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3,225 results for “Case of study”
Data from: Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny.
Classically, the mitochondrial genome is sequenced by a series of amplicons using conserved PCR primers. Here we show how shot-gun transcriptome sequencing can be used to obtain the complete set of protein-coding genes from the mtDNA of four passerine bird species. With these sequences, we address the still unresolved basal Passerida relationships (Aves: Passeriformes). Our analysis suggests a new hypothesis for the basal relationships of Passerida, namely a clade grouping Sylvioidea and Passeroidea, with Paridae and Muscicapidae as successive sister groups to this clade. This study demonstrates the usefulness of next-generation sequencing transcriptome sequencing for obtaining new mtDNA genomes.
Fig. 2 in Collaborative monitoring of the ornamental trade of seahorses and pipefishes (Teleostei: Syngnathidae) in Brazil: Bahia State as a case study
Fig. 2. Hippocampus reidi. Photo (inverted): Ary Amarante.
Figure 2 from: Nader M, El Indary S, Abi Salloum B, Abou Dagher M (2011) Combining non-invasive methods for the rapid assessment of mammalian richness in a transectquadrat survey scheme – Case Study of the Horsh Ehden Nature Reserve, North Lebanon. ZooKeys 119: 63-71. https://doi.org/10.3897/zookeys.119.1040
Figure 2 - Quadrat travel route.
Figure 1 from: Nader M, El Indary S, Abi Salloum B, Abou Dagher M (2011) Combining non-invasive methods for the rapid assessment of mammalian richness in a transectquadrat survey scheme – Case Study of the Horsh Ehden Nature Reserve, North Lebanon. ZooKeys 119: 63-71. https://doi.org/10.3897/zookeys.119.1040
Figure 1 - Quadrats and gradient slopes; Blue circle indicates the forested area.
Figure 4 from: Harry I, Drees C, Hofer H, Assmann T (2011) When to sample in an inaccessible landscape: a case study with carabids from the Allgäu (northern Alps) (Coleoptera, Carabidae). ZooKeys 100: 255-271. https://doi.org/10.3897/zookeys.100.1531
Figure 4 - Sample-based rarefaction curves. Numbers refer to the different sampling periods.
Figure 1 from: Harry I, Drees C, Hofer H, Assmann T (2011) When to sample in an inaccessible landscape: a case study with carabids from the Allgäu (northern Alps) (Coleoptera, Carabidae). ZooKeys 100: 255-271. https://doi.org/10.3897/zookeys.100.1531
Figure 1 - The study area "Alpe Einödsberg". Position of some sampling sites is indicated.
Figure 1 from: Torralba-Burrial A, Merino-Sáinz I, Anadón A (2014) The relevance, biases, and importance of digitising opportunistic non-standardised collections: A case study in Iberian harvestmen fauna with BOS Arthropod Collection datasets (Arachnida, Opiliones). ZooKeys 404: 71-89. https://doi.org/10.3897/zookeys.404.6520
Figure 1 - Distribution of specimens included in this subset.
Figure 2 from: Lukhtanov VA, Novikova AV (2015) Interpretation of mitochondrial diversity in terms of taxonomy: a case study of Hyponephele lycaon species complex in Israel (Lepidoptera, Nymphalidae, Satyrinae). ZooKeys 538: 21-34. https://doi.org/10.3897/zookeys.538.6689
Figure 2 - Biotopes on Mount Hermon, Israel where COI haplogroups I (a) and II (b) were collected.
