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16s rRNA sequences, R code used for amplicon analysis and example code for NMGS analysis
<p>This submission contains the following data presented in: "Selection processes of Arctic seasonal glacier snowpack bacterial communities" by Keuschnig et al.</p> <p>the R code used to analyze the 16S rRNA amplicon data</p> <p>the script used for NMGS analysis</p> <p>the sequences obtained from snow samples</p>
FIGURE 51. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 in Systematics of Opsiphanes Doubleday, [1849] (Lepidoptera: Nymphalidae, Satyrinae, Brassolini): an integrative approach
FIGURE 51. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 stat. nov. Lectotype of Opsiphanes tamarindi sikyon Fruhstorfer, 1912; a. dorsal view, b. ventral view.
FIGURE 50. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 in Systematics of Opsiphanes Doubleday, [1849] (Lepidoptera: Nymphalidae, Satyrinae, Brassolini): an integrative approach
FIGURE 50. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 stat. nov. Lectotype of Opsiphanes tamarindi kleisthenes Fruhstorfer, 1912 syn. nov.; a. dorsal view, b. ventral view.
FIGURE 27. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 in Systematics of Opsiphanes Doubleday, [1849] (Lepidoptera: Nymphalidae, Satyrinae, Brassolini): an integrative approach
FIGURE 27. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 stat. nov.: Male, dorsal view: Colombia: a. (DZ 42.910-DZUP) Cali, c. (DZ 47.847-DZUP; CMBUT1328-19) Santander; Ecuador: b. (FLMNH MGCL 1103881-MGCL) Pichincha. Female, dorsal and ventral views: Mexico: d. (DZ42.843-DZUP) Oaxaca; dorsal view: Costa Rica: e. (FLMNH MGCL 1103718-MGCL) Guanacaste.
FIGURE 48. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 in Systematics of Opsiphanes Doubleday, [1849] (Lepidoptera: Nymphalidae, Satyrinae, Brassolini): an integrative approach
FIGURE 48. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 stat. nov. Lectotype of Caligo tamarindi Boisduval, 1870 preocc.; a. dorsal view, b. ventral view.
FIGURE 47. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 in Systematics of Opsiphanes Doubleday, [1849] (Lepidoptera: Nymphalidae, Satyrinae, Brassolini): an integrative approach
FIGURE 47. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 stat. nov. Lectotype of Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 stat. nov.; a. dorsal view, b. ventral view.
FIGURE 52. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 in Systematics of Opsiphanes Doubleday, [1849] (Lepidoptera: Nymphalidae, Satyrinae, Brassolini): an integrative approach
FIGURE 52. Opsiphanes cassiae tamarindi C. Felder & R. Felder, 1861 stat. nov. [Holotype] of Opsiphanes tamarindi terenzius Fruhstorfer, 1912; a. dorsal view, b. ventral view.
Supplementary material 3 from: Campana L, Cruz LR, Paresque R, Fagundes V (2022) Penile shape discriminates two cryptic species of Akodon Meyen, 1833 (Mammalia, Rodentia, Cricetidae) from eastern Brazil. ZooKeys 1134: 1-22. https://doi.org/10.3897/zookeys.1134.89587
Comparing data from A. cursor individuals from Pernambuco (ACUPE) and A. montensis from São Paulo (AMOSP)
Material from a collaborative analysis with young people. Insights into the analysis process of R&I Action #2 Youth Employment of the CoAct project
<p>The collaborative data analysis presented in this document was undertaken in the context of the research project CoAct (Co-designing Citizen Social Science for Collective Action) as part of the R&I Action #2 on Youth Employment. In this R&I Action, using Citizen Social Science as a research approach, young people aged between 15 and 21 years in employment measures in Vienna/Austria participated in collaborative social research activities. The visualisation of data analysis in the form of posters, is a selection of the collaborative analysis of qualitative expert interviews using the the “Stop and Go” (Harrasser, 2017) method. Following this method, audio recording of interviews, done by the young co-researchers themselves, are listened to and summarized as well as connected to the co-researchers’ own experience.</p> <p>The Creative Commons license and a recommendation regarding the citation of the material are provided in the document.</p> <p>For more information please contact veronika.woehrer@univie.ac.at</p>
