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380 results for “Pressure Data”
Depressurization of CO2 in a pipe: High-resolution pressure and temperature data and comparison with model predictions – dataset
<p>This dataset contains data from depressurization of pure CO<sub>2</sub> and nitrogen in a tube from a gaseous and a dense-liquid state. The data are described in the accompanying paper (DOI: <a href="https://doi.org/10.1016/j.energy.2020.118560">10.1016/j.energy.2020.118560</a>).</p> <p>Test number; fluid; pressure (MPa); temperature (deg C):<br> 3; CO2; 4.04; 10.2<br> 4; CO2; 12.54; 21.1<br> 6; CO2; 10.40; 40.0<br> 8; CO2; 12.22; 24.6<br> 11; N2; 5.13; 10.0</p> <p><br> </p>
Diffraction data for CCDC 2031535–2031545 and 2031863–2031890. Claudetite I at various temperatures and pressures
<p>Diffraction data for claudetite I, monoclinic arsenic(III) oxide polymorph collected at room and low temperature (single-crystal diffraction data corresponding to CCDC 2031535-20311545) and at high pressure (powder diffraction data corresponding to CCDC 2031863–2031890).</p>
Data from: Does parasitoid pressure elicit defensive polyphenism in the green peach aphid?
<p>Aphids are capable of adapting to parasitoid pressure in the absence of sexual reproduction using epigenetically controlled polyphenism. Asexual lineages of aphids could thus become resistant to parasitoids over time and with repeated exposure, hampering biocontrol efforts that rely on parasitoid wasps. Prior to this study, wing polyphenism and reproductive polyphenism had been reported as parasitoid-adaptive responses in asexual lineages of at least two species of aphids, but it remained unclear whether parasitoid exposure could induce other defensive polyphenisms. Using a rigorous, replicated experimental evolution design, we aimed to induce adaptive polyphenisms in the green peach aphid, <i>Myzus persicae </i>Sulzer, through serial exposures of single asexual lines to the parasitoid <i>Aphidius colemani </i>Viereck over four consecutive generations. We attempted to measure changes in parasitoid susceptibility, reproductive schedule, body size, and production of pink or alate offspring compared to aphid control lines not exposed to parasitoids. Despite this consistently strong selective parasitoid pressure, there was no evidence that asexual lineages of <i>M. persicae </i>adapt to parasitoid pressure using adaptive polyphenism. Our data indicate that pseudo-crowding stress – where aphids disturbed by parasitoids or predators wander within a colony, increasing aphid-to-aphid contact and creating the illusion of a more crowded environment – may be necessary for <i>M. persicae </i>to produce defensive polyphenisms in response to parasitoid attack.</p>
Data from: Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution
Background. The Marburg virus (MARV) has a negative-sense single-stranded RNA genome, belongs to the family Filoviridae, and is responsible for several outbreaks of highly fatal hemorrhagic fever. Codon usage patterns of viruses reflect a series of evolutionary changes that enable viruses to shape their survival rates and fitness toward the external environment and, most importantly, their hosts. To understand the evolution of MARV at the codon level, we report a comprehensive analysis of synonymous codon usage patterns in MARV genomes. Multiple codon analysis approaches and statistical methods were performed to determine overall codon usage patterns, biases in codon usage, and influence of various factors, including mutation pressure, natural selection, and its two hosts, Homo sapiens and Rousettus aegyptiacus. Results. Nucleotide composition and relative synonymous codon usage (RSCU) analysis revealed that MARV shows mutation bias and prefers U- and A-ended codons to code amino acids. Effective number of codons analysis indicated that overall codon usage among MARV genomes is slightly biased. The Parity Rule 2 plot analysis showed that GC and AU nucleotides were not used proportionally which accounts for the presence of natural selection. Codon usage patterns of MARV were also found to be influenced by its hosts. This indicates that MARV have evolved codon usage patterns that are specific to both of its hosts. Moreover, selection pressure from R. aegyptiacus on the MARV RSCU patterns was found to be dominant compared with that from H. sapiens. Overall, mutation pressure was found to be the most important and dominant force that shapes codon usage patterns in MARV. Conclusions. To our knowledge, this is the first detailed codon usage analysis of MARV and extends our understanding of the mechanisms that contribute to codon usage and evolution of MARV.
