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FIG. 1 in Typification of the four most investigated and valuable truffles: Tuber aestivum Vittad., T. borchii Vittad., T. magnatum Picco and T. melanosporum Vittad.
FIG. 1. — Maximum likelihood tree obtained from the alignment of ITS nuclear rDNA region sequences showing relationships among Tuber taxa and types. Sequences obtained during this study are indicated in bold. Bootstrap values ≥ 70% are indicated on the nodes of branches. The scale indicates the number of substitutions per site. Pithya vulgaris Fuckel was included as outgroup.
APPENDIX 1 in Typification of the four most investigated and valuable truffles: Tuber aestivum Vittad., T. borchii Vittad., T. magnatum Picco and T. melanosporum Vittad.
APPENDIX 1. — Surface of an ascoma of Tuber aestivum Vittad. showing transverse streaks in peridium warts.
APPENDIX 3 in Typification of the four most investigated and valuable truffles: Tuber aestivum Vittad., T. borchii Vittad., T. magnatum Picco and T. melanosporum Vittad.
APPENDIX 3. — Wulfen's description of Lycoperdon aestivum basionym of Rhizopogon aestivus (Wulfen) Fr.(1823) and Tuber aestivum (Wulfen) Spreng. (1827).
FIG. 2 in Four new species of Tephromela M.Choisy (Ascomycota, Tephromelataceae), three containing lichexanthone, from Brazil and Mexico
FIG. 2. — Phylogenetic relationship of Tephromela M.Choisy based on maximum likelihood analysis of ITS rDNA sequences.Bootstrap support values are reported below branches. The new Tephromela species are indicated in boldface. GenBank accession numbers are given in Table 1.
FIG. 1 in Four new species of Tephromela M.Choisy (Ascomycota, Tephromelataceae), three containing lichexanthone, from Brazil and Mexico
FIG. 1. — Phylogenetic relationship of Tephromela M.Choisy based on maximum likelihood analysis of ITS rDNA sequences.Bootstrap support values are reported below branches. GenBank accession numbers are given in Table 1.
APPENDIX 9 in Revision of the genus Sirodotia Kylin (Batrachospermales, Rhodophyta) with description of four new species
APPENDIX 9. — Distance tree (neighbor-joining) based on LSU sequences. * = bootstrap values>95; nodes without values indicate bootstrap values ≤ 70. Information on the sequences are listed in Appendices 1, 2. Scale represents substitutions per site.
FIG. 2 in Revision of the genus Sirodotia Kylin (Batrachospermales, Rhodophyta) with description of four new species
FIG. 2. — Neighbor Joining tree (NJ) showing the relationship of Sirodotia Kylin species based on COI-5P sequence data. * = bootstrap (bs)>95; nodes without values indicate <70 bs. Specimen code as in Appendix 1. Some sequences represent more than one collection with identical sequence, the number of additional sequences is shown in parentheses and this information is noted in Appendix 1. Scale represents substitutions per site.
APPENDIX 8 in Revision of the genus Sirodotia Kylin (Batrachospermales, Rhodophyta) with description of four new species
APPENDIX 8. — Graphical representation of the results of Automatic Barcode Gap Discovery (ABGD) for the COI-5P sequences of the Sirodotia genus used in this study. A, Histogram of the distribution of the different distance values for each species. B, the same distance data represented as ordered values.
FIG. 1 in Revision of the genus Sirodotia Kylin (Batrachospermales, Rhodophyta) with description of four new species
FIG. 1. — Phylogenetic tree (ML) showing the relationship of species within Sirodotia Kylin and genera of the Batrachospermales and Thoreales based on rbcL, COI-5P and LSU concatenated sequence data. * = bootstrap (bs)>95 and posterior probability (pp)>0.95 support; nodes without values indicate bs<70 and pp<0.80. Specimen code as in Appendix 1. Some sequences represent more than one collection with identical.
