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3,878 results for “Molecular Data”
Fig. 3 in A new species of Casmaria H. Adams & A. Adams, 1853 (Gastropoda, Cassidae) from the Philippines identified by molecular data
Fig. 3. Distributions of Casmaria turgida (short-dashed line and triangles), C. unicolor (dashed line and filled circles) and C. boblehmani sp. nov. (solid line and squares) in the Indo-Pacific.
Data from: A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution
C. elegans is an animal with few cells, but a striking diversity of cell types. Here, we characterize the molecular basis for their specification by profiling the transcriptomes of 86,024 single embryonic cells. We identify 502 terminal and pre-terminal cell types, mapping most single cell transcriptomes to their exact position in C. elegans' invariant lineage. Using these annotations, we find that: 1) the correlation between a cell's lineage and its transcriptome increases from mid to late gastrulation, then falls dramatically as cells in the nervous system and pharynx adopt their terminal fates; 2) multilineage priming contributes to the differentiation of sister cells at dozens of lineage branches; and 3) most distinct lineages that produce the same anatomical cell type converge to a homogenous transcriptomic state.
Figure 4 from: Liu H-Y, Li Y-C, Bau T (2020) New species of Retiboletus (Boletales, Boletaceae) from China based on morphological and molecular data. MycoKeys 67: 33-44. https://doi.org/10.3897/mycokeys.67.51020
Figure 4 Microscopic features of R. sinogriseus (KUN-HKAS 912889). a Basidiospores b basidia and pleurocystidium c pleurocystidia d cheilocystidia e pileipellis. Scale bars: 10 μm.
Figure 3 from: Liu H-Y, Li Y-C, Bau T (2020) New species of Retiboletus (Boletales, Boletaceae) from China based on morphological and molecular data. MycoKeys 67: 33-44. https://doi.org/10.3897/mycokeys.67.51020
Figure 3 Microscopic features of R. ater (KUN-HKAS 56069). a Basidiospores b basidia and pleurocystidium c cheilo- and pleurocystidia d pileipellis. Scale bars: 10 μm.
Figure 2 from: Liu H-Y, Li Y-C, Bau T (2020) New species of Retiboletus (Boletales, Boletaceae) from China based on morphological and molecular data. MycoKeys 67: 33-44. https://doi.org/10.3897/mycokeys.67.51020
Figure 2 Habitat of the new Retiboletus species. a–cR. ater (from KUN-HKAS 56069) d–fR. sinogriseus (d from KUN-HKAS 91288 e–f from KUN-HKAS 91286).
Figure 1 from: Liu H-Y, Li Y-C, Bau T (2020) New species of Retiboletus (Boletales, Boletaceae) from China based on morphological and molecular data. MycoKeys 67: 33-44. https://doi.org/10.3897/mycokeys.67.51020
Figure 1 Maximum likelihood phylogenetic tree of Retiboletus inferred from the combined nuclear dataset (nrLSU + TEF1-α). Bootstrap frequencies (> 50%) are shown above supported branches. Newly sequenced collections are boldfaced in black. Species vouchers are provided after the species name.
Supplementary material 1 from: Colavite J, Windsor AM, Santana W (2020) A new genus for Pericera septemspinosa Stimpson, 1871 and Pericera heptacantha Bell, 1836 (Crustacea, Brachyura, Majoidea), based on morphology and molecular data. Zoosystematics and Evolution 96(1): 205-216. https://doi.org/10.3897/zse.96.50360
Table S1
Figure 2 from: Colavite J, Windsor AM, Santana W (2020) A new genus for Pericera septemspinosa Stimpson, 1871 and Pericera heptacantha Bell, 1836 (Crustacea, Brachyura, Majoidea), based on morphology and molecular data. Zoosystematics and Evolution 96(1): 205-216. https://doi.org/10.3897/zse.96.50360
Figure 2 Pohleus septemspinosus (Stimpson, 1871) gen. nov. et comb. nov. A, B. male, (USNM 1256361); C. male (USNM 241030); D. sterno-pleonal cavity with first (G1) and second (G2) gonopods in place (USNM 1256361). Macrocoeloma trispinosum (Latreille, 1825); E, F. male (USNM 17959). A, E. habitus; B, F. ventral view; C. frontal view; D. pleonal view in detail. Note the spine of the basal article of antenna (white arrow); pterygostomial spine (grey arrow); margin of the IV sternite thoracic (black arrow). Scale bars: 10 mm.
