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Appendix of "Extreme Precipitation Formation in the south Siberia and Mongolia: Wave Propagation Patterns and zonal Temperature Gradient Changes"
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Fig. 2 in Asymbiotic seed germination and in vitro propagation condition in Calanthe discolor Lindl.
Fig. 2. Effects of culture medium and 1% NaOCl treatment on embryo diameter of Calanthe discolor after 0, 2, 4, 6 and 8 weeks in vitro culture. (A) Effect of treatment with or without 1% NaOCl on seeds in POM medium; (B) SGM medium; (C) MS medium. Values are represented as the mean±SD.
Fig. 1 in Asymbiotic seed germination and in vitro propagation condition in Calanthe discolor Lindl.
Fig. 1. Developmental stages of asymbiotically cultured Calanthe discolor seeds. (A) surface of seed coat without NaOCl treatment; (B) surface of seed coats after 1% NaOCl treatment for 30 min by SEM (arrows: perforation); (C) hyaline embryo, seed coatintact; (D) embryos swollen after 2 weeks of culture; (E) swellled embryos present rhizoids after 6 weeks of culture; (F) appearance of protomeristem and rhiz oid elongation after 7 weeks culture; (G) appearance of chlorophyllous protomeristem after 10 weeks of culture; (H) shoot formation via the shoot axis; (I) The welldeveloped plantlets were removed from POM medium; Scale bars: A, B = 100 μm, CG = 1.0 mm, H, I = 25.0 mm.
Dataset for "Equatorial evolution of the fast magnetosonic mode in the source region: Observation-simulation comparison of the preferential propagation direction"
<p>Includes 2D PIC simulation results presented in the paper.</p>
Figure 5 from: Liu D, Zhou Y, Yang K, Zhang X, Chen Y, Li C, Li H, Song Z (2018) Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation. ZooKeys 792: 117-132. https://doi.org/10.3897/zookeys.792.23785
Figure 5 Neighbor-joining trees of individuals in three Myxocyprinusasiaticus broodstocks based on mtDNA control region.
Figure 1 from: Liu D, Zhou Y, Yang K, Zhang X, Chen Y, Li C, Li H, Song Z (2018) Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation. ZooKeys 792: 117-132. https://doi.org/10.3897/zookeys.792.23785
Figure 1 Map of sampling sites for the three Myxocyprinusasiaticus broodstocks. Key: black triangle Pixian Base of Sichuan Fisheries Research Institute, China (PBS); black star Yinbin Base of Sichuan Fisheries Research Institute, China (YBS); black square Yibin Rare Aquatic Animal Research Institute, China (YRA); broken circle river range where the wild broodstocks source of YBS; broken rectangle river range where the wild broodstocks source of YRA.
Figure 3 from: Liu D, Zhou Y, Yang K, Zhang X, Chen Y, Li C, Li H, Song Z (2018) Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation. ZooKeys 792: 117-132. https://doi.org/10.3897/zookeys.792.23785
Figure 3 Median-joining network of the mtDNA control region haplotypes of Myxocyprinusasiaticus. The size of each circle indicates the frequency of the corresponding haplotype in the whole data set.
Figure 2 from: Liu D, Zhou Y, Yang K, Zhang X, Chen Y, Li C, Li H, Song Z (2018) Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation. ZooKeys 792: 117-132. https://doi.org/10.3897/zookeys.792.23785
Figure 2 Neighbor-joining tree based on FST values of the mtDNA control region (a) and phylogenetic tree of mtDNA control region haplotypes in Myxocyprinusasiaticus reconstructed with Bayesian inference (b). Bayesian posterior probabilities and bootstrap values are shown at nodes of neighbor-joining tree and BI tree, respectively. The number behind each haplotype represents the number of individuals from different sampling locations.
Figure 4 from: Liu D, Zhou Y, Yang K, Zhang X, Chen Y, Li C, Li H, Song Z (2018) Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation. ZooKeys 792: 117-132. https://doi.org/10.3897/zookeys.792.23785
Figure 4 Results of STRUCTURE of Myxocyprinusasiaticus broodstocks based on K = 3. Each column represents one individual and the colors represent the probability membership coefficient of that individual for each genetic cluster.