Data from: Timing is everything: fishing‐season placement may represent the most important angling‐induced evolutionary pressure on Atlantic salmon populations
Fisheries‐induced evolution can change the trajectory of wild fish populations by selectively targeting certain phenotypes. For important fish species like Atlantic salmon, this could have large implications for their conservation and management. Most salmon rivers are managed by specifying an angling season of predetermined length based on population demography, which is typically established from catch statistics. Given the circularity of using catch statistics to estimate demographic parameters, it may be difficult to quantify the selective nature of angling and its evolutionary impact. In the River Etne in Norway, a recently installed trap permits daily sampling of fish entering the river, some of which are subsequently captured by anglers upstream. Here, we used 31 microsatellites to establish an individual DNA profile for salmon entering the trap, and for many of those subsequently captured by anglers. These data permitted us to investigate time of rod capture relative to river entry, potential body size‐selective harvest, and environmental variables associated with river entry. Larger, older fish entered the river earlier than smaller, younger fish of both sexes, and larger, older females were more abundant than males and vice versa. There was good agreement between the sizes of fish harvested by angling, and the size distribution of the population sampled on the trap. These results demonstrate that at least in this river, and with the current timing of the season, the angling catch reflects the population's demographics and there is no evidence of size‐selective harvest. We also demonstrated that the probability of being caught by angling declines quickly after river entry. Collectively, these data indicate that that the timing of the fishing season, in relation to the upstream migration patterns of the different demographics of the population, likely represents the most significant directional evolutionary force imposed by angling.
Data from: Conflict between biotic and climatic selective pressures acting on an extended phenotype in a subarctic, but not temperate, environment
Climatic selective pressures are thought to dominate biotic selective pressures at higher latitudes. However, few studies have experimentally tested how these selective pressures differentially act on traits across latitudes because traits can rarely be manipulated independently of the organism in nature. We overcame this challenge by using an extended phenotype—active bird nests—and conducted reciprocal transplant experiments between a subarctic and temperate site, separated by 14° of latitude. At the subarctic site, biotic selective pressures (nest predation) favoured smaller, non-local temperate nests, whereas climatic selective pressures (temperature) favoured larger local nests, particularly at colder temperatures. By contrast, at the temperate site, climatic and biotic selective pressures acted similarly on temperate and subarctic nests. Our results illustrate a functional trade-off in the subarctic between nest morphologies favoured by biotic versus climatic selective pressures, with climate favouring local nest morphologies. At our temperate site, however, allocative trade-offs in the time and effort devoted to nest construction favour smaller, local nests. Our findings illustrate a conflict between biotic and climatic selective pressures at the northern extremes of a species geographical range, and suggest that trade-offs between trait function and trait elaboration act differentially across latitude to create broad geographic variation in traits.
Data from: Adaptive evolution in locomotor performance: how selective pressures and functional relationships produce diversity
Despite the complexity of nature, most comparative studies of phenotypic evolution consider selective pressures in isolation. When competing pressures operate on the same system, it is commonly expected that trade-offs will occur that will limit the evolution of phenotypic diversity, however, it is possible that interactions amongst selective pressures may promote diversity instead. We explored the evolution of locomotor performance in lizards in relation to possible selective pressures using the Ornstein-Uhlenbeck process. Here, we show that a combination of selection based on foraging mode and predator escape is required to explain variation in performance phenotypes. Surprisingly, habitat use contributed little explanatory power. We find that it is possible to evolve very different abilities in performance which were previously thought to be tightly correlated, supporting a growing literature that explores the many-to-one mapping of morphological design. While we generally find the expected trade-off between maximal exertion and speed, this relationship surprisingly disappears when species experience selection for both performance types. We conclude that functional integration need not limit adaptive potential, and that an integrative approach considering multiple major influences on a phenotype allows a more complete understanding of adaptation and the evolution of diversity.
