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1,487 results for “Tagging”
PAIReD Jet Tagging Dataset
<p>Training and testing dataset used in "PAIReD jet: A multi-pronged resonance tagging strategy across all Lorentz boosts" (arXiv:2311.11011).</p> <p>This dataset corresponds to approximately 2% of the dataset used in the article. Five types of jets are simulated: AK4, AK8, AK15, PAIReD, and PAIReDEllipse. Each tar file contains one type of jet. Jets are split into train and test datasets. Three processes, namely ZHbb, ZHcc, and Z+jj are included. The Higgs mass in the training dataset is varied between 10-500 GeV, while the test dataset contains jets arising from a 125 GeV Higgs.</p> <p> </p> <p> </p>
Input files for molecular dynamics simulations of holo CaM tagged with Alexa Fluor 488 and Texas Red dyes using Amber20
<p>Here we share the input files for molecular dynamics simulations of holo CaM tagged with Alexa Fluor 488 and Texas Red dyes using Amber20, as well as the TrESP charges used in TrESP-MMPol electronic coupling calculations of FRET properties. Links to the TrADA tool used to derive TrESP charges and the Trespcoup software used to compute electronic couplings for FRET are indicated below:</p> <div> <div> <div> <p>Cupellini, L., Jurinovich, S., & Mennucci, B. (2024). TraDA - Transition Density Analyzer. Zenodo. https://doi.org/10.5281/zenodo.10966411</p> <p>Cupellini, L., Lipparini, F., & Cignoni, E. (2024). trespcoup - Software to compute TrEsp couplings. Zenodo. https://doi.org/10.5281/zenodo.10966391</p> </div> </div> </div>
The TAG Art
<p>The short documentary "The TAG Art" is the effect of the transcultural research on graffiti and street art and their place in societies between continents of Europe (Poland, Italy) and Africa (Kenya). The aim was to understand better this multifacet phenomena in its variants and interpretations from differently embedded perspectives. It presents views of cities in Poland, Italy and Kenya, and interviews with scholars who participated in the TPAAE project.</p>
Literature Review and Tags
Open the record for dataset details and reuse information.
Supporting data (pre-processed) for: "Frequency-tagged visual evoked responses track syllable effects in visual word recognition"
<p>Pre-processed data. </p> <p>Data were re-referenced off-line to the average of left and right mastoid electrodes, bandpass filtered from 5 to 100 Hz (4th order Butterworth filter) and then segmented to include 200 ms before and 2000 ms after stimulus onset. Epoched data were normalized based on a prestimulus period of 200 ms, and then evaluated according to a sample-by-sample procedure to remove noisy sensors that were replaced using spherical splines. Additionally, EEG epochs that contained data samples exceeding threshold (100 uV) were excluded on a sensor-by-sensor basis, including horizontal and vertical eye channels</p> <p>The original data:<br> Montani, Veronica. (2019). Supporting data for: "Frequency-tagged visual evoked responses track syllable effects in visual word recognition" [Data set]. Zenodo. http://doi.org/10.5281/zenodo.3260451</p>
Leafcutter ants of the genus Atta in the Insects Collection at the Field Museum of Natural History. The field data on the attached tags are transcribed for entry into databases such as AntWeb and the Global Biodiversity Information Facility. Photograph: Matthew Nelsen. in The Evolution of Natural History Collections
Leafcutter ants of the genus Atta in the Insects Collection at the Field Museum of Natural History. The field data on the attached tags are transcribed for entry into databases such as AntWeb and the Global Biodiversity Information Facility. Photograph: Matthew Nelsen.
"Social Tagging as interpretative production: liminality and information practice "
<p>This paper examines recent approaches to tagging and crowdsourcing as communicative practice, viewing social tagging and crowdsourced annotation <br>as liminal communicative practice that throws into relief many conventional assumptions regarding information roles, actions, performances and<br>functions.<br>In this paper, tags and annotations are viewed as paratextual elements, at one and the same time responses, interpretations and productive communicative<br>gestures linked to other documents, themselves also productions and responses. Taggers operate as readers and writers, consumers and producers.<br>yet currently in most systems the opportunities for tagging and communicative practice are limited to the inclusion of one word tags or masheduptags. There is space for new collaborative tagging models to be developed that draw on richer forms of user generated content, perhaps through storytelling, for example, and that develop the creativity inherent in tagging practice to design enhanced KO models and systems.<br>It is in this context that this paper proposes to examine a range of current tagging and annotation practices, and to discuss novel approaches to the representation of knowledge that capitalise on tagging as liminal, productive and performative information practice.</p>
FIG. 1 in A New Non-Invasive Technique for Temporarily Tagging Coral Reef Fishes
FIG. 1. (A) Graphic scheme of the tagging procedure: i) Dry the scales of the fish, scraping gently with a clean cotton tip (moving the top of the cotton tip in the same direction as the fish scales); ii) Apply on the dried area a very small drop of topical tissue adhesive; iii) Place the tag on the spot of adhesive using tweezers; iv) Using a wet cotton tip, press on the tag for few seconds (ensuring that there are no bubbles of air between the tag and the fish scales); v) Finally, apply a small amount of adhesive on the right and left extremities of the tag. This procedure requires less than a minute for each tag. (B) Graphic scheme and photo examples of the six possible combinations of the tags. Positions of the tags along the fish body (horizontal— posterior in orange, middle in yellow, and anterior in purple; and vertical—dorsal in red, central in blue, and ventral in green). Illustrations by RB.
