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FIGURE 9. R. fargesii var. fargesii. A–E in Reinstatement of the Chinese species Rohdea yunnanensis (Asparagaceae)
FIGURE 9. R. fargesii var. fargesii. A–E. Original from China, Hubei, Shennongjia, cultivated in nursery of Zaozhang Univ. F–G. Photo by Zhang Si Yu, from Anhui, Chizhou. A. Habit; B. Infructescence; C. Fruits, longitudinal section; D & E. Seeds. F. Habit; G. Fruit, longitudinal (G) Infructescence.
FIGURE 5. R. fargesii var. fargesii. A, B & C in Reinstatement of the Chinese species Rohdea yunnanensis (Asparagaceae)
FIGURE 5. R. fargesii var. fargesii. A, B & C: Hubei, Enshi population, the filaments base part not dilated but with white films. D & E: Sichuan, Bazhong population, the filaments base part not dilated and smooth. F, G & H: Hubei, Hefeng population (Tupistra sparsiflora form): the flowers in the inflorescence are very sparse and roughness inside perianth tube. I & J: Hubei, Shengnongjia population, the filaments dilated; K & L: Shannxi, Gaolan population, the filaments dilated and perianth tube with minute coroniform appendage; M, N & O: Fujian, Wuyi Mountain population, perianth tube with lamellate internally. A, B & C by Wu Lei (CSFI). M, N & O by Meng De- Chang.
FIGURE 3. R. fargesii var. tsinlingensis. A in Reinstatement of the Chinese species Rohdea yunnanensis (Asparagaceae)
FIGURE 3. R. fargesii var. tsinlingensis. A. Habit; B, E & F. Inflorescence; C, G & H. Flower. D. Fruits. A, B & C: original from China, Shannxi, Zhouzhi and ultivated in nursery of XBGH, photos by Zhu Ren Bin (HITBC). D, E, F, G & H: photos by Du Cheng (CSH).
Supplementary material 3 from: Mohammed E, Amen R, Abdelwahab HM, Winkelmann C (2023) Potential impacts of invasive crayfish on native benthic fish: shelter use and agonistic behaviour. NeoBiota 83: 131-153. https://doi.org/10.3897/neobiota.83.102975
Correlation scatterplot of the crayfish frequency of aggressive movements, carapace length, chela length, body mass, bullhead standard length, and bullhead body mass
Supplementary material 2 from: Mohammed E, Amen R, Abdelwahab HM, Winkelmann C (2023) Potential impacts of invasive crayfish on native benthic fish: shelter use and agonistic behaviour. NeoBiota 83: 131-153. https://doi.org/10.3897/neobiota.83.102975
Scatterplot of the frequency of crayfish aggressive movements vs. carapace length, chela length, body mass, stone loach standard length, and stone loach body mass
Supplementary material 2 from: Nazari V, Lukhtanov VA, Naderi A, Fric ZF, Dincă V, Vila R (2023) More hidden diversity in a cryptic species complex: a new subspecies of Leptidea sinapis (Lepidoptera, Pieridae) from Northern Iran. Comparative Cytogenetics 17: 113-128. https://doi.org/10.3897/compcytogen.17.102830
Length of male genitalia components (phallus, saccus, vinculum) and ratios (PL/VW, SL/VW) among Leptidea specimens measured in this study
Nest shading experiment R code and data
<p>Data and R code associated with a study conducted by the University of Exeter and Ascension Island Government titled "Efficacy of artificial nest shading as a climate change adaptation measure for marine turtles at Ascension Island.</p>
Raw data and R code for: Negative effects of urbanisation on diurnal and nocturnal pollen-transport networks
<p>Pollinating insects are declining due to habitat loss and climate change, and cities with limited habitat and floral resources may be particularly vulnerable. The effects of urban landscapes on pollination networks remain poorly understood, and comparative studies of taxa with divergent niches are lacking. Here, for the first time, we simultaneously compare nocturnal moth and diurnal bee pollen-transport networks using DNA metabarcoding and ask how pollination networks are affected by increasing urbanisation. Bees and moths exhibited substantial divergence in the communities of plants they interact with. Increasing urbanisation had comparable negative effects on pollen-transport networks of both taxa, with significant declines in pollen species richness. We show that moths are an important, but overlooked, component of urban pollen-transport networks for wild flowering plants, horticultural crops, and trees. Our findings highlight the need to include both bee and non-bee taxa when assessing the status of critical plant-insect interactions in urbanised landscapes.</p>