Data from: Shifts in selective pressures on snake phototransduction genes associated with photoreceptor transmutation and dim-light ancestry
The visual systems of snakes are heavily modified relative to other squamates, a condition often thought to reflect their fossorial origins. Further modifications are seen in caenophidian snakes, where evolutionary transitions between rod and cone photoreceptors, termed photoreceptor transmutations, have occurred in many lineages. Little previous work, however, has focused on the molecular evolutionary underpinnings of these morphological changes. To address this, we sequenced seven snake eye transcriptomes and utilized new whole genome and targeted capture sequencing data. We used this data to analyze gene loss and shifts in selection pressures in phototransduction genes that may be associated with snake evolutionary origins and photoreceptor transmutation. We identified the surprising loss of rhodopsin kinase (GRK1), despite a low degree of gene loss overall and a lack of relaxed selection early during snake evolution. These results provide some of the first evolutionary genomic corroboration for a dim-light ancestor that lacks strong fossorial adaptations. Our results also indicate that snakes with photoreceptor transmutation experienced significantly different selection pressures from other reptiles. Significant positive selection was found primarily in cone-specific genes, but not rod-specific genes, contrary to our expectations. These results reveal potential molecular adaptations associated with photoreceptor transmutation, and also highlight unappreciated functional differences between rod- and cone-specific phototransduction proteins. This intriguing example of snake visual system evolution illustrates how the underlying molecular components of a complex system can be reshaped in response to changing selection pressures.
Data from: The nature of functional variability in plantar pressure during a range of controlled walking speeds
During walking, variability in step parameters allows the body to adapt to changes in substrate or unexpected perturbations that may occur as the feet interface with the environment. Despite a rich literature describing biomechanical variability in step parameters, there are as yet no studies that consider variability at the body–environment interface. Here, we used pedobarographic statistical parametric mapping (pSPM) and two standard measures of variability, mean square error (m.s.e.) and the coefficient of variation (CV), to assess the magnitude and spatial variability in plantar pressure across a range of controlled walking speeds. Results by reduced major axis, and pSPM regression, revealed no consistent linear relationship between m.s.e. and speed or m.s.e. and Froude number. A positive linear relationship, however, was found between CV and walking speed and CV and Froude number. The spatial distribution of variability was highly disparate when assessed by m.s.e. and CV: relatively high variability was consistently confined to the medial and lateral forefoot when measured by m.s.e., while the forefoot and heel show high variability when measured by CV. In absolute terms, variability by CV was universally low (less than 2.5%). From these results, we determined that variability as assessed by m.s.e. is independent of speed, but dependent on speed when assessed by CV.
Data from: Under pressure? Dental adaptations to termitophagy and vermivory among mammals
The extant mammals have evolved highly diversified diets associated with many specialized morphologies. Two rare diets, termitophagy and vermivory, are characterized by unusual morphological and dental adaptations that have evolved independently in several clades. Termitophagy is known to be associated with increases in tooth number, crown simplification, enamel loss, and the appearance of intermolar diastemata. We observed similar modifications at the species level in vermivorous clades, though interestingly the vermivorous mammals lack secondarily derived tools that compensate for the dentition's reduced function. We argue that the parallel dental changes in these specialists are the result of relaxed selection on occlusal functions of the dentition, which allow a parallel cascade of changes to occur independently in each clade. Comparison of the phenotypes of Rhynchomys, a vermivorous rat, and strains of mice whose EDA pathway has been mutated revealed several shared dental features. Our results point to the likely involvement of this genetic pathway in the rapid, parallel morphological specializations in termitophagous and vermivorous species. We show that diets or feeding mechanisms in other mammals that are linked to decreased reliance on complex can lead to similar cascades of change.