FIG. 5 in Revision of the genus Sirodotia Kylin (Batrachospermales, Rhodophyta) with description of four new species
FIG. 5. – Morphological features of Sirodotia species: A-E, Sirodotia delicatula Skuja (photos taken from sample BHO A-0984): A, obconical whorls; B, primary fascicle; C, carpogonium with a mature trichogyne (arrow) showing the basal hemispherical protuberance (arrowhead); D, fertilized carpogonium with a sessile cylindrical trichogyne, attached spermatium (arrowhead) and gonimoblast initial developing from the protuberant side of the carpogonial base (arrow); E, carposporangia (arrow) and erect gonimoblast filaments (arrowhead); F-L, Sirodotia delicatuliformis Necchi, N.L.Rossignolo & M.O.Paiano, sp. nov. (photos taken from sample SJRP 31918 – holotype): F, obconical whorls; G, primary fascicle; H, primary fascicle with spermatangia (arrow) and anomalous shape (bent end) trichogyne (arrowhead); I, carpogonium with a mature trichogyne (arrow) showing the basal hemispherical protuberance (double arrow); J, carpogonium with anomalous shape (bifurcate) trichogyne (arrow); K, carpogonium with a sessile cylindrical trichogyne (short arrow), attached spermatium (long arrow) and gonimoblast initial developing from the protuberant side of the carpogonial base (double arrow); L, carposporangia (long arrow) and erect (short arrow) gonimoblast filaments. Scale bars: A, F, 200 μm; B, C, D, E, I, 20 μm; D, K, 10 μm G, H, 50 μm; L, 25 μm. D, redrawn from Johnston et al. (2014); K, redrawn from Necchi (1991).
APPENDIX 7 in Revision of the genus Sirodotia Kylin (Batrachospermales, Rhodophyta) with description of four new species
APPENDIX 7. — Maximum likelihood phylogenetic tree based on rbcL. The numbers associated with the nodes indicate the bootstrap values (BS) for maximum likelihood and posterior probability (PP) for Bayesian analysis; nodes without values indicate BS≤70% and PP≤0.70. Sample codes as in Appendix 1.
FIG. 4 in Revision of the genus Sirodotia Kylin (Batrachospermales, Rhodophyta) with description of four new species
FIG. 4. – Morphological features of Sirodotia species. A-E, Sirodotia assamica Necchi, Rossignolo, Yasmin, J.A.West & Ganesan (photos taken from samples SJRP 32583, 32584): A, B; primary fascicles with spermatangia in clusters (arrows); C, a carpogonium with a mature trichogyne (arrow) showing the basal hemispherical protuberance (arrowhead); D, fertilized carpogonium with attached spermatium (arrow), gonimoblast initial (arrowhead) developing from the same side of the basal protuberance (arrowhead); E, carposporangia (arrow), prostrate (arrowhead) and erect (double arrowhead) gonimoblast filaments; F-J, Sirodotia cryptica Necchi, N.L.Rossignolo & M.O.Paiano, sp. nov. (photos taken from sample SJRP 32575 - holotype): F, obconical whorls; G, primary fascicle with spermatangia (arrow); H, carpogonium with a mature cylindrical trichogyne (arrow) showing the basal hemispherical protuberance (arrowhead); I, fertilized carpogonium with a sessile elongate-conical trichogyne (arrowhead), attached spermatium (arrow) and gonimoblast initial developing from the protuberant side of the carpogonial base (double arrowhead); J, carposporangia (arrows) and erect gonimoblast filaments (arrowheads). Scale bars: A, B, G, 50 μm; C, D, H-J, 20 μm; E 10 μm; F, 200 μm. B-D, reproduced with permission from Rossignolo et al. (2020) (Magnolia Press).