Supplementary material 1 from: Pacifico R, Almeda F, Penneys DS, Fidanza K (2022) Systematics of the Trembleya sensu stricto clade of Microlicia (Melastomataceae, Lavoisiereae). PhytoKeys 216: 1-101. https://doi.org/10.3897/phytokeys.216.91032
List of species sampled in this study, their respective Genbank accession codes (for nrITS and nrETS), and specimen vouchers
Supplementary material 1 from: Leonhardt F, Arranz Aveces C, Müller A, Angin B, Jegu M, Haynes P, Ernst R (2022) Low genetic diversity in a widespread whistling alien: A comparison of Eleutherodactylus johnstonei Barbour, 1914 (Eleutherodactylidae) and congeners in native and introduced ranges. NeoBiota 79: 31-50. https://doi.org/10.3897/neobiota.79.86778
Detailed information on all populations of the three congeneric taxa used in the molecular data sets of this study
Estimated values of boreal caribou demographic rates (R, S, lambda) generated from SpaDES landscape simulations in the Northwest Territories
<p>Most research on boreal populations of Woodland caribou (<em>Rangifer tarandus caribou</em>) has been conducted in areas of high anthropogenic disturbance. However, a large portion of the species' range overlaps relatively pristine areas primarily disturbed by natural disturbances, such as wildfire. Climate-driven habitat change is a key concern for the conservation of boreal-dependent species, where management decisions have yet to consider knowledge from multiple ecological domains integrated into a cohesive and spatially explicit forecast of species-specific habitat and demography. We used a novel ecological forecasting framework to provide climate-sensitive projections of habitat and demography for five boreal caribou monitoring areas within the Northwest Territories (NWT), Canada, over 90 years. Importantly, we quantify uncertainty around forecasted mean values. Our results suggest habitat suitability may increase in central and southwest regions of the NWT's Taiga Plains ecozone but decrease in southern and northwestern regions driven by conversion of coniferous to deciduous forests. We do not project boreal caribou population growth rates to change despite forecasted changes to habitat suitability. Our results emphasize the importance of efforts to protect and restore northern boreal caribou habitat despite climate uncertainty while highlighting expected spatial variations that are important considerations for local people who rely on them. An ability to reproduce previous work, and critical thought when incorporating sources of uncertainty, will be important to refine forecasts, derive management decisions, and improve conservation efficacy for northern species at risk.</p>
IO2 - I am A Change Agent – What R U?
<p>The project outcome <strong>I am A Change Agent – What R U? </strong>is a video documentary co-created by the secondary school student teams. The project movie delivers highly valuable insight into the reactions of the young students that participated in the project towards this new open schooling learning method: <em>what they learned</em>, <em>how they learned</em> <em>it</em>, <em>what went well</em> and <em>what was too complicated</em>.</p>
Spectral data associated to the publication: "VIS spectroscopy of NaCl - water ice mixtures irradiated with 1 and 5 keV electrons under Europa's conditions: Formation of colour centres and Na colloids " by R. Cerubini et al. (Icarus 379, 2022)
<p>This is the complete set of experimental VIS reflectance data collected by R. Cerubini and co-authors for the article "VIS spectroscopy of NaCl - water ice mixtures irradiated with 1 and 5 keV electrons under Europa's conditions: Formation of colour centres and Na colloids" published in Icarus 379 (2022). doi: https://doi.org/10.1016/j.icarus.2022.114977.</p> <p>The article itself is published in open-access and provides the methodology for the spectral aquisitions, discussion of the errors and uncertainties, analysis of the spectra and implications for the composition of Solar System surfaces.</p> <p>The data are contained in ASCII files (columns separated by comma). The first column is the wavelength (in micrometers) and the other columns contain the reflectance data (in unit of reflectance factor). The different compositions are indicated in the filenames and correspond directly to the figures in the published paper.</p> <p> </p>