Data from: Grazing pressure affects offspring sex ratio in a socially monogamous passerine on the Tibet Plateau
Livestock grazing can affect habitat structure and availability of arthropod prey for grassland birds, and ultimately determines habitat quality. The habitat quality may affect breeding strategies (e.g. sex ratio adjustment) in bird species, but yet studies investigating grazing intensity on offspring sex ratio are still rare. In this paper, we examined the effect of grazing intensity by livestock on the secondary sex ratio of an alpine-steppe passerine, the Isabelline Wheatear Oenanthe isabellina, on the Tibet Plateau. Offspring sex ratio of Isabelline Wheatears significantly correlated with a quadratic term -- (grazing intensity)2. The wheatears nesting in areas grazed at low intensity by mixed livestocks produced significantly more sons than those in ungrazed area (0.41 vs. 0.58, Z=-2.836, P=0.005), while brood sex ratios from other treatments (ungrazing vs. intensive grazing and low-intensity grazing vs. intensive grazing) did not differ significantly. Variation in offspring sex ratio was not related to other factors such as maternal condition, paternal condition and other two-way interactions. These results suggest that breeding birds of grasslands are sensitive to variation in habitat conditions, and provide additional evidence that grazing intensity affects avian reproduction in cryptic ways that are rarely studied. Our findings suggest that flexible management including timely rotational grazing is needed to optimize bird species reproduction and maintain ecosystem health.
Data from: Multiple sexual selection pressures drive the rapid evolution of complex morphology in a male secondary genital structure
The genitalia of internally fertilizing taxa represent a striking example of rapid morphological evolution. Although sexual selection can shape variation in genital morphology, it has been difficult to test whether multiple sexual selection pressures combine to drive the rapid evolution of individual genital structures. Here, we test the hypothesis that both pre- and postcopulatory sexual selection can act in concert to shape complex structural variation in secondary genital morphology. We genetically modified the size and shape of the posterior lobes of Drosophila melanogaster males and tested the consequences of morphological variation on several reproductive measures. We found that the posterior lobes are necessary for genital coupling and that they are also the targets of multiple postcopulatory processes that shape quantitative variation in morphology, even though these structures make no direct contact with the external female genitalia or internal reproductive organs during mating. We also found that males with smaller and less structurally complex posterior lobes suffer substantial fitness costs in competitive fertilization experiments. Our results show that sexual selection mechanisms can combine to shape the morphology of a single genital structure and that the posterior lobes of D. melanogaster are the targets of multiple postcopulatory selection pressures.
Data from: Reduced survival and reproductive success generates selection pressure for the dengue mosquito Aedes aegypti to evolve resistance against infection by the microsporidian parasite Vavraia culicis
The success and sustainability of control measures aimed at reducing the transmission of mosquito-borne diseases will depend on how they influence the fitness of mosquitoes in targeted populations. We investigated the effects of the microsporidian parasite Vavraia culicis on the survival, blood-feeding behaviour and reproductive success of female Aedes aegypti mosquitoes, the main vector of dengue. Infection reduced survival to adulthood and increased adult female mosquito age-dependent mortality relative to uninfected individuals; this additional mortality was closely correlated with the number of parasite spores they harboured when they died. In the first gonotrophic cycle, infected females were less likely to blood-feed, took smaller meals when they did so, and developed fewer eggs than uninfected females. Even though the conditions of this laboratory study favoured minimal developmental times, the costs of infection were already being experienced by the time females reached an age at which they could first reproduce. These results suggest there will be selection pressure for mosquitoes to evolve resistance against this pathogen if it is used as an agent in a control program to reduce the transmission of mosquito-borne human diseases.
