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310
datasets available to search
ShareScore release 0.9.0
Dataset results
310 results for “State Model”
Role of Mcam in breast cancer cell state using a model cell line (Py230) [single cell]
GEO Series GSE233092. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide maps of chromatin state in patient-derived model (PDX) of AR-positive or negative CRPC
GEO Series GSE193073. Homo sapiens. 13 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
scRNAseq on skin-draining LN migratory DC in steady state and TSLP-overexpression mouse model
GEO Series GSE278891. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Fed State Prior to Hemorrhagic Shock and Polytrauma in a Porcine Model Results in Altered Liver Transcriptomic Response
GEO Series GSE55674. Sus scrofa. 92 samples. Type: Expression profiling by high throughput sequencing.
Chromatin state and chromatin architecture in mouse embryonic craniofacial tissue, neural crest cell culture model and human primary craniofacial tissue
GEO Series GSE198297. Mus musculus; Homo sapiens. 85 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Prior activation state shapes the microglia response to anti-human TREM2 in a mouse model of Alzheimer's disease
GEO Series GSE156183. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Epigenetic and transcriptomic profiling of mammary gland development and tumor models disclose regulators of cell state plasticity [ATAC-seq]
GEO Series GSE116383. Mus musculus. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Epigenetic and transcriptomic profiling of mammary gland development and tumor models disclose regulators of cell state plasticity [RNA-seq]
GEO Series GSE116385. Mus musculus. 23 samples. Type: Expression profiling by high throughput sequencing.
Epigenetic and transcriptomic profiling of mammary gland development and tumor models disclose regulators of cell state plasticity
GEO Series GSE116386. Mus musculus. 57 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Role of Mcam in breast cancer cell state using a model cell line (Py230)
GEO Series GSE233093. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing; Other.
Genome-wide maps of chromatin state in drug sensitive and resistance Lewis lung carcinoma isograft mouse model
GEO Series GSE70753. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Catalogs and stress history for "stress dependent b value variations in a heterogeneous rate-and-state fault model"
<p>Catalogs of synthetic seismicity and stress history used in the manuscrit "stress dependent b value variations in a heterogeneous rate-and-state fault model".</p>
Fitness to Steady State vs Boolean Model Performance for AGS cell line
<p>For the investigation/analysis based on this dataset, see this report: <a href="https://druglogics.github.io/gitsbe-model-analysis/cascade/fit-perf-ags/main.html">https://druglogics.github.io/gitsbe-model-analysis/cascade/fit-perf-ags/main.html</a></p>
Supporting datasets used in the paper entitled "Black carbon absorption efficiency under preindustrial and present-day conditions simulated by a size- and mixing-state-resolved global aerosol model"
<p>This archive contains datasets used in the paper entitled "Black carbon absorption efficiency under preindustrial and present-day conditions simulated by a size- and mixing-state-resolved global aerosol model".</p>
Additional entanglement spectra for "Quantum Hall states in the Harper-Hofstadter model: existence, stability and novel phase transitions"
<p>Momentum-resolved entanglement spectra for "Quantum Hall states in the Harper-Hofstadter model: existence, stability and novel phase transitions", a PhD thesis submitted to the University of Kent. Included are spectra for:</p> <ul> <li>Fermionic <span class="math-tex">\(\nu = 1/3\)</span> Laughlin states, at <span class="math-tex">\(\chi = 500\)</span>, <span class="math-tex">\(L_y=8\)</span> and various flux densities.</li> <li>Fermionic <span class="math-tex">\(\nu = 2/5\)</span> Laughlin states, at <span class="math-tex">\(\chi = 800\)</span>, various flux densities and circumferences.</li> <li>Bosonic <span class="math-tex">\(\nu = 1/2\)</span> Laughlin states at <span class="math-tex">\(\chi = 500\)</span>, various flux densities and circumferences.</li> </ul>
Data and R-Code from: How to account for behavioral states in step-selection analysis: a model comparison
