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Figure 7 from: Espinosa M, López J (2013) Herbarium of Vascular Plants Collection of the University of Extremadura (Spain). PhytoKeys 25: 1-13. https://doi.org/10.3897/phytokeys.25.5341
Figure 7 - Geographical distribution of specimens in (a) Morocco and (b) Brazil.
Figure 3 from: Espinosa M, López J (2013) Herbarium of Vascular Plants Collection of the University of Extremadura (Spain). PhytoKeys 25: 1-13. https://doi.org/10.3897/phytokeys.25.5341
Figure 3 - Taxonomic coverage (as per genus) of the UNEX Herbarium.
Figure 1 from: Espinosa M, López J (2013) Herbarium of Vascular Plants Collection of the University of Extremadura (Spain). PhytoKeys 25: 1-13. https://doi.org/10.3897/phytokeys.25.5341
Figure 1 - Taxonomic coverage (as per classes) of the UNEX Herbarium.
Figure 1 from: Brosens D, Van Landuyt W, Vanhecke L (2012) Florabank1: a grid-based database on vascular plant distribution in the northern part of Belgium (Flanders and the Brussels Capital region). PhytoKeys 12: 59-67. https://doi.org/10.3897/phytokeys.12.2849
Figure 1 - Taxonomic coverage of Florabank1
Figure 1 from: Just A, Gourvil J, Millet J, Boullet V, Milon T, Mandon I, Dutrève B (2015) SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories. PhytoKeys 56: 47-60. https://doi.org/10.3897/phytokeys.56.5723
Figure 1 - Distribution of the dataset by family.
Figure 2 from: Just A, Gourvil J, Millet J, Boullet V, Milon T, Mandon I, Dutrève B (2015) SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories. PhytoKeys 56: 47-60. https://doi.org/10.3897/phytokeys.56.5723
Figure 2 - Temporal distribution of records by decade (shown on logarithmic scale).
Figure 2 from: Freitas L, Salino A, Neto LM, Almeida TE, Mortara SR, Stehmann JR, Amorim AM, Guimarãe EF, Coelho MN, Zanin A, Forzza RC (2016) A comprehensive checklist of vascular epiphytes of the Atlantic Forest reveals outstanding endemic rates. PhytoKeys 58: 65-79. https://doi.org/10.3897/phytokeys.58.5643
Figure 2 - Family representativeness of Atlantic Forest fern and lycophyte epiphyte species.
Figure 1 from: Freitas L, Salino A, Neto LM, Almeida TE, Mortara SR, Stehmann JR, Amorim AM, Guimarãe EF, Coelho MN, Zanin A, Forzza RC (2016) A comprehensive checklist of vascular epiphytes of the Atlantic Forest reveals outstanding endemic rates. PhytoKeys 58: 65-79. https://doi.org/10.3897/phytokeys.58.5643
Figure 1 - Family representativeness of Atlantic Forest vascular epiphyte species.
Figure 8 from: Gillespie LJ, Saarela JM, Sokoloff PC, Bull RD (2015) New vascular plant records for the Canadian Arctic Archipelago. PhytoKeys 52: 23-79. https://doi.org/10.3897/phytokeys.52.8721
Figure 8 - Hordeum jubatum subsp. jubatum: habitat, Saarela et al. 2737. Photograph by R.D. Bull.
Figure 10 from: Gillespie LJ, Saarela JM, Sokoloff PC, Bull RD (2015) New vascular plant records for the Canadian Arctic Archipelago. PhytoKeys 52: 23-79. https://doi.org/10.3897/phytokeys.52.8721
Figure 10 - Stuckenia vaginata: A habitat B habit, Gillespie et al. 8048. Photographs by R.D. Bull.
Figure 3 from: Goyder DJ, Barker N, Bester SP, Frisby A, Janks M, Gonçalves FMP (2018) The Cuito catchment of the Okavango system: a vascular plant checklist for the Angolan headwaters. PhytoKeys 113: 1-31. https://doi.org/10.3897/phytokeys.113.30439
Figure 3 Locations visited during 2015 and 2016 surveys.
3D reconstruction of skin and spatial mapping of immune cell density, vascular distance and effects of sun exposure and aging
<p>Mapping the human body at single cell resolution in three dimensions (3D) is an important step toward a “digital twin” model that digitizes organ structure and the dynamics of cell-cell interactions. Current approaches for 3D reconstruction of multiplexed serial sections are relatively cumbersome and not automated. We present a novel 3D reconstruction workflow for multiplexed sequential tissue sections: MATRICS-A (Multiplexed Image Three-D Reconstruction and Integrated Cell Spatial - Analysis). This combines a reproducible and streamlined method for two-dimensional (2D) cell segmentation and cell type classification, followed by 3D volume reconstruction. We also provide novel tools for 3D visualization of immune cell cluster density, cell-to-vasculature distance, and distance maps for cellular markers of UV damage/repair and proliferation to the skin surface. We used MATRICS-A to reconstruct 26 serial sections of fixed skin from 12 donors aged between 32-72 years. Samples were collected from six distinct anatomical regions with mild to marked sun exposure effects. Each tissue section was multiplexed with 18 fluorescently labeled antibodies covering 14 cell types in the epidermis and dermis. We demonstrate several new findings that are only possible in 3D, We present novel visualization of immune cell clusters and show that there are 10-70% more T cells (total) within 30 µm of a T helper cell in 3D vs 2D. Distances of cell markers of DNA damage (p53), DNA repair (DDB2) and proliferation (Ki67) to the skin surface were consistent across all ages/sun exposure. MATRICS-A provides a new powerful integrated open access approach to quantify 3D spatial cell relationships in healthy and aging organs and could be further extended to diseased organs. </p>
Supplementary information for "Non-destructive evaluation of ductile-porous versus brittle 3D printed vascular networks in self-healing concrete"
Open the record for dataset details and reuse information.
Acute Effects of Vinyasa Yoga on Vascular Function
ClinicalTrials.gov study NCT04226235. IPD Sharing: NO. Countries: 1. Publications: 0.
Evaluation of Retinal and Vascular Features in Macular Degeneration After Intravitreal Injections of Bevacizumab
ClinicalTrials.gov study NCT04138420. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Vascular Function Improvements After Chronic Passive Stretching
ClinicalTrials.gov study NCT04271241. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Short Term Effects of Probiotics in the Human Micro-vascular Physiology
ClinicalTrials.gov study NCT05234645. IPD Sharing: NO. Countries: 1. Publications: 0.
The Role of the Space Environment on Vascular Endothelial and Smooth Muscle Cell Processes
ClinicalTrials.gov study NCT03156257. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Vascular Basis for the Treatment of Ischemia
ClinicalTrials.gov study NCT00005681. IPD Sharing: Not stated. Countries: 0. Publications: 7.
Heart Coherence Training on Vascular Ehlers-Danlos Syndrome Patients
ClinicalTrials.gov study NCT05994664. IPD Sharing: Not stated. Countries: 1. Publications: 0.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.