Data from: Role of propagule pressure in colonization success: disentangling the relative importance of demographic, genetic and habitat effects
High propagule pressure is arguably the only consistent predictor of colonization success. More individuals enhance colonization success because they aid in overcoming demographic consequences of small population size (e.g. stochasticity and Allee effects). The number of founders can also have direct genetic effects: with fewer individuals, more inbreeding and thus inbreeding depression will occur, whereas more individuals typically harbour greater genetic variation. Thus, the demographic and genetic components of propagule pressure are interrelated, making it difficult to understand which mechanisms are most important in determining colonization success. We experimentally disentangled the demographic and genetic components of propagule pressure by manipulating the number of founders (fewer or more), and genetic background (inbred or outbred) of individuals released in a series of three complementary experiments. We used Bemisia whiteflies and released them onto either their natal host (benign) or a novel host (challenging). Our experiments revealed that having more founding individuals and those individuals being outbred both increased the number of adults produced, but that only genetic background consistently shaped net reproductive rate of experimental populations. Environment was also important and interacted with propagule size to determine the number of adults produced. Quality of the environment interacted also with genetic background to determine establishment success, with a more pronounced effect of inbreeding depression in harsh environments. This interaction did not hold for the net reproductive rate. These data show that the positive effect of propagule pressure on founding success can be driven as much by underlying genetic processes as by demographics. Genetic effects can be immediate and have sizable effects on fitness.
Data from: Effects of time pressure and time passage on face-matching accuracy
This study investigated the impact of time pressure on matching accuracy with face pairs that combined photographs from student ID cards with high-quality person portraits, and under conditions that provided infrequent identity mismatches. Time pressure was administered via two onscreen displays that observers could use to adjust the amount of time that was allocated to a given trial while completing a block of trials within a required timeframe. Under these conditions, observers matched faces under time pressure that varied from 10 to 2 s (Experiment 1) and 8 to 2 s (Experiment 2). An effect of time pressure was found in each experiment, whereby performance deteriorated under time targets of 4 s. Additionally, a match response bias emerged consistently across blocks, and indicated that separately to time pressure, performance also deteriorated due to time passage. These results therefore indicate that both time passage and pressure exert detrimental effects on face matching.
Data from: Divergence in strategies for coping with winter embolism among co-occurring temperate tree species: the role of positive xylem pressure, wood type and tree stature
1. In temperate ecosystems, freeze-thaw events are an important environmental stress that can induce severe xylem embolism (i.e. clogging of conduits by air bubbles) in overwintering organs of trees. However, no comparative studies of different adaptive strategies among sympatric tree species for coping with winter embolism have examined the potential role of the presence or absence of embolism refilling by positive xylem pressure. 2. We evaluated the degree of winter embolism and hydraulic architecture traits in 22 deciduous angiosperm tree species typical of temperate forest sites in NE China. Co-occurring trees growing in a local botanical garden were used to minimize variation caused by differences in proximal environmental conditions and to ensure that interspecific variation reflected genetic differences between species. 3. Four functional groups with potentially different strategies for coping with winter embolism were compared: positive xylem pressure generating species (PXP) that are all diffuse-porous, except a semi-ring-porous species, large (LDP) and small (SDP) statured diffuse-porous tree species that are unable to generate positive xylem pressure, and ring-porous species (RP). 4. The PXP group exhibited nearly full recovery from winter embolism in contrast to the other three groups, which showed persistent and relatively high degrees of hydraulic dysfunction during the subsequent growing season. The absence of a functional trade-off between hydraulic efficiency and safety against freeze-thaw induced embolism in the PXP group and the presence of a trade-off in the other three groups, suggests that the ability to generate root or stem pressure for embolism refilling may partially free some temperate tree species from adaptive constraints imposed by winter embolism formation. 5. Efficient winter embolism reversal by positive pressure in PXP species did not distinguish them from their non-xylem pressure-generating LDP counterparts in terms of various measures of xylem hydraulic efficiency during the growing season. Divergence in the ability to refill winter embolism through generation of positive xylem pressure implies a series of functional trade-offs that may partially explain the co-existence of these two types of temperate tree species.