<p>This repository provides the R-code and data used for the simulation and case study of the research paper: "How to account for behavioral states in step-selection analysis: a model comparison".</p><p>The folder "<strong>Pohle_et_al_2023_BehavioralStates_iSSA_Data</strong>" contains the landscape rasters used for data generation in the simulation study, and the bank vole (<i>Myodes glareolus</i>) movement data used in the case study on bank vole interactions:</p><ul><li>landscape10.RData and landscape50.RData: Landscape rasters for the simulation study.</li><li>Vole_case_control.rds: Case-control bank vole data for the case study.</li><li>Info_replicates.rds: Information about bank vole indiviuals and corresponding replicates for the case study.</li><li>Codebook_case_study.xlsx: Codebook for the case study data sets.</li><li>Read_me.txt</li></ul><p>The folder "<strong>Pohle_et_al_2023_BehavioralStates_iSSA_RCode</strong>" contains the R-scripts for the simulation and case study:</p><ul><li>Functions.R: Functions to apply HMMs, TS-iSSAs, and HMM-iSSAs to movement data; used for the simulation and case study.</li><li>Simulation_study.R: R-Code to run the simulation study. Parallel computation is used.</li><li>Results_simulation_study.R: R-Code to create the result figures and tables for the simulation study.</li><li>Case_study.R: R-Code to run the bank vole interaction case study. Parallel computation is used.</li><li>Results_case_study.R: R-Code to create the result figures and tables for the case study.</li><li>Read_me.txt</li></ul><p>Besides the simulation and case study from the paper, the included functions (<i>Functions.R</i>) can generally be used to perform an HMM-iSSA analysis.</p><p>For the bank vole movement data without control locations, see: Schlägel, U.E. et al. (2019). Data from: Estimating interactions between individuals from concurrent animal movements [Dataset]. Dryad. <a href="https://doi.org/10.5061/dryad.rt535m8">https://doi.org/10.5061/dryad.rt535m8</a>.</p><p><strong>Acknowledgements</strong></p><p>We thank Sophie Eden, Angela Puschmann and Pauline Lange for help with the bank vole data collection and maintenance of the outdoor enclosures.</p><p> </p><p> </p>
Datasets used in the article "Impact of the Initial Stratospheric Polar Vortex State on East Asian Spring Rainfall Prediction in Seasonal Forecast Models"
<p>The seasonal forecast model, National (Beijing) Climate Center (BCC) of China Meteorological Administration (CMA) (<a href="http://s2s.cma.cn/centers?mo=babj_CMA_37">http://s2s.cma.cn/centers?mo=babj_CMA_37</a>) has performed large ensemble forecasts from 2001–2021. The ensemble means of the seasonal forecasts in the first three months are publicly available here. The forecasts begin from late February, and the forecasts in the following three months are analyzed in our submitted paper (22 years, 3 months for per year).</p>
Variational manifolds for ground states and scarred dynamics of blockade-constrained spin models on two and three dimensional lattices
<p>Abstract: We introduce a variational manifold of simple tensor network states for the study of a family of constrained models that describe spin-<span><span><span><span><span><span><span><span>1/</span></span></span><span><span><span>2</span></span></span></span></span></span></span></span> systems as realized by Rydberg atom arrays. Our manifold permits analytical calculation via perturbative expansion of one- and two-point functions in arbitrary spatial dimensions and allows for efficient computation of the matrix elements required for variational energy minimization and variational time evolution in up to three dimensions. We apply this framework to the PXP model on the hypercubic lattice in one, two, and three dimensions and show that, in each case, it exhibits quantum phase transitions breaking the sublattice symmetry in equilibrium, and hosts quantum many-body scars out of equilibrium. We demonstrate that our variational ansatz qualitatively captures all these phenomena and predicts key quantities with an accuracy that increases with the dimensionality of the lattice, and conclude that our method can be interpreted as a generalization of mean-field theory to constrained spin models.</p> <p>Access will be granted upon reasonable request.</p>
Modeling the electronic structure of organic materials: A solid-state physicist's perspective
<p>electronic and optical properties of anthracene molecules and anthracene crystal structure. <br> </p>
PK/PD and Steady State Efficacy Study of Bilastine Compared With Placebo Given Orally in the Treatment of the Symptoms of SAR in an EEC Model (5-arm)
ClinicalTrials.gov study NCT00574210. IPD Sharing: Not stated. Countries: 1. Publications: 0.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.