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19,342 results for “Sequences”
Tuatara (Sphenodon punctatus) ab initio interspersed repeat consensus sequences from the Tuatara genome assembly.
<p>These repeat consensus sequences are part of the genome analysis of the Tuatara genome. </p>
Supplementary material 2 from: Zhao Y, Liu X-z, Bai F-y (2019) Four new species of Tremella (Tremellales, Basidiomycota) based on morphology and DNA sequence data. MycoKeys 47: 75-95. https://doi.org/10.3897/mycokeys.47.29180
Supplementary material 2 from: Zhao Y, Liu X-z, Bai F-y (2019) Four new species of Tremella (Tremellales, Basidiomycota) based on morphology and DNA sequence data. MycoKeys 47: 75-95. https://doi.org/10.3897/mycokeys.47.29180
Supplementary material 1 from: Zhao Y, Liu X-z, Bai F-y (2019) Four new species of Tremella (Tremellales, Basidiomycota) based on morphology and DNA sequence data. MycoKeys 47: 75-95. https://doi.org/10.3897/mycokeys.47.29180
Supplementary material 1 from: Zhao Y, Liu X-z, Bai F-y (2019) Four new species of Tremella (Tremellales, Basidiomycota) based on morphology and DNA sequence data. MycoKeys 47: 75-95. https://doi.org/10.3897/mycokeys.47.29180
Are there pre-main-sequence/black hole X-ray binaries?
<p>MESA inlists associated with <a href="https://ui.adsabs.harvard.edu/#abs/2018MNRAS.480.3856X/abstract">Are there pre-main-sequence/black hole X-ray binaries?</a></p>
An evaluation of pool-sequencing transcriptome-based exon capture for population genomics of non-model species.
<p>This archive is associated with the article “An evaluation of pool-sequencing transcriptome-based exon capture for population genomics of non-model species.”. Authors: Emeline Deleury, Thomas Guillemaud, Aurelie Blin & Eric Lombaert.</p> <p>The archive contains :<br> - The sequences of the 5,717 Harmonia axyridis randomly selected CDS (5717-targeted-CDS-sequences.gff3, sequence in FASTA format at the end of the file)<br> - For the subset of 3,161 targeted CDS that have a genomic match over their entire length, the positions of exons on transcripts (3161-targeted-CDS-EXON-POSITIONS.csv)</p>
FIGURE 2. Maximum Likelihood tree for Acanthephyra COI sequences with 1000 in First record of deep-sea caridean shrimp Acanthephyra fimbriata Alcock & Anderson, 1894 (Crustacea: Decapoda: Acanthephyridae) from southwest coast of India
FIGURE 2. Maximum Likelihood tree for Acanthephyra COI sequences with 1000 bootstrap showing the relationship of the specimen with other related species.
FIGURE 3. Maximum Likelihood tree for Acanthephyra 16S sequences showing with 1000 in First record of deep-sea caridean shrimp Acanthephyra fimbriata Alcock & Anderson, 1894 (Crustacea: Decapoda: Acanthephyridae) from southwest coast of India
FIGURE 3. Maximum Likelihood tree for Acanthephyra 16S sequences showing with 1000 bootstrap the relationship of the specimen with other related species.
DNA sequence influences hexasome orientation to regulate DNA accessibility
<p>Each .mat file contains selected traces from one or more videos from a single flow cell. The file name contains the concentration of Gal4 used in the experiment. There are 7 variables in the .mat files</p> <p>data - cell array where each element is an Nx2 matrix containing donor, acceptor pixel intensities for each frame.</p> <p>FRET - cell array where each element is a Nx1 matrix containing FRET values for each frame</p> <p>path - cell array where each element is a Nx1 matrix containing the idealized FRET value calculated from vbFRET</p> <p>path2D - cell array where each element is an Nx2 matrix containing idealized intensities for donor and acceptor from vbFRET (not used)</p> <p>thigh - high fret state dwell times</p> <p>tlow - low fret state dwell times. </p> <p>We also include a matlab progam, TracesView2, that can be used to scroll through the traces.</p>
Curated protostome sequences to validate deuterostome specific orthologous groups
<p>This dataset contains protostome peptide sequences that have been used to test the validity of deuterostome specific orthologous groups. BLAST was used to find potential homologous protostome sequences that could invalidate the specificity of the deuterostome orthogroups in question.</p>
FIGURE 3. Boxplots illustrating uncorrected pairwise sequence divergence. Colored boxes represent the 50 in A new species of forest-dwelling Cyrtodactylus Gray (Squamata: Gekkonidae) from the Indawgyi Wildlife Sanctuary, Kachin State, Myanmar
FIGURE 3. Boxplots illustrating uncorrected pairwise sequence divergence. Colored boxes represent the 50% quartiles. Lightblue circles represent mean values.
additional file 1 and 2 for De novo transcriptome sequencing of Serangium japonicum (Coleoptera: Coccinellidae)
<p>file1:some comman statastic results of transcriptome sequences of 6 S.japonicum samples. file2:GO classed different expression genes.</p>
FIGURES 1–3 in Stenelmis koreana Satô, 1978 (Coleoptera: Elmidae): confirmed as a wide-spread species by DNA-sequencing
FIGURES 1–3. Stenelmis koreana, Kyrgyzstan, 1) male habitus, 2) female habitus, 3) aedeagus in ventral and lateral view. Scales: 1 mm (1–2), 0.2 mm (3).
