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4,144 results for “ITS barcode”
Figure 3 from: Egger C, Neusser TP, Norenburg J, Leasi F, Buge B, Vannozzi A, Cunha RL, Cox CJ, Jörger KM (2020) Uncovering the shell game with barcodes: diversity of meiofaunal Caecidae snails (Truncatelloidea, Caenogastropoda) from Central America. ZooKeys 968: 1-42. https://doi.org/10.3897/zookeys.968.52986
Figure 3 Optimal ML tree of the concatenated 28S rRNA, 16S rRNA and COI genes partitioned by genes and COI codon positions. Bootstrap values (below nodes) of the ML analysis are shown for values > 80% and posterior probability support (above nodes) of the BI analysis are shown for values > 0.95. Specimens previously classified as Meioceras are indicated in yellow color. Smooth, translucent specimens, lacking diagnostic features and summarized in the ´Caecum glabrum-like complex` are indicated in blue. C. = Caecum, M. = Meioceras, MOTU I/ MOTU II = molecular operational taxonomic unit within the ´Caecum glabrum-like complex`. Figured specimens are all to the same scale. Scale bar: 1 mm.
Fig. 7. Sample sites for barcodes for the subgenus Melanobombus von Dalla Torre, 1880 in Widespread polytypic species or complexes of local species? Revising bumblebees of the subgenus Melanobombus world-wide (Hymenoptera, Apidae, Bombus)
Fig. 7. Sample sites for barcodes for the subgenus Melanobombus von Dalla Torre, 1880, colour-coded for the order in which the samples of selected barcoded individuals were added to the analyses, from blue (2011) to red (2019) (specimens may be much older). Spherical projection with the North Pole shown as a star, international boundaries as recognized by the UN shown as grey lines. Map projected in ArcGIS using the World_Shaded_Relief basemap © 2014 ESRI.
Figure 4 from: Yu H-J, Lin X-L, Zhang R-L, Wang Q, Wang X-H (2020) Species delimitation and life stage association of Propsilocerus Kieffer, 1923 (Diptera, Chironomidae) using DNA barcodes. ZooKeys 975: 79-86. https://doi.org/10.3897/zookeys.957.54668
Figure 4 Head capsules of Propsilocerus akamusi (Tokunaga, 1938) and Propsilocerus taihuensis (Wen, Zhou & Rong, 1994) A head capsule of P. akamusi, ventral view B head capsule of P. taihuensis, ventral view C mandible of P. akamusiD mandible of P. taihuensisE antenna of P. akamusiF antenna of P. taihuensisG premento-hypopharyngeal complex of P. taihuensis. Scale bar: 100 µm (A, B), 50 µm (C, D), 25 µm (E, F).
Figure 3 from: Yu H-J, Lin X-L, Zhang R-L, Wang Q, Wang X-H (2020) Species delimitation and life stage association of Propsilocerus Kieffer, 1923 (Diptera, Chironomidae) using DNA barcodes. ZooKeys 975: 79-86. https://doi.org/10.3897/zookeys.957.54668
Figure 3 Neighbor-joining tree based on the 42 COI barcode sequences of Propsilocerus. Bootstrap support (1000 replicates) > 70% are labelled.
Figure 2 from: Yu H-J, Lin X-L, Zhang R-L, Wang Q, Wang X-H (2020) Species delimitation and life stage association of Propsilocerus Kieffer, 1923 (Diptera, Chironomidae) using DNA barcodes. ZooKeys 975: 79-86. https://doi.org/10.3897/zookeys.957.54668
Figure 2 Histogram of pairwise K2P distances of 42 aligned sequences of five Propsilocerus morphospecies. The figure was a result of analysis with ABGD using the K2P model. The horizontal axis shows the pairwise K2P-distance, and the vertical axis shows the number of pairwise sequence comparisons.
