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2,394 results for “Containers”
Mass spectrometry imaging of metabolites in symbiont containing tissues of Bathymodiolus sp. mussels from a hydrothermal vent
<p>Molecules in <em>Bathymodiolus </em>sp. tissue. Distribution of five lipid metabolites in symbiont containing gill tissues was visualized using MALDI mass spectrometry imaging (red: high amounts, blue: low amounts of lipids).</p>
Imaging of metabolites in symbiont containing tissues of Bathymodiolus sp. mussels from a hydrothermal vent
<p>MALDI-MS laser spot size directly influences the resolution of ion-maps generated by MALDI-MS imaging. Here we show from top to bottom different ion maps from <em>Bathymodiolus sp</em>. tissue acquired with decreasing spot sizes (laser spot diameter indicated in each image). Details relevant to the scale of the bacterial symbionts become visible by using laser settings under 10 µm spot size.</p>
Figure 2. - Nesting architecture of Xylocopanasalis; Dissected nests of Xylocopanasalis revealing the nest structure inside the bamboo culm and its residents. Measurements of the nest parameters are shown in Table 1. The diameters of the nests (excluding the nest thickness) were measured at the nest entrance, followed by the vestibulum (antechamber) length, cell length, and the inner most cell length, respectively (2a). Cells containing larvae with pollen masses and their feces were collected and weighted (2b).
Figure 2. - Nesting architecture of Xylocopanasalis; Dissected nests of Xylocopanasalis revealing the nest structure inside the bamboo culm and its residents. Measurements of the nest parameters are shown in Table 1. The diameters of the nests (excluding the nest thickness) were measured at the nest entrance, followed by the vestibulum (antechamber) length, cell length, and the inner most cell length, respectively (2a). Cells containing larvae with pollen masses and their feces were collected and weighted (2b).
Dataset containing raw simulation data for a paper on decoding bosonic quantum LDPC codes
<p>This is the dataset from evaluations used in code related to a paper on analog information decoding of bosonic quantum LDPC codes, available on Github (https://github.com/cda-tum/mqt-qecc/). For more information we refer to the Github repository and the paper.</p>
Containment in International Relations 52 Scopus data
<p>The data contains 52 documents from the Scopus database. The data contains the topic of containment in the context of international relations.</p>
mRatBN7.2 chromosomal regions containing misassembled segments
<p>This file contains regions of the mRatBN7.2 that contain misassembled segments. The code for generating these results are available in github:</p> <p>https://github.com/hanyoupan/rat-manuscript/tree/main/5_IdentifyingMisAssembledSegments</p>
1973_9 Clay container
Student work. Information is missing. Created in RealityCapture by Capturing Reality from 288 images in 00h:34m:58s. Source: Objaverse 1.0 / Sketchfab
Neolithic Storage Container from Abu Hureyra
This is a 3D model of a storage container from Tell Abu Hureyra in Syria. The original artifact is displayed at the Ashmoleon Museum in Oxford. Dating: Pre-Pottery Neolithic B Source: Objaverse 1.0 / Sketchfab
Tea container
ID no.: ZKWawel 5169 Museum: Wawel Royal Castle – State Art Collection http://muzea.malopolska.pl/en/obiekty/-/a/4869610/4877439 Digitalisation: RDW MIC, Małopolska's Virtual Museums Plus project Source: Objaverse 1.0 / Sketchfab
Project Database and Environmental and Circularity Database containing information on Basajaun Façade System Modules
<p><strong><span>1. INTRODUCTION</span></strong></p> <p><strong><span>The Basajaun project aims to build a sustainable joint between rural and urban areas through circular and innovative wood construction value chains. Building façade was one of the innovations developed in Basajaun, which were implemented in digital and real scale demo buildings. The main innovation for the façade includes the implementation of </span></strong><span> <strong>hybrid bio-based polymers and wood over three technological systems that incorporate increased use of wood-based components and a novel bio-composite material: the frame profiles, the insulation equipment, and the seal system.</strong> <strong>This implies the need to verify the reduction of environmental impact, including the calculation of its Embodied Carbon.</strong> </span></p> <p><strong><span><br>2. REPOSITORY</span></strong> </p> <p><strong><span>The Project Database and Environmental and Circularity Database presented here serve as repositories of the specific information related to the Basajaun Façade System's life cycles (A1-A5) employed to assess its cradle-to-practical-completion Embodied Carbon. It can also be used to validate the digital Semantic Framework conceived for the facilitation of Façade Environmental Assessment beneath the project.