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Dataset results
309 results for “Plant roots”
Data from: Getting to the root of organic inputs in groundwaters: stygofaunal plant consumption in a calcrete aquifer
<p>Groundwater environments interact with and support subterranean biota as well as superficial aquatic and terrestrial ecosystems. However, knowledge of subterranean energy flows remains incomplete. Cross-boundary investigations are needed to better understand the trophic structures of groundwater ecosystems and their reliance on carbon inputs from aboveground. In this study we used carbon and nitrogen stable isotope analyses combined with radiocarbon fingerprints to characterise organic flows in groundwater ecosystems. We coupled these data with DNA metabarcoding of the gut contents of consumers to further elucidate organic matter sources and shifts in diet preferences. Samples were collected from the arid zone Sturt Meadows calcrete aquifer under low rainfall (LR) and high rainfall (HR) conditions. Bayesian modelling of Δ<sup>14</sup>C, δ<sup>13</sup>C and δ<sup>15</sup>N data indicated that primary consumers (copepods) incorporated mainly particulate organic carbon (POC) under LR but during HR shifted to root derived material (either exudates or direct root grazing). By contrast, diets of secondary consumers (amphipods) were dominated by root material under both LR and HR. Our DNA metabarcoding-based results indicate that amphipods relied primarily on root inputs from perennial trees (likely <i>Eucalyptus</i> and <i>Callitris</i>) during the dry season (LR). Under HR, diets of both amphipods and copepods also included organic material derived from a broad range of more shallow rooted shrubs, and ephemeral herbs and grasses. Our findings illustrate the complexity of functional linkages between groundwater biota and terrestrial surficial ecosystems in environments where aboveground productivity, diversity and organic matter flux to groundwater are intimately linked to often episodic rainfall.</p>
Plant–soil interactions in a deglaciated landscape: Roots reflect environmental severity
<p>Supported data set of basic soil properties and Arctic willow roots and leaves elements and substances composition for the article "Plant–soil interactions in a deglaciated landscape: Roots reflect environmental severity" submitted to Scandinavian Journal of Forest Research.</p>
The polyadenylation factor FIP1 is important for plant development and root responses to abiotic stresses
GEO Series GSE127972. Arabidopsis thaliana. 4 samples. Type: Expression profiling by high throughput sequencing.
Data from: Getting to the root of organic inputs in groundwaters: stygofaunal plant consumption in a calcrete aquifer
Open the record for dataset details and reuse information.
RNA-Seq of 40 single cells from the Arabidopsis root FACS sorted GFP positive cells from WOX5:GFP expressing plants
GEO Series GSE64381. Arabidopsis thaliana. 40 samples. Type: Expression profiling by high throughput sequencing.
Coordination between the microbiota and the root diffusion barriers is required for plant mineral nutrient homeostasis
GEO Series GSE151376. Arabidopsis thaliana. 80 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome profile for roots of the rice plants which showed favorable morpho-physiological adaptation when subjected to severe drought stress
GEO Series GSE78504. Oryza sativa. 23 samples. Type: Expression profiling by array.
ATAC-seq profiling of open chromatin in the root tips of four plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) and two Arabidopsis thaliana cell types
GEO Series GSE101482. Medicago truncatula; Arabidopsis thaliana; Solanum lycopersicum; Oryza sativa. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Expression data roots of Arabidopsis plants inoculated with Verticillium longisporum
GEO Series GSE62537. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array.
Expression data from Arabidopsis plants overexpressing CLE2 in roots
GEO Series GSE149015. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array.
Expression data from roots of WT and bts-3 plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours
GEO Series GSE71875. Arabidopsis thaliana. 10 samples. Type: Expression profiling by array.
Comparison of root transcriptomes in Arabidopsis thaliana plants supplied with different forms of inorganic nitrogen
GEO Series GSE29589. Arabidopsis thaliana. 15 samples. Type: Expression profiling by array.
Expression data from roots of WT and fit plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours
GEO Series GSE139433. Arabidopsis thaliana. 8 samples. Type: Expression profiling by array.
Gene expression patterns in roots of Camelina sativa with enhanced salinity tolerance arising from growth in soil treated with plant growth promoting bacteria producing ACC deaminase or from expressio
GEO Series GSE103720. Camelina sativa. 12 samples. Type: Expression profiling by high throughput sequencing.
TIME-COURSE GENE EXPRESSION OF Metharizium anisopliae GROWING IN PLANT ROOT EXUDATE
GEO Series GSE16848. Metarhizium anisopliae. 10 samples. Type: Expression profiling by array.
Root nitrate response of Ws plants and afb3-1 mutant plants
GEO Series GSE35544. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array.
transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
GEO Series GSE11558. Arabidopsis thaliana. 28 samples. Type: Expression profiling by array.
Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both plant and nema
GEO Series GSE88763. Meloidogyne incognita; Solanum lycopersicum. 34 samples. Type: Expression profiling by high throughput sequencing.
Overexpression of OsbHLH044 transcription factor controls a negative regulatory module associated with plant cell death and stress inhibition in rice crown root development
GEO Series GSE147200. Oryza sativa; Oryza sativa Japonica Group. 12 samples. Type: Expression profiling by array.
Diversification of Root Hair Development Genes in Vascular Plants
GEO Series GSE85516. Oryza sativa; Cucumis sativus; Glycine max; Arabidopsis thaliana; Solanum lycopersicum; Zea mays. 30 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.