Aula Matemática Discreta - Teoria dos Grafos no R - Unimar
<p>Arquivos utilizados na aula</p>
Custom R scripts and input files for manuscript "Evolutionary histories of breast cancer and related clones"
<p>Supporting files for manuscript <em>"Evolutionary histories of breast cancer and related clones"</em>.</p> <p>Contents:</p> <ul> <li>Custom R script and an input file (*.txt) to evaluate clonal structure of single-cell derived organoids using the Gaussian mixture models</li> <li>Custom R script and an input file (*.txt) to estimate mutation rate in normal organoids using the linear regression models </li> <li>Custom R script and input files (*.txt) to generate mutation matrices for phylogenetic analysis using MEGA and treemut </li> <li>Custom R scripts and an input file (*.txt) to estimate the timing of 1q gain, 1q gain doubling, and MRCA emergence</li> </ul>
Data and R script for: Barriers to chimpanzee gene flow at the south‐east edge of their distribution
<p><span>Populations on the edge of a species' distribution may represent an important source of adaptive diversity, yet these populations tend to be more fragmented and are more likely to be geographically isolated. Lack of genetic exchanges between such populations, due to barriers to animal movement, can not only compromise adaptive potential but also lead to the fixation of deleterious alleles. The south‐eastern edge of chimpanzee distribution is particularly fragmented, and conflicting hypotheses have been proposed about population connectivity and viability. To address this uncertainty, we generated both mitochondrial and MiSeq‐based microsatellite genotypes for 290 individuals ranging across western Tanzania. While shared mitochondrial haplotypes confirmed historical gene flow, our microsatellite analyses revealed two distinct clusters, suggesting two populations currently isolated from one another. However, we found evidence of high levels of gene flow maintained within each of these clusters, one of which covers an 18,000 km</span><sup>2</sup><span> ecosystem. Landscape genetic analyses confirmed the presence of barriers to gene flow with rivers and bare habitats highly restricting chimpanzee movement. Our study demonstrates how advances in sequencing technologies, combined with the development of landscape genetics approaches, can resolve ambiguities in the genetic history of critical populations and better inform conservation efforts of endangered species.</span></p>
FIGURES 8–11. Roederiodes spp. 8, R in Revision of New World species of Roederiodes Coquillett (Diptera: Empididae: Clinocerinae)
FIGURES 8–11. Roederiodes spp. 8, R. distinctus Chillcott, wing, scale bar = 0.5 mm; 9, R. recurvatus Chillcott, wing, scale bar = 0.5 mm; 10, R. wirthi Chillcott, head and thorax, scale bar = 0.5 mm; 11, R. recurvatus, head and thorax, scale bar = 0.25 mm. Abbreviation: dm—discal-medial cell; dc—dorsocentral setae; lbr—labrum; M—medial veins; oc s—ocellar seta; r-m—radial-medial crossvein.
FIGURE 13. Recently abandoned hayfields are prime summer habitat for Rana temporaria, R in Amphibians and reptiles in North Sweden: distribution, habitat affinities, and abundance (Classes: Amphibia and Reptilia)
FIGURE 13. Recently abandoned hayfields are prime summer habitat for Rana temporaria, R. arvalis, Bufo bufo, Anguis fragilis, and Vipera berus. The forest edge in the background is typical habitat also for Zootoca vivipara. Baggböle, Västerbotten, Middle Boreal region. Photo: Johan Elmberg.