Hydroacoustic wave propagation from Vema to Bermuda using FDM
<p>An animation of hydroacoustic wave propagation from Vema to Bermuda using FDM</p>
Fig. 3 in Sarcocystis falcatula-like derived from opossum in Northeastern Brazil: In vitro propagation in avian cells, molecular characterization and bioassay in birds
Fig. 3. Dendograms on SAG2, SAG3 and SAG4 genotypes from Sarcocystis spp. that use Brazilian Didelphis spp. as definitive hosts, as proposed by Monteiro et al. (2013) and Valadas et al. (2016). Arrows 1 to 7 correspond to Sarcocystis spp. genotypes derived from budgerigars that were experimentally infected with Didelphis spp. sporocysts (Cesar et al., 2018; Gondim et al., 2017). Arrow 8 identifies a genotype of S. falcatula isolated from a naturally infected bare-faced ibis (Phimosus infuscatus) (Konradt et al., 2017). Arrow 9 represents the current genotype (Sarco-BA1) and those observed in Magellanic penguins (Acosta et al., 2018). SN138 (Lindsay et al., 2004) and SF1 (Marsh et al., 1997) are reference strains of Sarcocystis neurona and Sarcocystis falcatula, respectively. Alleles in shaded boxes correspond to genotypes identified in opossums-derived sporocysts that have not been associated with S. falcatula so far.
Table 2 in Ultrastructure of somatic embryo development and plant propagation for Lachenalia montana
<p><b>Table 2</b> Enhancement of somatic embryos and germination frequency in cell suspension culture from friable embryogenic callus (FEC) of L. montana.</p><table><tbody><tr><th>Sucrose (g L <i>−</i> 1) + PGR (μM) in solid MS medium</th><th>PGR (μM) in liquid MS medium</th><th>Liquid MS medium (MSL)</th><th>Number of SEs/SCV developmental stage</th><th>Germination (%)</th></tr></tbody><tbody><tr><th>6 weeks of culture</th><td>4 weeks of culture</td><td>2 weeks of culture</td><td>Globular</td><td>Different stages of embryo*</td><td></td></tr><tr><th>35 + 10 picloram + 2 BA</th><td>1 picloram</td><td>MSL</td><td>10.0 e</td><td>6.4 e</td><td>0</td></tr><tr><td>1 2,4-D</td><td>MSL</td><td>14.4 cd</td><td>9.0 cd</td><td>0</td></tr><tr><td>1 2,4-D + 0.5 BA</td><td>MSL</td><td>15.0 cd</td><td>9.8 cd</td><td>7.2 e</td></tr><tr><td>1 2,4-D + 0.5 <i>m</i> TR</td><td>MSL</td><td>7.8 f</td><td>6.0 e</td><td>8.6 de</td></tr><tr><td>1 2,4-D + 0.5 TDZ</td><td>MSL</td><td>18.0 b</td><td>12.4 b</td><td>14.0 ab</td></tr><tr><th>35 + 10 2,4-D + 2 TDZ</th><td>1 picloram</td><td>MSL</td><td>6.8 fg</td><td>3.0 f</td><td>0</td></tr><tr><td>1 2,4-D</td><td>MSL</td><td>16.0 cd</td><td>6.8 e</td><td>0</td></tr><tr><td>1 2,4-D + 0.5 BA</td><td>MSL</td><td>18.4 b</td><td>10.0 c</td><td>11.4 c</td></tr><tr><td>1 2,4-D + 0.5 <i>m</i> TR</td><td>MSL</td><td>10.2 e</td><td>6.8 e</td><td>14.3 ab</td></tr><tr><td>1 2,4-D + 0.5 TDZ</td><td>MSL</td><td>21.4 a</td><td>14.6 a</td><td>15.2 a</td></tr></tbody></table><p>PGR = Plant growth regulator. <sub>MSL</sub> = Liquid MS medium.SEs = Somatic embryos.SCV = Settled cell volume.*Different stages of embryo = pear-shaped, early torpedo-shaped, torpedoshaped and cotyledonary-stage embryos. Values with the means derived from 5 replicate (each 500 mg FEC) with 1000 μL SCV of embryogenic suspension cells per replicate. Mean values followed by same letters in each column are not significantly different according to the Duncan's multiple range test at 5% level.</p>
Table 1 in Ultrastructure of somatic embryo development and plant propagation for Lachenalia montana