<br>The Project Database contains datasets with technical information on each façade module analysed. This should be regarded as a complete database for the Basajaun commission job, including (1, 2, and 3) the list of materials, components, and processes related to three different modules (Glazed Vision, Opaque, and Window modules); (4) the façade modules assembly off-site; (5) Information on transporting modules to the construction site; and (6) the construction activities related to Opaque and Window modules.<br>The Environmental and Circularity Database is designed to be unique to the production plant and contains the four datasets. The first dataset (1) provides information on the environmental impact of each possible single material, component, or process related to the façade module's life cycle (e.g., carbon factors). Assembly off-site (2) and logistics (3) consumption and emissions data are stored separately in two different datasets. Finally, the dataset related to construction site options (4) contains data on all working activities related to the façade modules.</span></strong><span> </span></p> <p><strong><span><br>3. INSTALLATION</span></strong></p> <p><strong><span>All datasets are in .csv format with data separated by a ";".</span></strong><span> <strong><br>Private data belonging to third parties or under copyright, which cannot be published, have been replaced with "omitted".</strong></span></p>
Dataset of paper "Evaluation Of Microplastics Release From Solar Water Disinfection Poly(Ethylene Terephthalate) And Polypropylene Containers"
<p>Dataset of paper "Evaluation Of Microplastics Release From Solar Water Disinfection Poly(Ethylene Terephthalate) And Polypropylene Containers":</p><ul><li>Effect of the underlying glass fiber (GF) filter on the baseline of an HDPE MP microreflectance spectrum.</li><li>Comparison between the spectrum of a particle collected from the treated water and the spectrum of pristine high-density polyethylene polymer.</li><li>Number of total microplastics (high-density polyethylene and polypropylene) found in PET bottles.</li><li>Number of total microplastics (high-density polyethylene and polypropylene) found in TJC containers.</li><li>Comparison between the spectrum of PP particles recovered after 10 weeks of exposure time.</li><li>Number of microplastics identified as polypropylene and weathered polypropylene in the samples corresponding to the translucent jerrycans containers.</li><li>Number of microplastics identified as polypropylene and weathered polypropylene in the samples corresponding to the transparent jerrycans containers.</li><li>Number of polypropylene microplastics found in the translucent and transparent jerrycans containers.</li><li>Number of microplastics found in PET bottles and TJC containers.</li><li>Size of the microplastics found in the study. </li><li>Abundance of each target polymer found in the study based on the measured minor particle dimension.</li></ul>
STORM Data: Transcriptionally active chromatin loops contain both 'active' and 'inactive' histone modifications that exhibit exclusivity at the level of nucleosome clusters
<p>The dataset underlying the SMLM STORM super-resolution images of 'Transcriptionally active chromatin loops contain both ‘active’ and ‘inactive’ histone modifications that exhibit exclusivity at the level of nucleosome clusters'. See Biorxiv paper for details on sample preparation: <a href="https://www.biorxiv.org/content/10.1101/2023.09.03.555774v1.full.pdf">https://www.biorxiv.org/content/10.1101/2023.09.03.555774v1.full.pdf</a>, Pyranose Oxidase STORM buffer on Elyra 7 Zeiss Microscope, processed with Zen Black. Samples are named according to which figures they occur in the above paper.</p>
Supporting data for "Electrochemical Removal of HF from Carbonate-based LiPF6-containing Li-ion Battery Electrolytes"
<p>This is the dataset of electrochemical experiments and BET analysis for our publication "Electrochemical Removal of HF from Carbonate-based LiPF6-containing Li-ion Battery Electrolytes" (DOI: <span><a href="https://doi.org/10.1149/1945-7111/ad30d3"><span>https://doi.org/10.1149/1945-7111/ad30d3</span></a></span>). This archive contains the raw data and Python Jupyter Notebook computer code to process, analyze, and generate the plots in this manuscript and its Supporting Information.</p> <p> </p> <p><span>Abstract for the manuscript:</span></p> <p> </p> <p><span>Due to the hydrolytic instability of LiPF6 in carbonate-based solvents, HF is a typical impurity in Li-ion battery electrolytes. HF significantly influences the performance of Li-ion batteries, for example by impacting the formation of the solid electrolyte interphase at the anode and by affecting transition metal dissolution at the cathode. Additionally, HF complicates studying fundamental interfacial electrochemistry of Li-ion battery electrolytes, such as direct anion reduction, because it is electrocatalytically relatively unstable, resulting in a LiF passivation layer. Methods to selectively remove ppm levels of HF from LiPF6-containing carbonate-based electrolytes are limited. We introduce and benchmark a simple yet efficient electrochemical method to selectively remove ppm amounts of HF from LiPF6-containing carbonate-based electrolytes. The basic idea is the application of a suitable potential to a high surface-area metallic electrode upon which only HF reacts (electrocatalytically) while all other electrolyte components are unaffected under the respective conditions.</span></p> <p> </p>