FIG. 6 in Revision of the genus Sirodotia Kylin (Batrachospermales, Rhodophyta) with description of four new species
FIG. 6. — Morphological features of Sirodotia species: A-E. Sirodotia huillensis (Welwitsch ex West & G.S.West) Skuja (photos taken from sample BHO A-1447): A, obconical whorls; B, C, primary fascicles with spermatangia (arrows); D, E, carpogonia with irregular trichogyne (arrowheads) showing the basal hemispherical protuberance (double arrows) and gonimoblast initial developing from the protuberant side of the carpogonium (arrow); F, carposporangia (arrows) and erect gonimoblast filaments (arrowheads). G-I, Sirodotia kennedyi (photos taken from sample BHO A-0946): G, obconical whorls; H, primary fascicles (arrows) and carpogonium with irregular trichogyne (arowhead) and basal hemispherical protuberance (double arrowhead); I, carposporangia (arrow), prostrate (arrowhead) and erect (double arrowhead) gonimoblast filaments. J-N, Sirodotia suecica Kylin (photos taken from samples BHO A-0266, SJRP32582, SJRP32583): J, obconical whorls; K, primary fascicles with terminal spermatangia (arrows); L, carpogonia with mature trichogyne (arrows) and basal hemispherical protuberance (arrowhead); M, fertilized carpogonium with attached spermatium (arrow) and gonimoblast initial (double arrowhead) on the opposite side of the basal protuberance (arrowhead); N, carposporangia (arrows), prostrate (arrowhead) and erect (double arrowhead) gonimoblast filaments. Scale bars: A, G, J, 100 μm; B-C, H-I; D-F, L-M, 10 μm; K, 50 µm. B-F, redrawn from Skuja (1931); H-I, modified from Szinte et al. (2020); M, redrawn from Necchi et al. (1993).
FIG. 3 in Revision of the genus Sirodotia Kylin (Batrachospermales, Rhodophyta) with description of four new species
FIG. 3. – Morphological features of Sirodotia species: A-E, Sirodotia amazonica Necchi, N.L.Rossignolo & M.O.Paiano, sp. nov. (all figures taken from sample SJRP 31924 - holotype): A, pear-shaped whorls; B, primary fascicle with spermatangia (arrow); C, carpogonium with a mature trichogyne (arrowhead) showing the basal hemispherical protuberance (double arrow) and attached spermatia (arrow); D, fertilized carpogonium with a cylindrical trichogyne (arrowhead), attached spermatia (arrow) and gonimoblast initial developing from the protuberant side of the carpogonial base (double arrow); E, carposporangia (arrow) and erect (arrowhead) gonimoblast filaments. F-J. Sirodotia aquiloamericana: F, pear-shaped whorls; G, primary fascicle with spermatangia (arrow); H, carpogonium with a mature trichogyne (arrow) showing the basal hemispherical protuberance (arrowhead); I, fertilized carpogonium with a cylindrical trichogyne (arrowhead), attached spermatia (arrow) and gonimoblast initial developing from the protuberant side of the carpogonial base (double arrow); J, carposporangia (arrow) and erect (arrowhead) gonimoblast filaments. K, Sirodotia assamica Necchi, N.L.Rossignolo, F.Yasmin, J.A.West & Ganesan (photo taken from sample SJRP 32583): pear-shaped whorls showing densely arranged spermatangia (arrows). Scale bars: A, F, K, 200 μm; B, G, J, 20 μm; C-E, H, I, 10 μm. H-I, redrawn from Necchi et al. (1993).
Figs 20, 21 in Taxonomic observations regarding four genera ofAfrotropical robber flies, Choerades Walker, 1851, Laphria Meigen, 1803, Nannolaphria Londt, 1977 and Notiolaphria Londt, 1977, and the description of Ericomyia gen. n. (Diptera, Asilidae, Laphriinae)
Figs 20, 21. Notiolaphria species, metathoracic legs: (20) No. dimidiatifemur (Oldroyd, 1960) ♀, (Madagascar, 7 km W Ranomafana); (21) No. rifitibia (Oldroyd, 1960) ♂, (Madagascar, Foulpointe).