Figure 3 from: Colavite J, Windsor AM, Santana W (2020) A new genus for Pericera septemspinosa Stimpson, 1871 and Pericera heptacantha Bell, 1836 (Crustacea, Brachyura, Majoidea), based on morphology and molecular data. Zoosystematics and Evolution 96(1): 205-216. https://doi.org/10.3897/zse.96.50360
Figure 3 A. Habitus, dorsal view and B. ventral view of Pohleus septemspinosus (Stimpson, 1871) gen. nov. et comb. nov., female (R2 unnumbered). Colour in life with debris and algae for camouflage. Scale bars: 10 mm
Figure 1 from: Colavite J, Windsor AM, Santana W (2020) A new genus for Pericera septemspinosa Stimpson, 1871 and Pericera heptacantha Bell, 1836 (Crustacea, Brachyura, Majoidea), based on morphology and molecular data. Zoosystematics and Evolution 96(1): 205-216. https://doi.org/10.3897/zse.96.50360
Figure 1 Molecular phylogenetic tree represented as maximum likelihood topology of two mitochondrial and one nuclear loci (12S, 16S and 18S) to place Pohleus septemspinosus (Stimpson, 1871) gen. nov. et comb. nov. based on six close genera. Nodal support values represent the frequencies observed, using 1000 bootstrap pseudo-replicates. Values below 50% are not represented.
Figure 4 from: Colavite J, Windsor AM, Santana W (2020) A new genus for Pericera septemspinosa Stimpson, 1871 and Pericera heptacantha Bell, 1836 (Crustacea, Brachyura, Majoidea), based on morphology and molecular data. Zoosystematics and Evolution 96(1): 205-216. https://doi.org/10.3897/zse.96.50360
Figure 4 Geographic distribution Pohleus heptacanthus (Bell, 1836) gen. nov. et comb. nov.; orange circles = distribution based on examined material; green star = type locality and Pohleus septemspinosus (Stimpson, 1871) gen. nov. et comb. nov.; red circles = distribution based on examined material; yellow star = neotype locality.
Figure 5 from: Colavite J, Windsor AM, Santana W (2020) A new genus for Pericera septemspinosa Stimpson, 1871 and Pericera heptacantha Bell, 1836 (Crustacea, Brachyura, Majoidea), based on morphology and molecular data. Zoosystematics and Evolution 96(1): 205-216. https://doi.org/10.3897/zse.96.50360
Figure 5 Pohleus septemspinosus (Stimpson, 1871) gen. nov. et comb. nov. A, B. female (MNHN IU 2013-32682). Pohleus heptacanthus (Bell, 1836) gen. nov. et comb. nov.; C, D. female lectotype (OUM 13764). A, C. habitus; B, D. ventral view. Note the spine on merus of the second pereopod (white arrow). Scale bars: 10 mm.
Supplementary material 1 from: Wei Z, Zhang L, Shi A (2020) A note on the larva of Chalcophora japonica chinensis (Coleoptera, Buprestidae) based on morphological characters and molecular data. ZooKeys 944: 147-155. https://doi.org/10.3897/zookeys.944.37765
Detailed results of COI sequences dataset
Figure 2 from: Wei Z, Zhang L, Shi A (2020) A note on the larva of Chalcophora japonica chinensis (Coleoptera, Buprestidae) based on morphological characters and molecular data. ZooKeys 944: 147-155. https://doi.org/10.3897/zookeys.944.37765
Figure 2 Larval morphology of Chalcophora japonica chinensis Schaufuss, 1879 A, G epistome and mouth parts, in dorsal view B mouth parts, in ventral view C, J antenna D, K maxilla, in ventral view E, F thorax, in dorsal and ventral views H prementum I left mandible.