Supplementary material 2 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Agonum Bonelli, 1810 (Insecta, Coleoptera, Carabidae). Deutsche Entomologische Zeitschrift 67(2): 197-207. https://doi.org/10.3897/dez.67.56163
Neighbour-joining topology
Figure 2 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Agonum Bonelli, 1810 (Insecta, Coleoptera, Carabidae). Deutsche Entomologische Zeitschrift 67(2): 197-207. https://doi.org/10.3897/dez.67.56163
Figure 2 Maximum statistical parsimony networks of the species pairs. A.Agonum micans (Nicolai, 1822) (blue) and Agonum scitulum Dejean, 1828 (red); B.Agonum impressum (Panzer, 1796) (yellow) and Agonum sexpunctatum (Linne, 1758) (green) and C.Agonum duftschmidi Schmidt, 1994 (violet) and Agonum emarginatum (Gyllenhal, 1827) (light brown). Used parameters included default settings for connection steps, gaps were treated as fifth state. Each line represents a single mutational change, whereas small black dots indicate missing haplotypes. The numbers of analysed specimens (n) are listed, whereas the diameter of the circles is proportional to the number of haplotypes sampled (see given open circles with numbers). Scale bars: 1 mm. Beetle images were obtained from http://www.eurocarabidae.de.
Figure 3 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Agonum Bonelli, 1810 (Insecta, Coleoptera, Carabidae). Deutsche Entomologische Zeitschrift 67(2): 197-207. https://doi.org/10.3897/dez.67.56163
Figure 3 Neighbour-joining (NJ) topology of the analysed ground beetle species, based on Kimura 2-parameter distances. Triangles show the relative number of individual's sampled (height) and sequence divergence (width). Numbers next to nodes represent non-parametric bootstrap values > 75% (1,000 replicates). Beetle images were obtained from http://www.eurocarabidae.de except for Agonum monachum (Duftschmid, 1812) (Photo taken by Lars Hendrich).
Figure 1 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Agonum Bonelli, 1810 (Insecta, Coleoptera, Carabidae). Deutsche Entomologische Zeitschrift 67(2): 197-207. https://doi.org/10.3897/dez.67.56163
Figure 1 Representative images of analysed Agonum species. A.Agonum (Olisares) duftschmidi Schmidt, 1994; B.Agonum (Olisares) ericeti (Panzer, 1809); C.Agonum (Olisares) hypocrita (Apfelbeck, 1904); D.Agonum (Olisares) sexpunctatum (Linné, 1758); E.Agonum (Agonum) marginatum (Linné, 1758); F.Agonum (Agonum) muelleri (Herbst, 1784); G.Agonum (Europhilus) fuliginosum (Panzer, 1809); H.Agonum (Europhilus) piceum (Linné, 1758) and I.Agonum (Europhilus) thoreyi Dejean, 1828. Scale bars: 1 mm. All images were obtained from http://www.eurocarabidae.de.
Supplementary material 1 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Agonum Bonelli, 1810 (Insecta, Coleoptera, Carabidae). Deutsche Entomologische Zeitschrift 67(2): 197-207. https://doi.org/10.3897/dez.67.56163
Barcode analysis using the BOLD workbench
Supplementary material 1 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Pterostichus Bonelli, 1810 and allied taxa (Insecta, Coleoptera, Carabidae). ZooKeys 980: 93-117. https://doi.org/10.3897/zookeys.980.55979
Barcode analysis using the BOLD workbench
Figure 4 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Pterostichus Bonelli, 1810 and allied taxa (Insecta, Coleoptera, Carabidae). ZooKeys 980: 93-117. https://doi.org/10.3897/zookeys.980.55979
Figure 4 Subtree of the Neighbor-joining topology based on Kimura 2-parameter distances of all analyzed specimens of Pterostichus panzeri (Panzer, 1805) and nearest neighbor. Branches with specimen ID-number from BOLD, species names and sample localities. Numbers next to internal nodes are non-parametric bootstrap values (in %). Cluster (A-C) with BINs (if available) based on the barcode analysis from 11-05-2020. Beetle image was obtained from www.eurocarabidae.de.
Supplementary material 2 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Pterostichus Bonelli, 1810 and allied taxa (Insecta, Coleoptera, Carabidae). ZooKeys 980: 93-117. https://doi.org/10.3897/zookeys.980.55979
Neighbor-joining topology
Figure 3 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Pterostichus Bonelli, 1810 and allied taxa (Insecta, Coleoptera, Carabidae). ZooKeys 980: 93-117. https://doi.org/10.3897/zookeys.980.55979
Figure 3 Maximum statistical parsimony networks of the sibling species pairs APterostichus nigrita Paykull, 1790 (green) and Pterostichus rhaeticus Heer, 1837 (blue) and BPterostichus adstrictus Eschscholtz, 1823 (yellow) and Pterostichus oblongopunctatus (Fabricius, 1787) (red). Used parameters included default settings for connection steps, gaps were treated as fifth state. Each line represents a single mutational change whereas small black dots indicate missing haplotypes. The numbers of analyzed specimens (n) are listed, whereas the diameter of the circles is proportional to the number of haplotypes sampled (see given open circles with numbers). Scale bars 1 mm. Beetle images were obtained from www.eurocarabidae.de except Pterostichus adstrictus (photographer: Ditta Balke).