Supplementary data for the paper 'Tool assisted task on touchscreen: a case study on drawing behaviour in chimpanzees (Pan troglodytes)'
<p>Supplementary data for the paper 'Tool assisted task on touchscreen: a case study on drawing behaviour in chimpanzees (Pan troglodytes)'</p> <p>Drawing data (final drawing, spatial and temporal coordinates)</p> <p> </p> <p><strong>Abstract</strong></p> <p>Observations of drawing behaviour in chimpanzees have often focused on the completed drawings. Here, we compared drawing behaviour using fingers or tools on a touch-sensitive monitor between five chimpanzees from the Kumamoto Sanctuary (KS) and two from the Primate Research Institute (PRI), both located at Kyoto University, Japan. Regarding drawing duration, both PRI females drew relatively longer than the other, with the exception of one KS female. However, a long drawing duration did not correspond with a decrease in the number of pauses, which can be interpreted as a lack of concentration or interest. Therefore, to better understand the engagement of individuals, we recorded the time spent looking at the touchscreen. Pan, one of the two PRI females, had the longest drawing periods and spent the most time looking at the screen. We compared her with Ai, the other PRI female, to better understand their individual marking techniques and behaviours. By adapting to each one’s specific behaviour and previous experience with tool-assisted drawing on paper, we offered the females appropriate tools for making marks on the touchscreen. Our results indicate that electronic devices are not limiting in the expression of drawing behaviour. The females did not have the same drawing technique and also showed different types of engagement as motivation, which could not have been detected by only studying the completed drawings. By focusing more on the process rather than on the drawings themselves, we try to show inter-individual differences in drawing behaviour of chimpanzees and the relevance to adapt to it as experimenters.</p>
ECO3D model case study datasets
<p>Datasets for an ECO3D model case study at the huc819040507 area.</p>
Supplementary materials of the paper entitled: "Metamorphic Testing Meets Regression Testing: A Case Study of Scientific Software Maintenance"
<p>Supplementary materials of the paper entitled: “Metamorphic Testing Meets Regression Testing: A Case Study of Scientific Software Maintenance”</p> <p>file01 - source code for detecting and comparing output relations of a given metamorphic relation<br> file02 - system script for compiling SWMM, creating sSWMM simulation outputs, and logging execution time<br> file03 - source code for SWMM 5.1.014<br> file04 - source code for SWMM 5.1.015<br> file05 - a suite of 40 regression tests (40 .inp files)<br> file06 - result table for 760 cases (19 MRs × 40 .inp files)<br> file07 - 491 automatically generated follow-up .inp files via reuse<br> file08 - result table for mutation analysis<br> file09 - source code for three open-source software systems<br> File10 - code change in three open-source software systems</p>
The dataset of the manuscript "Numerical Study on the Contribution of Specific Emissions to the PM2.5 Concentration with CAMx v6.10: A Case Study of Construction Fugitive Emissions in Xi'an"
<p>The dataset of the manuscript "Numerical Study on the Contribution of Specific Emissions to the PM2.5 Concentration with CAMx v6.10: A Case Study of Construction Fugitive Emissions in Xi’an"</p>
On the importance of additional behavioral observation in behavioral psychopharmacology research: a case study on agomelatine's effects on feedback sensitivity in probabilistic reversal learning test in rats
<p>Dataset to the manuscript entitled: On the importance of additional behavioral observation in behavioral psychopharmacology research: a case study on agomelatine's effects on feedback sensitivity in probabilistic reversal learning test in rats.</p>
FIG. 1 in Detangling the effects of patch attributes on bryophyte diversity in fragmented subtropical secondary forests - a case study of land-bridge islands
FIG. 1. — Localities of 168 islands in the Thousand Island Lake, China.
Cloud-CCI+ SEVIRI CRE case study dataset
<p>A dataset of tracked DCC cores and anvils over sub-Saharan Africa (approximately 18°W-46°E, 31°S-15°N) for four months (May 2016 to August 2016). The dataset tracks the cloud properties and their cloud radiative effect over the lifetime of each DCC.</p> <p>The files contained within <em>seviri_labels_* </em>contain daily data of tracked DCCs on the SEVIRI grid with spatial masks corresponding to each detected anvil and core at each time step.</p> <p>The files contained within <em>seviri_statistics</em> contain the properties of each DCC core and anvil at each timestep along their lifetime. Each file contains all DCCs tracked within one month.</p> <p>This dataset accompanies the article <em>"A Lagrangian Perspective on the Lifecycle and Cloud Radiative Effect of Deep Convective Clouds Over Africa" </em>by William k. Jones, Martin Stengel and Philip Stier, which is to be submitted to ACP</p>
GMP Case Studies of Tolerance, Safety and Acceptability in PKU and TYR
ClinicalTrials.gov study NCT05062226. IPD Sharing: NO. Countries: 1. Publications: 0.
Uterine Activity in Moderate-Severe Neonatal Encephalopathy: A Case Control Study
ClinicalTrials.gov study NCT03122808. IPD Sharing: NO. Countries: 1. Publications: 0.
A Case Series Study of Negative Pressure Platform Wound Device
ClinicalTrials.gov study NCT04080011. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Etiology of Multiple Myeloma: A Case-Control Study
ClinicalTrials.gov study NCT00505999. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Sexuality of the Man Whose Couple is Taken Care of in Medical Assistance to Procreation. Study of Case Witnesses
ClinicalTrials.gov study NCT03459326. IPD Sharing: Not stated. Countries: 1. Publications: 0.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.