MiniCorso Tutorial - Grafici in R
<p>In questo minicorso, facente parte della collezione <a href="https://www.youtube.com/playlist?list=PLXBZ0jvtlWH6qL7SOKOddJ_7MioDid_Oo">acasaconSE</a> organizzato dalla associazione <a href="http://www.successionecologica.it/">Successione Ecologica</a>, vi parlo di come utilizzare il software R per la costruzione di grafici. </p> <p> </p>
Supplementary material 4 from: Xu C, Luo T, Zhou J-J, Wu L, Zhao X-R, Yang H-F, Xiao N, Zhou J (2023) Sinocyclocheilus longicornus (Cypriniformes, Cyprinidae), a new species of microphthalmic hypogean fish from Guizhou, Southwest China. ZooKeys 1141: 1-28. https://doi.org/10.3897/zookeys.1141.91501
Variable loadings for principal components with Eigenvalues greater than 2, from morphometric characters corrected by SL
Supplementary material 3 from: Xu C, Luo T, Zhou J-J, Wu L, Zhao X-R, Yang H-F, Xiao N, Zhou J (2023) Sinocyclocheilus longicornus (Cypriniformes, Cyprinidae), a new species of microphthalmic hypogean fish from Guizhou, Southwest China. ZooKeys 1141: 1-28. https://doi.org/10.3897/zookeys.1141.91501
Uncorrected p-distance (%) between 52 species of the genus Sinocyclocheilus based on mitochondrial ND4 sequences
Supplementary material 2 from: Xu C, Luo T, Zhou J-J, Wu L, Zhao X-R, Yang H-F, Xiao N, Zhou J (2023) Sinocyclocheilus longicornus (Cypriniformes, Cyprinidae), a new species of microphthalmic hypogean fish from Guizhou, Southwest China. ZooKeys 1141: 1-28. https://doi.org/10.3897/zookeys.1141.91501
Uncorrected p-distance (%) between 53 species of the genus Sinocyclocheilus based on mitochondrial Cyt b sequences
Supplementary material 5 from: Reshetnikov AN, Zibrova MG, Ayaz D, Bhattarai S, Borodin OV, Borzée A, Brejcha J, Çiçek K, Dimaki M, Doronin IV, Drobenkov SM, Gichikhanova UA, Gladkova AY, Gordeev DA, Ioannidis Y, Ilyukh MP, Interesova EA, Jadhav TD, Karabanov DP, Khabibullin VF, Khabilov TK, Khan MMH, Kidov AA, Klimov AS, Kochetkov DN, Kolbintsev VG, Kuzmin SL, Lotiev KY, Louppova NE, Lvov VD, Lyapkov SM, Martynenko IM, Maslova IV, Masroor R, Mazanaeva LF, Milko DA, Milto KD, Mozaffari O, Nguyen TQ, Novitsky RV, Petrovskiy AB, Prelovskiy VA, Serbin VV, Shi H-t, Skalon NV, Struijk RPJH, Taniguchi M, Tarkhnishvili D, Tsurkan VF, Tyutenkov OY, Ushakov MV, Vekhov DA, Xiao F, Yakimov AV, Yakovleva TI, Yang P, Zeleev DF, Petrosyan VG (2023) Rarely naturalized, but widespread and even invasive: the paradox of a popular pet terrapin expansion in Eurasia. NeoBiota 81: 91-127. https://doi.org/10.3897/neobiota.81.90473
Correlation matrix for ecological and other parameters of the red-eared slider Trachemys scripta elegans in water bodies of Europe (a), West Asia (b) and East Asia (c)
Supplementary material 10 from: Reshetnikov AN, Zibrova MG, Ayaz D, Bhattarai S, Borodin OV, Borzée A, Brejcha J, Çiçek K, Dimaki M, Doronin IV, Drobenkov SM, Gichikhanova UA, Gladkova AY, Gordeev DA, Ioannidis Y, Ilyukh MP, Interesova EA, Jadhav TD, Karabanov DP, Khabibullin VF, Khabilov TK, Khan MMH, Kidov AA, Klimov AS, Kochetkov DN, Kolbintsev VG, Kuzmin SL, Lotiev KY, Louppova NE, Lvov VD, Lyapkov SM, Martynenko IM, Maslova IV, Masroor R, Mazanaeva LF, Milko DA, Milto KD, Mozaffari O, Nguyen TQ, Novitsky RV, Petrovskiy AB, Prelovskiy VA, Serbin VV, Shi H-t, Skalon NV, Struijk RPJH, Taniguchi M, Tarkhnishvili D, Tsurkan VF, Tyutenkov OY, Ushakov MV, Vekhov DA, Xiao F, Yakimov AV, Yakovleva TI, Yang P, Zeleev DF, Petrosyan VG (2023) Rarely naturalized, but widespread and even invasive: the paradox of a popular pet terrapin expansion in Eurasia. NeoBiota 81: 91-127. https://doi.org/10.3897/neobiota.81.90473
Additional list of 52 persons who kindly provided their observations of red-eared sliders in open water bodies of Eurasia
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.