Wear topography measurements: selected polymers after friction tests with steel – lubrication with ionic liquids containing CNTs
<p>Measurement files of the topography of worn surfaces of polymers cooperating with steel and lubricated with hybrids of ionic liquids and carbon nanotubes. The files correspond to the tests presented in:</p> <p><span>Tribological tests - block-on-ring - polymers vs. AISI 4130 - IL+CNTs, IL+Cu_CNTs https://doi.org/10.5281/zenodo.10817199. </span></p>
Data from: Preparation of isolated guard cells, containing cell walls, from Vicia faba
<p>Stomatal movement, initiated by specialized epidermal cells known as guard cells (GCs), plays a pivotal role in plant gas exchange and water use efficiency. Despite protocols existing for isolating GCs through proplasting for carrying out biochemical, physiological, and molecular studies, protocols for isolating GCs with their cell walls still intact have been lacking in the literature. In this paper, we introduce a method for the isolation of complete GCs from <em>Vicia faba </em>and show their membrane to remain impermeable through propidium iodide staining. This methodology enables further in-depth analyses into the cell wall composition of GCs, facilitating our understanding of structure-function relationship governing reversible actuation within cells.</p>
Peripheral priming induces plastic transcriptomic and proteomic responses in circulating neutrophils required for pathogen containment
<p><strong>When using any of this data, please cite the corresponding manuscript</strong></p> <div> <div> <p><a title="Rainer Kaiser et al., Peripheral priming induces plastic transcriptomic and proteomic responses in circulating neutrophils required for pathogen containment.Sci. Adv.10,eadl1710(2024).DOI:10.1126/sciadv.adl1710" href="https://doi.org/10.1126/sciadv.adl1710">Rainer Kaiser et al., Peripheral priming induces plastic transcriptomic and proteomic responses in circulating neutrophils required for pathogen containment. Sci. Adv. 10, eadl1710 (2024). DOI:10.1126/sciadv.adl1710</a></p> </div> </div> <p><strong>Original Data</strong></p> <p>The following files contain all count data for the original data of this manuscript:</p> <p>sepsis1_raw_feature_bc_matrix.h5 -> raw feature barcode matrix for sepsis1 sequencing<br>sepsis1_velocyto.loom -> velocyto matrices for sepsis1<br>sepsis2_raw_feature_bc_matrix.h5 -> raw feature barcode matrix for sepsis2 sequencing<br>sepsis2_velocyto.loom -> velocyto matrices for sepsis2</p> <p>sepsis_seurat.rds -> processed Seurat object containing original data cells. (Upd.: the meta.data-column "cellnames" contains the cell type annotation given in Figure 1B)</p> <p><strong>Original Data Scripts</strong></p> <p>process.R -> main analysis script<br>functions.R -> helper functions for main analysis script<br>enrichmentAnalysis.R -> script running the enrichment analysis<br>process_wgcna.R -> script performing the wgcna analysis<br>velocities_step1.R -> script performing velocity analysis (from seurat to data matrices)<br>velocities_step2.py -> actual velocity analysis<br><br><strong>GSE137539 Re-Analysis</strong></p> <p>gse137539_processed.Rds -> processed seurat object<br>gse137539_process.R -> analysis script</p> <p><strong>Bulk Analysis</strong></p> <p>MOUSE_SEPTIC_SEPTICACT.inex.DirectDESeq2.xlsx-> Raw UMI counts (intronic+exonic from zUMIs) and DE genes<br>MOUSE_SEPTIC_SEPTICACT.inex.DirectDESeq2.tsv.GeneOntology.BP.up.gsea.tsv -> Gene Set Enrichment Analysis on up-regulated genes using Gene Ontology Biological Process</p>
Dataset for Modeling scattering matrix containing evanescent modes for wavefront shaping applications in disordered media