<p><b>Table 1</b> Effect of sucrose and growth regulators on friable embryogenic callus (FEC) production for somatic embryo (SE) development with 6 weeks of incubation in cell suspension culture of L. montana.</p><table><tbody><tr><th>Sucrose (g L <i>−</i> 1) + PGR (μM) in solid MS medium</th><th>Number of SEs/SCV developmental stage</th><th>Germination (%)</th></tr></tbody><tbody><tr><th>6 weeks of culture</th><td>Globular</td><td>Different stages of embryo*</td><td></td></tr><tr><th>Control</th><td>0</td><td>0</td><td>0</td></tr><tr><th>30 + 10 2,4-D</th><td>4.0 ef</td><td>3.0 gh</td><td>0</td></tr><tr><th>35 + 10 2,4-D</th><td>6.2 de</td><td>4.6 ef</td><td>0</td></tr><tr><th>40 + 10 2,4-D</th><td>7.8 cd</td><td>6.4 de</td><td>0</td></tr><tr><th>35 + 10 2,4-D + 2 BA</th><td>9.4 c</td><td>8.0 c</td><td>0</td></tr><tr><th>35 + 10 2,4-D + 2 TDZ</th><td>14.8 ab</td><td>9.8 a</td><td>0</td></tr><tr><th>30 + 10 picloram</th><td>3.6 f</td><td>2.0 h</td><td>0</td></tr><tr><th>35 + 10 picloram</th><td>7.2 cd</td><td>5.0 ef</td><td>0</td></tr><tr><th>40 + 10 picloram</th><td>10.4 c</td><td>6.6 de</td><td>0</td></tr><tr><th>35 + 10 picloram + 2 BA</th><td>16.2 a</td><td>9.2 ab</td><td>0</td></tr><tr><th>35 + 10 picloram + 2 TDZ</th><td>9.8 c</td><td>7.0 cd</td><td>0</td></tr></tbody></table><p>FEC = Friable embryogenic callus. PGR = Plant growth regulator.SEs = Somatic embryos. SCV = Settled cell volume. *Different stages of embryo = pear-shaped, early torpedoshaped, torpedo-shaped and cotyledonary-stage embryos. Values with the means derived from 5 replicate (each 500 mg FEC) with 1000 μL SCV of embryogenic suspension cells per replicate. Mean values followed by same letters in each column are not significantly different according to the Duncan's multiple range test at 5% level.</p>
Data from: Social conformity and propagation of information in collective u-turns of fish schools
Moving animal groups such as schools of fish or flocks of birds often undergo sudden collective changes of their travelling direction as a consequence of stochastic fluctuations in heading of the individuals. However, the mechanisms by which these behavioural fluctuations arise at the individual level and propagate within a group are still unclear. In the present study, we combine an experimental and theoretical approach to investigate spontaneous collective U-turns in groups of rummy-nose tetra (Hemigrammus rhodostomus) swimming in a ringshaped tank. U-turns imply that fish switch their heading between the clockwise and anticlockwise direction. We reconstruct trajectories of individuals moving alone and in groups of different sizes. We show that the group decreases its swimming speed before a collective U-turn. This is in agreement with previous theoretical predictions showing that speed decrease facilitates an amplification of fluctuations in heading in the group, which can trigger U-turns. These collective U-turns are mostly initiated by individuals at the front of the group. Once an individual has initiated a U-turn, the new direction propagates through the group from front to back without amplification or dampening, resembling the dynamics of falling dominoes. The mean time between collective U-turns sharply increases as the size of the group increases. We develop an Ising spin model integrating anisotropic and asymmetrical interactions between fish and their tendency to follow the majority of their neighbours nonlinearly (social conformity). The model quantitatively reproduces key features of the dynamics and the frequency of collective U-turns observed in experiments.
