed multiple unique indels and each is numbered sequentially in 5′–3′ direction following Gamble et al. 2011b. Taxon names are shown on the right followed by GenBank accession number of PTPN12 and RAG1 genes respectively.
FIGURES 17–19 in Taxonomy of 'Euconnus complex'. Part XVI. Alloconophron Franz transferred to Anhoraeomorphus Franz as subgenus, with notes on systematic position of Noctophus Casey (Coleoptera, Staphylinidae, Scydmaeninae)
FIGURES 17–19. Morphological structures of Euconnus (Noctophus) schmitti (Casey) (17¯18) and original set of labels of holotype female (19). Pterothorax and abdomen in ventral view (17); left protibia and tarsus in ventral view. Abbreviations: ar, anterior ridge; msvp, mesoventral intercoxal process; mtvp, metaventral intercoxal process; pcr, procoxal rest.
FIGURES 14–16 in Taxonomy of 'Euconnus complex'. Part XVI. Alloconophron Franz transferred to Anhoraeomorphus Franz as subgenus, with notes on systematic position of Noctophus Casey (Coleoptera, Staphylinidae, Scydmaeninae)
FIGURES 14–16. Morphological structures of Euconnus (Noctophus) schmitti (Casey). Dorsal habitus of holotype female (14); head, prothorax and elytral base in dorsal view (15); head, prothorax and anterior portion of pterothorax in ventral view (16). Abbreviations: abp, antebasal pit; bef, basal elytral fovea; bst, basisternal part of prosternum; hr, hypostomal ridge; hyr, hypomeral ridge; ptp, posterior tentorial pit; nss, notosternal suture; smn, submentum.
FIGURES 12–13 in Taxonomy of 'Euconnus complex'. Part XVI. Alloconophron Franz transferred to Anhoraeomorphus Franz as subgenus, with notes on systematic position of Noctophus Casey (Coleoptera, Staphylinidae, Scydmaeninae)
FIGURES 12–13. Morphological structures of Anhoraeomorphus obscurus Franz (12) and original set of labels of holotype female (13). Pterothorax in ventral view (12). Abbreviations: ar, anterior ridge; msvp, mesoventral intercoxal process; mtvp, metaventral intercoxal process; pcr, procoxal rest.
FIGURES 10–11 in Taxonomy of 'Euconnus complex'. Part XVI. Alloconophron Franz transferred to Anhoraeomorphus Franz as subgenus, with notes on systematic position of Noctophus Casey (Coleoptera, Staphylinidae, Scydmaeninae)
FIGURES 10–11. Morphological structures of Anhoraeomorphus obscurus Franz. Head, prothorax and elytral base in dorsal view (10); head and prothorax in ventral view (11). Abbreviations: bef, basal elytral fovea; bst, basisternal part of prosternum; hr, hypostomal ridge; hyr, hypomeral ridge; ptp, posterior tentorial pit; nss, notosternal suture; slc, sublateral carina; smn, submentum.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.