FIG. 2 in A New Non-Invasive Technique for Temporarily Tagging Coral Reef Fishes
FIG. 2. (A) Comparison of attachment time of tags by position (horizontal positions—posterior, middle, and anterior; vertical positions—dorsal, central, and ventral) for left (L) and right (R) side of the fish; box plots show medians, 25th, and 75th percentiles. Black dots represent outliers. (B) Mean attachment time grid by position. Each square represents one of the nine possible tag positions with the relative mean attachment time represented by different color shades (blue-dark purple for mean attachment time between 40–45 hours; light purple-yellow for mean attachment time between 45–50 hours; yellow-orange for mean attachment time between 50–55 hours; orange-red for mean attachment time between 55–60 hours).
FIG. 3 in A New Non-Invasive Technique for Temporarily Tagging Coral Reef Fishes
FIG. 3. Comparison of attachment time (hr) of tags by fish (Fish Identity) ordered by fish size (total length in mm). Box plots show medians, 25th, and 75th percentiles. Black dots represent outliers; gray dots represent total length of fish.
DS6_mT_EEG frequency tagging to track the processing of vibrotactile contrasts.v5.0
<p>EEG frequency spectra, behavioral responses, trial matrices, and Hilbert-transformed banpass-filtered A (standards) and B (oddballs) white noise snippets. See README file for description of experimental conditions and variables.</p>
Ancient Greek Tagging results
<p>Canonical Greek corpus, First 1K Greek corpus, and small Galen corpus tagged using SpaCy and grc_poriel_trf </p>
Data for: Real-time Radial Tagging for Quantification of Left Ventricular Torsion
<p>Magnetic Resonance Imaging measurement and simulation data used in our research about ‘Real-time Radial Tagging for Quantification of Left Ventricular Torsion'.</p>
Data from: Sex-specific responses to territorial intrusions in a communication network: evidence from radio-tagged great tits
Signals play a key role in the ecology and evolution of animal populations, influencing processes such as sexual selection and conflict resolution. In many species, sexually selected signals have a dual function: attracting mates and repelling rivals. Yet, to what extent males and females under natural conditions differentially respond to such signals remains poorly understood, due to a lack of field studies that simultaneously track both sexes. Using a novel spatial tracking system, we tested whether or not the spatial behavior of male and female great tits (Parus major) changes in relation to the response of a territorial male neighbor to an intruder. We tracked the spatial behavior of male and female great tits (N = 44), 1 hr before and 1 hr after simulating territory intrusions, employing automatized Encounternet radio-tracking technology. We recorded the spatial and vocal response of the challenged males and quantified attraction and repulsion of neighboring males and females to the intrusion site. We additionally quantified the direct proximity network of the challenged male. The strength of a male's vocal response to an intruder induced sex-dependent movements in the neighborhood, via female attraction and male repulsion. Stronger vocal responders were older and in better body condition. The proximity networks of the male vocal responders, including the number of sex-dependent connections and average time spent with connections, did not change directly following the intrusion. The effects on neighbor movements suggest that the strength of a male's vocal response can provide relevant social information to both the males and the females in the neighborhood, resulting in both sexes adjusting their spatial behavior in contrasting ways, while the social proximity network remained stable. Moreover, our study underlines the importance of the "silent" eavesdroppers within communication networks for studying the dual functioning and evolution of sexually selected signals.
