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2,785
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Dataset results
2,785 results for “genotyping”
Characterisation of chromatin states in erythroid cells from a patient with a unique severe HbH genotype
GEO Series GSE149795. Homo sapiens. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Whole-genome definitive haplotypes of SNPs and CNVs determined by genotyping duplicated haploid genomes
GEO Series GSE54948. Homo sapiens. 97 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Global expression analysis of differential expression of genes working under Soil Water Stress condition in different genotypes of rice in Vegetative and Grain-filling stage [set 1]
GEO Series GSE49364. Oryza sativa. 12 samples. Type: Expression profiling by array.
Affymetrix SNP array data for cell line and tumor genotype alignment
GEO Series GSE85838. Homo sapiens. 15 samples. Type: Genome variation profiling by genome tiling array; Third-party reanalysis.
SNP genotyping data from human iPSCs and human fibroblast cells
GEO Series GSE61769. Homo sapiens. 4 samples. Type: Genome variation profiling by SNP array.
Genotyping in Neuroblastoma Primary tumors
GEO Series GSE19385. Homo sapiens. 648 samples. Type: Genome variation profiling by genome tiling array; Genome variation profiling by SNP array.
Next generation sequencing transcriptomic analysis of bone marrow derived macrophages within control, Cbl-/-, Cbl-b -/- and DKO genotypes
GEO Series GSE130527. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Assessing the productive and adaptive capability of two different goat breeds to heat stress based on differences in the phenotypic and genotypic traits
GEO Series GSE193343. Capra hircus. 12 samples. Type: Methylation profiling by high throughput sequencing.
Different genotypes of Trypanosoma cruzi produce distinctive placental environment genetic response in chronic experimental infection
GEO Series GSE85996. Mus musculus. 12 samples. Type: Expression profiling by array.
Molecular basis of complex heritability in natural genotype-to-phenotype relationships
GEO Series GSE123702. Saccharomyces cerevisiae. 18 samples. Type: Expression profiling by high throughput sequencing.
Genotyping of Single Nucleotide Polymorphisms (SNP) in photosynthetic genes of Sorghum bicolor
GEO Series GSE102452. Sorghum bicolor. 359 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Genotype-by-diet interactions determine susceptibility and resistance in T2D mouse models [Islet 2]
GEO Series GSE235481. Mus musculus. 45 samples. Type: Expression profiling by high throughput sequencing.
Global expression analysis of differential expression of genes working under Soil Water Stress condition in different genotypes of rice in Vegetative and Grain-filling stage [set 2]
GEO Series GSE63718. Oryza sativa. 12 samples. Type: Expression profiling by array.
Transcriptome profiles of contrasting potato (Solanum tuberosum L.) genotypes under water stress
GEO Series GSE140083. Solanum tuberosum. 24 samples. Type: Expression profiling by high throughput sequencing.
Simplified rapid differentiation of Liriomyza chinensis Kato (Diptera; Agromyzidae) genotypes A and B using PCR-RFLP.
<p>The stone leek leaf miner <em>Liriomyza chinensis</em> Kato is one of the most important pests of <em>Allium</em> spp. In recent years, a new genotype of <em>L. chinensis</em>, genotype B, has been shown to cause more severe damage to <em>Allium</em> spp. compared with the native genotype A in Japan. Thus, identification of the genotypes is important for establishing <em>L. chinensis</em> control strategies. In this study, we developed a simple and rapid method of genotype identification using PCR-restriction fragment length polymorphism (RFLP). Primers were designed to mitochondria cytochrome oxidase subunit I gene (<em>mtCOI</em>) nucleotide sequences from both genotypes. Genotype A and B were successfully identified using the restriction enzymes <em>Pvu</em>I and <em>Dde</em>I, respectively. Using PCR-RFLP, we identified the genotype of <em>L. chinensis</em> samples (n = 108) collected in seven Japanese bunching onion fields in Ibaraki Prefecture, Japan. All individuals were shown to be genotype B, as expected.</p>
Dataset of common genotypes of buckwheat_T5.1
<p>Raw data of the first season evaluation of 54 common genotypes of buckwheat evaluated at three localities - AT, CZ and SI, actual at the end of the first period.</p>
Characterization of human healthy i3 lower motor neurons exposed to CSF from ALS patients stratified by UNC13A and C9ORF72 genotype
<p>Raw data for "Characterization of human healthy i3 lower motor neurons exposed to CSF from ALS patients stratified by UNC13A and C9ORF72 genotype"</p>
Saline stress on germination and seed vigor of four chickpea genotypes available in Brazil
<p>Germination and seedling growth of <em>Cicer arietinum</em> L. CNPH01-17, CNPH02-17, BRS Allepo and BRS Cícero genotypes under salt stress conditions of 0, 40, 80, 120 and 160 mmol L<sup>-1</sup> of NaCl.</p>
Assembled mRNAs from potato genotypes contrasted for their hexanal isomerase activity
<p>From PacBio and Illumina mRNA-seq coming from leaf total RNA isolated from three <em>Solanum tuberosum</em> genotypes (Desiree, Phureja153 and S869), mRNA isoforms were assembled.</p> <ul> <li><strong>Phureja153:</strong> low (3Z):(2E) hexenal isomerase activity</li> <li><strong>Desiree:</strong> mid (3Z):(2E) hexenal isomerase activity</li> <li><strong>S869</strong>: high (3Z):(2E) hexenal isomerase activity</li> </ul> <p> </p> <p><strong>== Step1: PacBio subreads to FASTA and GTF annotation == </strong></p> <p>For each genotype, a FASTA file and a GTF annotation file are available. File is called "<a href="https://zenodo.org/api/files/e5e70d61-d4cc-4896-8eb1-b41447b8859d/pacbio_assembled_isoforms.tar.gz?versionId=a91bb81f-3442-427c-be96-190f19b4bf3c">pacbio_assembled_isoforms.tar.gz</a>".</p> <p>Pipeline used: <a href="https://github.com/SilkeAllmannLab/pacbio_snakemake/releases/tag/v0.1.0">https://github.com/SilkeAllmannLab/pacbio_snakemake/releases/tag/v0.1.0</a></p> <p>Raw PacBio data submitted to NCBI EBI ENA under accession PRJXXX.</p> <p>=== Step 2: SQANTI QC ====</p> <p><a href="https://github.com/ConesaLab/SQANTI3/wiki/Introduction-to-SQANTI3">SQANTI3</a> was run on these three PacBio assembled sets of transcript to correct them.</p> <p>The corrected transcripts and related SQANTI3 info are available in the "<a href="https://zenodo.org/api/files/e5e70d61-d4cc-4896-8eb1-b41447b8859d/sqanti_corrected_transcripts.tar.gz">sqanti_corrected_transcripts.tar.gz</a>" file.</p> <p> </p> <p> </p>
Leonia cymosa_ eleven microsatellite genotypes
<p>Genotypes of eleven SSR markers for <em>Leonia cymosa</em> an understorey tree dispersed by tamarins, and presumptly (based on flower morphology and observations in Ecuador) pollinated by stingless bees.</p> <p>Population located at Estacion Biologica Quebrada Blanco, Loreto, Peru. </p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.