<h3>About the data set</h3> <p>The zipped folder contains the saved computational run data of the Matlab code packages associated with our manuscript titled "Modeling scattering matrix containing evanescent modes for wavefront shaping applications in disordered media". Two .mat data files "saved-data-Code-Package-1.mat" and "saved-data-Code-Package-2.mat" are available within the zipped folder which are associated with the Matlab code packages hosted in the <a href="https://github.com/michaelraju/Generalized-S-Matrix.git" target="_blank" rel="noopener">Github repository</a> . One may add the data files "saved-data-Code-Package-1.mat" and "saved-data-Code-Package-2.mat" to the <a href="https://github.com/michaelraju/Generalized-S-Matrix.git" target="_blank" rel="noopener">Github repository</a> code package folders "Code-Package-1" and "Code-Package-2" respectively. Loading the saved run data (by setting <em>new_run_flag=0</em> in the main.m file contained in the Github repository) helps to visualize the results presented in the paper, without actually performing a new computational run from scratch. On the other hand, setting the flag <em>new_run_flag=1</em> yields a fresh computational run, initializing a new disorder.</p> <div> <h3>Contribution</h3> </div> <p>The dataset, the associated code packages and the analytical and numerical formulations were developed by Michael Raju as part of his <a href="https://hdl.handle.net/10468/14107" target="_blank" rel="noopener">PhD thesis</a>. Baptiste Jayet and Prof. Stefan Andersson-Engels were involved in the PhD supervision. </p>
Refractive index tomography of chitin-containing bristles (chaetae) from Platynereis dumerilii
<p>This dataset is a supplementary material including refractive index tomograms of an article </p> <p>Ikeda, K., Belevich, I., Zelaya-Lainez, L., Orel, L., Füssl, J., Gumulec, J., Hellmich, C., Jokitalo, E., Raible, F.: Dynamic microvilli sculpt bristles at nanometric scale. Nature Communications 2024.</p> <p><strong>Biochemical isolation of bristles and imaging</strong></p> <p>Larvae were washed twice using artificial sea water. The larvae were washed in artificial seawater supplemented with 25mM EGTA, then lysed for 1 hour in Triton X-100 1% in the same buffer on ice. We could observe the appearance of a gel containing bristles. The gel was washed twice in 10 mM Tris-HCl, 2.5 mM MgCl2, 0.5 mM, CaCl2pH 7.6. 50 μL were left inthe sample at the last wash and the gel was digested with 5 U of DNase I (Thermo Fischer Scientific) for 2.5 hours at 37°C with 360 rpm agitation. Next,the digest was supplemented with 100 μL of artificial sea water and digested with 200 μL of 2.5 μg/μL Liberase Enzyme Blend (Sigma-Aldrich) for 1 hour at 50°C. The bristles were washed 3 times in artificial seawater. The isolated bristles were mounted onμ Slide I Luer (Ibidi). The refractive index tomograms of isolated bristles were obtained by Nanolive 3D Cell Explorer with 60X magnification.</p> <p>The accompanied TIFF is 32-bit, where pixel values correspond to refractive index (e.g. pixel value in image 1.335 = refractive index <em>n</em>). The pixel size is 0.182um, the Z step is 0.372 um.</p>
Boulez_dataset_PoD: Dataset containing results from the research project Points of Discontinuity concerning Pierre Boulez, Le Marteau sans Maître pour voix d'alto et 6 instruments (1953–57), no. 7: après "l'artisanat furieux". Rapide
<p>The complete datasets resulting from the research project <em>Points of Discontinuity</em> contain 23 datasets for the musical works or excerpts that were part of the online listening experiment, with each dataset containing seven or eight files (all audio files are stored in a dataset with restricted access), as well as a dataset (PoD_general_dataset) with five additional files.</p> <p>This dataset<strong> Boulez_dataset_PoD </strong>contains eight files:</p> <ul> <li>Boulez_01_ReadMe.pdf</li> <li>Boulez_02_data.xlsx (processed data for this work)</li> <li>Boulez_03_individual_data.xlsx (raw data for each participant obtained from the experiment)</li> <li>Boulez_04_audio.mp3 <strong>[non-public] </strong>(audio recording used in the experiment) [stored in the restricted dataset <a href="https://doi.org/10.5281/zenodo.13981214" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.13981214</a>]</li> <li>Boulez_05_model_results.sv (graphical representation of results and the model in Sonic Visualiser) [requires audio file Berg_04_audio.mp3 to display correctly]</li> <li>Boulez_06_SV-data_model+results.zip (text files with the marker locations for all layers in Sonic Visualiser)</li> <li>Boulez_07_model+results_SV-screenshot.pdf (a screenshot of the full-screen display of the SV-file)</li> <li>Boulez_08_annotated_score.pdf (model analysis annotated in the score)</li> </ul>
Cyber4OT: ICS network traces containing normal activity and full attack traffic
<p>The <em><strong>Cyber4OT</strong></em> dataset contains prepared in the test-bed environment packet traces from normal activity of OT network, as well as, full network attack. During recorded activity, the attacker performs full network reconnaissance, later disconnects legal Modbus TCP connection and performs PLC device hijacking.</p> <p>The dataset contains 96 files with more than 4,25 millions of packets.</p> <p><em><strong>ReadMe.txt</strong></em> file contains short description of each trace file content.</p> <p>Detailed description of the test bed, where data was prepared, is provided in the <em><strong>Cyber4OT_testbed_description.pdf</strong></em> file.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.