Competitiveness prediction for nodule colonization in Sinorhizobium meliloti through combined in vitro tagged strain characterization and genome-wide association analysis
<p>Associations between leguminous plants and symbiotic nitrogen-fixing rhizobia are a classic example of mutualism between a eukaryotic host and a specific group of prokaryotic microbes. Although this symbiosis is in part species-specific, different rhizobial strains may colonise the same nodule. Some rhizobial strains are commonly known as better competitors than others, but detailed analyses that aim to predict rhizobial competitive abilities based on genomes are still scarce. Here, we performed a bacterial <em>genome-wide association (GWAS) analysis to define the </em>genomic determinants related to the competitive capabilities in the model rhizobial species <em>Sinorhizobium meliloti.</em> For this, 13 tester strains were GFP-tagged and assayed <i>vs.</i> 3 RFP-tagged reference competitor strains (<em>Rm1021, AK83, and BL225C) in a</em> <i>Medicago sativa</i> nodule occupancy test. Competition data and strain genomic sequences were employed to build a model for GWAS based on <i>k</i>-mers. Among the <i>k</i>-mers with the highest scores, 51 <i>k</i>-mers mapped on the genomes of four strains showing the highest competition phenotypes (> 60% single strain nodule occupancy; GR4, KH35c, KH46 and SM11) <i>vs.</i> BL225C. These <i>k</i>-mers were mainly located on the symbiosis-related megaplasmid pSymA, specifically on genes coding for transporters, proteins involved in the biosynthesis of cofactors and proteins related to metabolism (e.g., fatty acids). The same analysis was performed considering the sum of single and mixed nodules obtained in the competition assays <em>vs. </em>BL225C, retrieving <i>k</i>-mers mapped on the genes previously found and on <i>vir</i> genes. Therefore, the competition abilities seem to be linked to multiple genetic determinants and comprise several cellular components.</p>
Figure 3 in Estimating population density of the medicinal leech Hirudo orientalis Utevsky and Trontelj, 2005 (Clitellata: Hirudinida) using Visible Implant Elastomer tags
Figure 3. The medicinal leech after the injection. The tag in the dorsal surface of leech is shining under the ultraviolet light.
Data from: Endogenous tagging of multiple cellular components in the sea anemone Nematostella vectensis
<p>Data from: Endogenous tagging of multiple cellular components in the sea anemone <em>Nematostella</em> <em>vectensis </em></p> <p>The cnidarian <em>Nematostella</em> <em>vectensis</em> is a powerful model system to study the mechanisms underlying animal development. However, endogenous protein tagging is still challenging. Here we provide information to knock-in fluorescent protein reporters (at lamin, actin, mhc, cdh1, sec61b, rab11a and col4 loci) in <em>the Nematostella</em> genome using CRISPR/Cas9.</p>
Data from: Great tits do not compensate over time for a radio-tag-induced reduction in escape-flight performance
<p>The use of biologging and tracking devices is widespread in avian behavioural and ecological studies. Carrying these devices rarely has major behavioural or fitness effects in the wild, yet it may still impact animals in more subtle ways, such as during high power demanding escape manoeuvres. Here, we tested whether or not great tits (Parus major) carrying a backpack radio-tag changed their body-mass or flight behaviour over time to compensate for the detrimental effect of carrying a tag. We tested 18 great tits, randomly assigned to a control (untagged) or one of two different types of a radio-tag as used in previous studies in the wild (0.9 g or 1.2 g; ~5% or ~6–7% of body mass, respectively), and determined their upward escape-flight performance 1, 7, 14, and 28 days-after-tagging. In between experiments, birds were housed in large free-flight aviaries. For each escape-flight, we used high-speed 3D videography to determine flight paths, escape-flight-speed, wingbeat frequency and actuator-disk-loading (ratio between the bird weight and aerodynamic thrust production capacity). Tagged birds flew upwards with lower escape-flight speeds, caused by an increased actuator-disk-loading. During the 28-day period, all groups slightly increased their body mass and their in-flight wingbeat frequency. In addition, during this period all groups of birds increased their escape-flight speed, but tagged birds did so at a lower rate than untagged birds. This suggests that birds may increase their escape flight performance through skill-learning, however, tagged birds still remained slower than controls. Our findings suggest that tagging a songbird can have a prolonged effect on the performance of rapid flight manoeuvres. Given the absence of tag-effects on reproduction and survival in most songbird radio-tagging studies, tagged birds in the wild might adjust their risk-taking behaviour to avoid performing rapid flight manoeuvres.</p>
Trypanosoma brucei bloodstream form tagging: plate R7852 (replicate dated 20180328)
<p>Trypanosoma brucei bloodstream form tagging protein localisation data. Widefield epifluorescence microscope images of protein subcellular localisation in the bloodstream form life cycle stage of the unicellular eukaryotic pathogen <em>Trypanosoma brucei</em> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate R7852, replicate dated 20180328.</p>
Trypanosoma brucei bloodstream form tagging: plate R7854 (replicate dated 20180403)
<p>Trypanosoma brucei bloodstream form tagging protein localisation data. Widefield epifluorescence microscope images of protein subcellular localisation in the bloodstream form life cycle stage of the unicellular eukaryotic pathogen <em>Trypanosoma brucei</em> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate R1566, replicate dated 20180201.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.