Data from: The adhesion function of the sodium channel beta subunit (β1) contributes to cardiac action potential propagation
Computational modeling indicates that cardiac conduction may involve ephaptic coupling - intercellular communication involving electrochemical signaling across narrow extracellular clefts between cardiomyocytes. We hypothesized that β1(SCN1B) -mediated adhesion scaffolds trans-activating NaV1.5 (SCN5A) channels within narrow (V1.5. Smart patch clamp (SPC) indicated greater sodium current density (INa) at perinexi, relative to non-junctional sites. A novel, rationally designed peptide, βadp1, potently and selectively inhibited β1-mediated adhesion, in electric cell-substrate impedance sensing studies. βadp1 significantly widened perinexi in guinea pig ventricles, and selectively reduced perinexal INa, but not whol e cell INa, in myocyte monolayers. In optical mapping studies, βadp1 precipitated arrhythmogenic conduction slowing. In summary, β1-mediated adhesion at the perinexus facilitates action potential propagation between cardiomyocytes and may represent a novel target for anti-arrhythmic therapies.
Codes and datasets associated with the paper "Simulating an extreme over-the-horizon optical propagation event over Lake Michigan using a coupled mesoscale modeling and ray tracing framework"
<p>Here, you will find some of the codes, images, and datasets utilized in the article: </p> <p>Basu (2017). "Simulating an extreme over-the-horizon optical propagation event over Lake Michigan using a coupled mesoscale modeling and ray tracing framework", Optical Engineering, 56(7), 071505 (https://doi.org/10.1117/1.OE.56.7.071505)</p> <p>WRF codes: namelist.wps, namelist.input, myoutfields.txt</p> <p>NCL codes: d02_terrain.ncl, wrf_SurfaceASTD_d02.ncl</p> <p>RADAR loop: KGRR.gif</p> <p>MATLAB codes: Plot_Buoy.m</p> <p>Note: buoy datasets are available publicly from https://www.ndbc.noaa.gov/ </p>
Outdoor 60 GHz radio propagation measurements using terragraph channel sounder
<p>This data set contains the measurement data obtained from an outdoor 60 GHz measurement campaign using the Terragraph (TG) channel sounder.</p> <p>The measurement data includes Line-of-Sight path loss for distances up to 130 m, building reflection loss, corner diffraction, and tree trunk attenuation. </p>
Seismic metasurfaces on porous layered media: Surface resonators and fluid-solid interaction effects on the propagation of Rayleigh waves
<p>Matlab codes related to the results in published journal papers: <a href="https://doi.org/10.1016/j.ijengsci.2020.103347">https://doi.org/10.1016/j.ijengsci.2020.103347</a></p>
Bedrock fracture propagation
<p>The data for numerical results presented in the manuscript submitted to JGRES.</p>
RRR/RAPID input and output files corresponding to "Analytical Propagation of Runoff Uncertainty into Discharge Uncertainty through a Large River Network"
<p><strong>Corresponding peer-reviewed publication</strong></p> <p>This dataset corresponds to all the RRR/RAPID input and output files that were used in the study reported in:</p> <ul> <li> <p>David, C. H., J. M. Hobbs, M. J. Turmon, C. M. Emery, J. T. Reager, and J. S. Famiglietti (2019), Analytical Propagation of Runoff Uncertainty into Discharge Uncertainty through a Large River Network, Geophysical Research Letters, 46, 8102–8113, DOI: 10.1029/2019GL083342.</p> </li> </ul> <p>When making use of any of the files in this dataset, please cite both the aforementioned article and the dataset herein. </p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.