Data from: The influence of geographic heterogeneity in predation pressure on mating signal divergence in an Amazonian frog species complex
Sexual section plays an important role in mating signal divergence, but geographic variation in ecological factors can also contribute to divergent signal evolution. We tested the hypothesis that geographic heterogeneity in predation causes divergent selection on advertisement call complexity within the Engystomops petersi frog species complex. We conducted predator phonotaxis experiments at two sites where female choice is consistent with call trait divergence. Engystomops at one site produces complex calls, while the closely related species at the other site produces simple calls. Bats approached complex calls more than simple calls at both sites, suggesting selection against complex calls. Moreover, bat predation pressure was greater at the site with simple calls, suggesting stronger selection against complex calls and potentially precluding evolution of complex calls at this site. Our results show that geographic variation in predation may play an important role in the evolution and maintenance of mating signal divergence.
Data from: Avian predation pressure as a potential driver of periodical cicada cycle length
The extraordinarily long life cycles, synchronous emergences at 13- or 17-year intervals, and complex geographic distribution of periodical cicadas (Magicicada spp.) in eastern North America are an evolutionary enigma. Although a variety of factors, including satiation of above-ground predators and avoidance of interbrood hybridization, have been hypothesized to shape the evolution of this system, no empirical support for these mechanisms has previously been reported beyond the observation that bird predation can extirpate small, experimentally mistimed emergences. Here we show that periodical cicada emergences appear to set populations of potential avian predators on numerical trajectories that result in significantly lower potential predation pressure during the subsequent emergence. This result provides new support for the importance of predators in shaping periodical cicada life history, offers an ecological rationale for why emergences are synchronized at the observed multi-year intervals, and may explain some of the developmental plasticity observed in these unique insects.
Data from: Pore pressure evolution and mass loss of broken gangue during the seepage
Broken gangue consists of different particles, and it has more complicated seepage characteristics than intact rock sample. Using the self-designed instrument, the permeability, mass loss and pore pressure of crushed gangue during the seepage are tested. The result shows that: permeability parameter k of crushed rock has polynomial relationship with effective stress ' in inverse proportion, and permeability parameter β of crushed gangue has power exponent relationship with effective stress ' increasing in direct proportion. 8.0 – 10.0 mm particle size has a good support effect. Inner pressure of crushed rock is mostly linear distribution along the tube wall. After seepage,mass loss of broken gangue mainly increases with large particle size out of proportion.
Data from: Evolution of cross-resistance to medical triazoles in Aspergillus fumigatus through selection pressure of environmental fungicides
Resistance to medical triazoles in Aspergillus fumigatus is an emerging problem for patients at risk of aspergillus diseases. There are currently two presumed routes for medical triazole-resistance selection: (i) through selection pressure of medical triazoles when treating patients and (ii) through selection pressure from non-medical sterol-biosynthesis-inhibiting (SI) triazole fungicides which are used in the environment. Previous studies have suggested that SI fungicides can induce cross-resistance to medical triazoles. Therefore, to assess the potential of selection of resistance to medical triazoles in the environment, we assessed cross-resistance to three medical triazoles in lineages of A. fumigatus from previous work where we applied an experimental evolution approach with one of five different SI fungicides to select for resistance. In our evolved lines we found widespread cross-resistance indicating that resistance to medical triazoles rapidly arises through selection pressure of SI fungicides. All evolved lineages showed similar evolutionary dynamics to SI fungicides and medical triazoles, which suggests that the mutations inducing resistance to both SI fungicides and medical triazoles are likely to be the same. Whole-genome sequencing revealed that a variety of mutations were putatively involved in the resistance mechanism, some of which are in known target genes.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.