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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Dynamic CTCF occupancy during differentiation rewires cis-regulatory module interactions essential for development
GEO Series GSE131055. Homo sapiens. 43 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
SATB1 Regulates 3D Genome Architecture in T cells by Constraining Chromatin Interactions surrounding CTCF-binding sites
GEO Series GSE199006. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention [ChIP-seq & RNA-seq]
GEO Series GSE137216. Mus musculus; Homo sapiens. 152 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types [HiChIP]
GEO Series GSE100856. Homo sapiens. 4 samples. Type: Other.
CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8+ T cells [ChIP-Seq]
GEO Series GSE205077. Mus musculus. 34 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF mutation at R567 affects mouse heart development via 3D genome rearrangement and transcription dysregulation [RNA-seq]
GEO Series GSE262508. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Germline Variant in Ctcf Links Mental Retardation to Wilms Tumor Predisposition
GEO Series GSE193233. Homo sapiens. 2 samples. Type: Genome variation profiling by high throughput sequencing.
DNA G-quadruplexes contribute to CTCF and cohesin recruitment
GEO Series GSE173074. Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Combined CRISPR and proteomics screening reveal a cohesin-CTCF-bound allele contributing to increased expression of RUVBL1 and prostate cancer progression [RNA]
GEO Series GSE224646. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Cohesin and CTCF control chromosomal contact dynamics in living cells [capture C]
GEO Series GSE197234. Mus musculus. 4 samples. Type: Other.
Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl
GEO Series GSE76303. Mus musculus. 103 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
DNA Methylation Regulates Alternative Polyadenylation via CTCF and the Cohesin Complex
GEO Series GSE86178. Homo sapiens. 8 samples. Type: Other; Non-coding RNA profiling by high throughput sequencing.
De novo mutations in the genome organizer CTCF cause Intellectual Disability (ChIP-Seq)
GEO Series GSE46832. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cohesin and CTCF control chromosomal contact dynamics in living cells [integration sites]
GEO Series GSE197237. Mus musculus. 4 samples. Type: Other.
LATS kinase-mediated selective disruption of CTCF genomic binding
GEO Series GSE114319. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types [DROP-seq]
GEO Series GSE102090. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [RNA-seq]
GEO Series GSE123641. Mus musculus. 56 samples. Type: Expression profiling by high throughput sequencing.
HoxBlinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia
GEO Series GSE269258. Mus musculus; Homo sapiens. 61 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF
GEO Series GSE271837. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [ChIP-seq]
GEO Series GSE123651. Mus musculus. 59 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.