Figure 1 from: Wei Z, Zhang L, Shi A (2020) A note on the larva of Chalcophora japonica chinensis (Coleoptera, Buprestidae) based on morphological characters and molecular data. ZooKeys 944: 147-155. https://doi.org/10.3897/zookeys.944.37765
Figure 1 Habitus of Chalcophora japonica chinensis (Schaufuss, 1879) A adult, in dorsal view B larva, in dorsal view C larva in ventral view.
Figures 3 from: Wei Z, Zhang L, Shi A (2020) A note on the larva of Chalcophora japonica chinensis (Coleoptera, Buprestidae) based on morphological characters and molecular data. ZooKeys 944: 147-155. https://doi.org/10.3897/zookeys.944.37765
Figures 3 Larval pronotal plate of Chalcophora species (A–C from Bílý 1984) AC. detritaBC. marianaCC. intermediaDC. japonica chinensis.
Fig. 2 in New acoustic and molecular data shed light on the poorly known Amazonian frog Adenomera simonstuarti (Leptodactylidae): implications for distribution and conservation
Fig. 2. Geographic distribution of the Adenomera simonstuarti species complex in northwestern South America; genetic lineage 3 corresponds to the nominal species. Phylogenetic relationships among the eight lineages are shown on the upper right. Black solid-filled symbols represent the localities reported in the original description (square = type locality at Camisea, Peru; circle = Pando, Bolivia). Blackdotted symbols indicate newly collected specimens from the Juruá River in the Brazilian Amazonia.
Fig. 1 in New acoustic and molecular data shed light on the poorly known Amazonian frog Adenomera simonstuarti (Leptodactylidae): implications for distribution and conservation
Fig. 1. Bayesian phylogenetic tree of Adenomera Steindachner, 1867 inferred from a concatenated dataset of four genes (two mitochondrial + two nuclear), showing the eight major clades delimited by colors. The emphasis on the diversification within the A. simonstuarti species complex shows a deep genetic divergence, with eight distinct lineages (see Fig. 2 for geographic distribution). Symbols above branches indicate posterior probabilities of Bayesian inference (BI) and those below branches indicate bootstraps of maximum likelihood inference (ML). Low support values (BI <80 and ML <70) were omitted. Branch scale is indicated in number of substitution per site.
Fig. 5 in New acoustic and molecular data shed light on the poorly known Amazonian frog Adenomera simonstuarti (Leptodactylidae): implications for distribution and conservation
Fig. 5. Advertisement calls of (A–B) nominal Adenomera simonstuarti (Angulo & Icochea, 2010) (= genetic lineage 3) from the upper Juruá River, in southwestern Amazonia of the Brazilian state of Acre (voucher INPA-H 40976), and (C–D) the sympatric Adenomera sp. from Camisea, in the Region of Cusco, Peru (voucher MUSM 18219). A. Time-domain section containing a multi-note call (18 notes). B. Spectrogram and oscillogram of three notes (5th–7th) from the call in A. C. Time-domain section of two males in antiphonal calling (single-note calls). D. Spectrogram and oscillogram of the 4th note in C. Figures are equally scaled (ca 4.5 s on the x-axis of A and C, each marking corresponding to 1.0 s).
Fig. 4 in New acoustic and molecular data shed light on the poorly known Amazonian frog Adenomera simonstuarti (Leptodactylidae): implications for distribution and conservation
Fig. 4. Specimens of the genetic lineage 2 related to Adenomera simonstuarti (Angulo & Icochea, 2010) from the lower Juruá River, in Juruá, Brazilian state of Amazonas. A−B. Dorsolateral view of the adult male, SVL = 22.6 mm (INPA-H 39792) and the adult female, SVL = 26.1 mm (INPA-H 39814), respectively. C−D. Dorsal and ventral views of the female shown in B. Photographs by L.J.C.L. Moraes. Scale bar = 25 mm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.