Supplementary material 3 from: Ramírez-Bautista A, Torres-Hernández LA, Cruz-Elizalde R, Berriozabal-Islas C, Hernández-Salinas U, Wilson LD, Johnson JD, Porras LW, Balderas-Valdivia CJ, González-Hernández AJX, Mata-Silva V (2023) An updated list of the Mexican herpetofauna: with a summary of historical and contemporary studies. ZooKeys 1166: 287-306. https://doi.org/10.3897/zookeys.1166.86986
Territorial area, percentage territorial of county, and total number of species of amphibians, reptiles, and herpetofauna of each state in Mexico
Supplementary material 2 from: Wu R, Liu L, Zhang L, Jia J, Jin D, Wu X, Liu X (2023) New species of the genus Pseudocuneopsis Huang, Dai, Chen & Wu, 2022 (Bivalvia, Unionidae) from Guangxi Province, China. ZooKeys 1166: 261-270. https://doi.org/10.3897/zookeys.1166.104150
Phylogenetic tree of freshwater mussels inferred from Bayesian inference (BI) analyses based on COI barcode
Supplementary material 4 from: Monjaraz-Ruedas R, Mendez RW, Hedin M (2023) Species delimitation, biogeography, and natural history of dwarf funnel web spiders (Mygalomorphae, Hexurellidae, Hexurella) from the United States / Mexico borderlands. ZooKeys 1167: 109-157. https://doi.org/10.3897/zookeys.1167.103463
Ingroup + outgroup UCE concatenated ML tree. Specimen numbers correspond to those in Suppl. material 1.
Supplementary material 3 from: Alarcon Blazquez MG, van der Veeren R, Gacutan J, James PAS (2023) Compiling preliminary SEEA Ecosystem Accounts for the OSPAR regional sea: experimental findings and lessons learned. One Ecosystem 8: e108030. https://doi.org/10.3897/oneeco.8.e108030
Overview of information on the state, policy relevance and gaps of the OSPAR contracting parties natural capital accounts.
FIGURE 56. Meriania sessilifolia. A. Leaf blade, abaxial view. B. Flower buds. C–D. Terminal fertile branches with infructescences. A and C–D from R in A synopsis of Meriania (Melastomataceae: Merianieae) in Peru
FIGURE 56. Meriania sessilifolia. A. Leaf blade, abaxial view. B. Flower buds. C–D. Terminal fertile branches with infructescences. A and C–D from R. Fernandez-Hilario et al. 2097; B from R. Fernandez-Hilario et al. 2424. Photos by Robin Fernandez-Hilario.
FIGURE 15. Meriania bongarana. A. Leaf blade, abaxial view. B. Inflorescence with flower buds. C. Flower. D. Fruits. A from R in A synopsis of Meriania (Melastomataceae: Merianieae) in Peru
FIGURE 15. Meriania bongarana. A. Leaf blade, abaxial view. B. Inflorescence with flower buds. C. Flower. D. Fruits. A from R. Fernandez-Hilario et al. 2352; B and D from R. Fernandez-Hilario et al. 1930; C from I. Revilla et al. 3211. Photos by Robin Fernandez (A, B and D) and Akira Wong (C).
Context-dependent evolution of high trophic position drives functional disparity in subterranean crustaceans: data and R code
<p>The dataset contains morphological data, phylogenetic tree, and R code used in the analyses presented in the paper titled "Context-dependent evolution of high trophic position drives functional disparity in subterranean crustaceans". </p> <p>Niphargus_morpho_data.xlsx: morphological data for import in R<br> Niphargus_tree.nex: consensus phylogenetic tree for import in R<br> Rcode.Rmd: the R script in R markdown format to reproduce the analyses<br> Rcode.html: the R script in html format <br> Reproducibility_report.doc: Functional diversity protocol checklist created with stepFD (https://facuxpalacio.shinyapps.io/stepFD/)</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.