Supplementary Figure S2 Pipeline for identification of lncRNA by RNA-sequencing.
<p>Supplementary Figure S2 Pipeline for identification of lncRNA by RNA-sequencing. A total of 127,671 unique assembled transcripts were produced after mapping to the reference genome. Then, we filtered out the transcripts that possessed only a single exon, as well as shorter than 200 nt, retaining 102,134 transcripts. The transcripts that overlapped with coding gene exons in the sense orientation were filtered out using Cuffcompare software. In addition, the retaining transcripts with FPKM < 0.5 were discarded. Then, the protein coding potential of each transcript was accessed using the four most widely used tools (CPC, PFAM, phyloCSF and CNCI), of which transcripts accessed by total four tools were retained.</p>
APPENDIX. List of sequenced specimens of Triphosa, with identification, Sampling sites collecting data, Accession numbers, and process ID in BOLD database. Data taken from BOLD and generated by Axel Hausmann (1); Bernd Müller (2); Dirk Stadie (3); Iva Mihoci 4); Marco Infusino, Stefano Scalercio (5); Norbert Poell (6); Wanke et al. (7). in An integrative taxonomic revision of the genus Triphosa Stephens, 1829 (Geometridae: Larentiinae) in the Middle East and Central Asia, with description of two new species
APPENDIX. List of sequenced specimens of Triphosa, with identification, Sampling sites collecting data, Accession numbers, and process ID in BOLD database. Data taken from BOLD and generated by Axel Hausmann (1); Bernd Müller (2); Dirk Stadie (3); Iva Mihoci 4); Marco Infusino, Stefano Scalercio (5); Norbert Poell (6); Wanke et al. (7).
FIGURE 5 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 5. Charinus rocamadre (male in lot ICN-Am-159). A. Male gonopods in dorsal view, B. Detail of lobus dorsalis (LoD), C. Detail of lobus lateralis primus (LoL1) and lobus lateralis secundus (LoL2), D. Detail of subapical part of LoL1 and LoL2. LaM: Lamina medialis. Fi: Fistula. Scale bars: A=100 μm, B=20 μm, C=20 μm, D=4 μm.
FIGURE 4 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 4. Charinus rocamadre (female in lot ICN-Am-159, same specimen of figure 1). A. Female gonopods, B. Detail of gonopod, C. Detail of fluted and porous surface of the gonopod, D. Detail of flap-like soft projection, E. Detail of smooth and porous surface of the flap-like projection, F. Detail of atrium showing glandular openings. Scale bars: A=100 μm, B=20 μm, C=1 μm, D=10 μm, E=1 μm, F=5 μm.
FIGURE 2 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 2. Charinus rocamadre (female in lot ICN-Am-159, same specimen of figure 1). A. Right chelicera (inner view), B. Detail of chelicera showing internal teeth and denticles, C. Right chelicera (outer view), D. Detail of chelicerae showing denti- form relief. Scale bars: A & C=1 mm, B & D=0.5 mm.
FIGURE 6 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 6. Charinus rocamadre (male in lot ICN-Am-159, same specimen of figure 5). A. Male gonopods in ventral view, B. Male gonopods in apical view, C. Processus internus (PI), D. Detail of basal part of PI, E. Lamina medialis (LaM), F. Detail of outer surface of LaM, G. Detail of inner surface of LaM, H. Detail of lobus lateralis primus (LoL1) and lobus lateralis secundus (LoL2) in apical view. LoD: Lobus dorsalis. Fi: Fistula. GO: Genital operculum. Scale bars: A=100 μm, B=100 μm, C=20 μm, D=4 μm, E=20 μm, F=4 μm, G=2 μm, H=20 μm.
FIGURE 3 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 3. Charinus rocamadre (female in lot ICN-Am-159, same specimen of figure 1). A. Trochanter and femur in ventral view, B. Trochanter and femur in dorsal view, C. Patella, tibia, distitarsus, and claw in ventral view, D. Patella, tibia, distitarsus, and claw in dorsal view, E. Leg I, detail of the last tibial articles and first tarsal articles, F. Detail of second segment of tarsus showing the subdistal part with white ring, G. Leg IV, basitibia III and distitibia showing trichobothriotaxy. Scale bars: A–E, G=1 mm, F=0.5 mm.
FIGURE 1 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 1. Charinus rocamadre (female in lot ICN-Am-159). A. Dorsal habitus, B. Carapace, C. Anterior area of carapace, D. Sternum, and E. Detail of the sternites. Scale bars: A=2 mm, B–E=1 mm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.