Figure 2 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Pterostichus Bonelli, 1810 and allied taxa (Insecta, Coleoptera, Carabidae). ZooKeys 980: 93-117. https://doi.org/10.3897/zookeys.980.55979
Figure 2 Neighbor-joining (NJ) topology of the analyzed ground beetle species based on Kimura 2-parameter distances. Triangles show the relative number of individual's sampled (height) and sequence divergence (width). Red triangles indicate species with intraspecific maximum pairwise distances > 2.2%, blue triangles species pairs with interspecific distances < 2.2%. Numbers next to nodes represent non-parametric bootstrap values > 90% (1,000 replicates). Images are provided for species recorded in Germany whereas asterisks indicate species not recorded in Germany. All beetle images were obtained from www.eurocarabidae.de except of Poecilus sericeus (photographer: Katja Neven, Lars Hendrich).
Figure 1 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Pterostichus Bonelli, 1810 and allied taxa (Insecta, Coleoptera, Carabidae). ZooKeys 980: 93-117. https://doi.org/10.3897/zookeys.980.55979
Figure 1 Representative images of analyzed beetle species AAbax parallelepipedus (Piller & Mitterbacher, 1783) BMolops piceus (Panzer, 1793) CPoecilus versicolor (Sturm, 1824) DPterostichus (Eosteropus) aethiops (Panzer, 1796) EPterostichus (Omaseus) melanarius (Illiger, 1798) FPterostichus (Oreophilus) multipunctatus (Dejean, 1828) GPterostichus (Bothriopterus) quadrifoveolatus Letzner, 1852 HPterostichus (Argutor) vernalis Panzer, 1796 and IStomis pumicatus (Panzer, 1795). Scale bars: 1 mm. All images were obtained from www.eurocarabidae.de.
Figure 5 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2020) A DNA barcode library for ground beetles of Germany: the genus Pterostichus Bonelli, 1810 and allied taxa (Insecta, Coleoptera, Carabidae). ZooKeys 980: 93-117. https://doi.org/10.3897/zookeys.980.55979
Figure 5 Subtree of the Neighbor-joining topology based on Kimura 2-parameter distances of all analyzed specimens of Molops piceus (Panzer, 1793) and nearest neighbor. Branches with specimen ID-number from BOLD, species names and sample localities. Numbers next to internal nodes are non-parametric bootstrap values (in %). Cluster (A-C) with BINs based on the barcode analysis from 11-05-2020. Beetle image was obtained from www.eurocarabidae.de.
Fig 6 in A checklist of the bats of Peninsular Malaysia and progress towards a DNA barcode reference library
Fig 6. Neighbour-joining tree showing all available DNA barcodes for species in family Vespertilionidae reported from Peninsular Malaysia. The percentage of pseudoreplicate trees (±70%) in which the DNA barcodes clustered together in the bootstrap test (500 pseudoreplicates) are shown above the branches. Abbreviation as follows: PM = Peninsular Malaysia, VN = Vietnam, BN = Borneo (including Sabah & Sarawak of East Malaysia, Brunei and Kalimantan Indonesia), TH = Thailand, LA = Laos, SM = Sumatera Indonesia, JV = Java Indonesia, CH = China, CM = Cambodia. https://doi.org/10.1371/journal.pone.0179555.g006
Fig 1 in A checklist of the bats of Peninsular Malaysia and progress towards a DNA barcode reference library
Fig 1. Bat species with recent (dated during or after the year 2000) and old (dated before year 2000) records from Peninsular Malaysia. https://doi.org/10.1371/journal.pone.0179555.g001
Supplementary material 3 from: Kodada J, Jäch MA, Freitag H, Čiamporová-Zaťovičová Z, Goffová K, Selnekovič D, Čiampor Jr F (2020) Ancyronyx lianlabangorum sp. nov., a new spider riffle beetle from Sarawak, and new distribution records for A. pulcherrimus Kodada, Jäch & Čiampor based on DNA barcodes (Coleoptera, Elmidae). ZooKeys 1003: 31-55. https://doi.org/10.3897/zookeys.1003.55541
Figure S1. Maximum Likelihood tree inferred from aligned COI mtDNA amino acids sequences.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.