Fig. 4 in Taxonomic observations regarding four genera ofAfrotropical robber flies, Choerades Walker, 1851, Laphria Meigen, 1803, Nannolaphria Londt, 1977 and Notiolaphria Londt, 1977, and the description of Ericomyia gen. n. (Diptera, Asilidae, Laphriinae)
Fig. 4. Notiolaphria coerulescens (Macquart, 1834), habitat at Bururi Forest, Burundi (Photo: R. Copeland).
Figs 34–37 in Taxonomic observations regarding four genera ofAfrotropical robber flies, Choerades Walker, 1851, Laphria Meigen, 1803, Nannolaphria Londt, 1977 and Notiolaphria Londt, 1977, and the description of Ericomyia gen. n. (Diptera, Asilidae, Laphriinae)
Figs 34–37. (34) Distribution of Nannolaphria nigra Londt, 1977 (■) and Notiolaphria coerulescens (Macquart, 1834) (●); (35–37) Distributions of Notiolaphria species in Madagascar: (35) No. dimidiatifemur (Oldroyd, 1960) (●), No. microtheres sp. n. (■), No. miltothorax sp. n. (▲); (36) No. rufitibia (Oldroyd, 1960) (●), No. stuckenbergi (Oldroyd) (▲); (37) Ericomyia atomentosa (Oldroyd, 1960) typical specimens (●) atypical specimens (▲).
Figs 16–19 in Taxonomic observations regarding four genera ofAfrotropical robber flies, Choerades Walker, 1851, Laphria Meigen, 1803, Nannolaphria Londt, 1977 and Notiolaphria Londt, 1977, and the description of Ericomyia gen. n. (Diptera, Asilidae, Laphriinae)
Figs 16–19. Notiolaphria male terminalia (note: rotated through 90°). (16, 17) No. miltothorax sp. n. (Madagascar, Ambovomany): (16) lateral and (17) ventral views. (18, 19) No. stuckenbergi (Oldroyd, 1960) (Madagascar, Zombitse National Park): (18) lateral and (19) ventral. Scale bars = 1 mm.
Figs 11–15 in Taxonomic observations regarding four genera ofAfrotropical robber flies, Choerades Walker, 1851, Laphria Meigen, 1803, Nannolaphria Londt, 1977 and Notiolaphria Londt, 1977, and the description of Ericomyia gen. n. (Diptera, Asilidae, Laphriinae)
Figs 11–15. Notiolaphria male terminalia (note: rotated through 90°). (11, 12) No. coerulescens (Macquart, 1834) (Madagascar, Lambomakakandro): (11) lateral and (12) ventral views; (13) No. dimidiatifemur (Oldroyd, 1960) (Madagascar, Zombitse Nature Reserve): lateral view; (14, 15) No. microtheres sp. n. (Madagascar, Mikea Forest): (14) lateral and (15) ventral views. Scale bars = 1 mm.
Figs 5–10 in Taxonomic observations regarding four genera ofAfrotropical robber flies, Choerades Walker, 1851, Laphria Meigen, 1803, Nannolaphria Londt, 1977 and Notiolaphria Londt, 1977, and the description of Ericomyia gen. n. (Diptera, Asilidae, Laphriinae)
Figs 5–10. Notiolaphria species, wings. (5) No. coerulescens (Macquart, 1834) (Mauritius, Roche Bois); (6) No. dimidiatifemur (Oldroyd, 1960) (Madagascar, 7km W Ranomafana National Park); (7) No. microtheres sp. n. (Madagascar, Mikea Forest); (8) No. miltothorax sp. n. (Madagascar, 7km E Beroboka, Antsarongaza forest); (9) No. rufitibia (Oldroyd, 1960) (Madagascar, Foulpointe); (10) No. stuckenbergi (Oldroyd, 1960) (Madagascar, Zombitse National Park).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.