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Full dataset of several mechanical tests on an S355 steel sheet as reference data for digital representations
<p>The dataset provided in this repository comprises data obtained from a series of characterization tests performed to a sheet of typical S355 (material number: 1.0577) structural steel (designation of steel according to DIN EN 10025-2:2019). The tests include methods for the determination of mechanical properties such as, e.g., tensile test, Charpy test and sonic resonance test. This dataset is intended to be extended by the inclusion of data obtained from further test methods. Therefore, the entire dataset (concept DOI) comprises several parts (versions), each of which is addressed by a unique version DOI.</p> <p>The data were generated in the frame of the digitization project Innovationplatform Material<em>Digital </em>(PMD) which, amongst other activities, aims to store data in a semantically and machine understandable way. Therefore, data structuring and data formats are focused in addition to aspects in the field of material science and engineering (MSE). Hence, this data is supposed to provide reference data as basis for experimental data inclusion, conversion and structuring (data management and processing) that leads to semantical expressivity as well as for MSE experts being generally interested in the material properties and knowledge.</p>
Three-dimensional Digital Outcrop Models of the Tullig Sandstone, Western Irish Namurian Basin, Co. Clare, Ireland
<p>Tullig Sandstone is part of the Tullig Cyclothem, Western Irish Namurian Basin, Co. Clare, Ireland. The Tullig Sandstone is a prominent sandstone interval that represents an ancient fluvial-deltaic system. </p> <p>Outcrops of the Tullig Sandstone were surveyed by an unmanned aerial vehicle (UAV, DJI Mavic Pro Platinum™). Three-dimensional digital outcrop models were generated from images collected from UAV using Agisoft Metashape™.</p>
Supplementary data for Plutniak, S. 2022. "What makes the identity of a scientific method? A history of the 'Structural and analytical typology' in the growth of evolutionary and digital archaeology in southwestern Europe (1950s–2000s)", Journal of Paleolithic Archaeology, vol. 5, 10.
<p>Supplementary data for Plutniak, S. 2022. “What makes the Identity of a Scientific Method? A History of the ‘Structural and analytical typology’ in the Growth of Evolutionary and Digital Archaeology in Southwestern Europe (1950s–2000s)”, <em>Journal of Paleolithic Archaeology</em>. vol 5, 10. DOI: <a href="https://doi.org/10.1007/s41982-022-00119-7">10.1007/s41982-022-00119-7</a>.</p> <p> </p> <p> </p> <p> </p>
Figure 1 in HighRes for journal article "Critical digital literacy as a key for (post)digital citizenship: an international review of teacher competence frameworks"
<p>Detail for the figure: Figure 1. Location and scope of the sample of TCFs analysed in this study.</p> <p>Created with mapchart.net</p> <p>In the following article: Villar-Onrubia, D., Morini, L., Marín, V. I., & Nascimbeni, F. (2022). Critical digital literacy as a key for (post)digital citizenship: an international review of teacher competence frameworks. <em>Journal of e-Learning and Knowledge Society, 18(3)</em>, 128-139. https://doi.org/10.20368/1971-8829/1135697</p>
Preserving and sharing born-digital and hybrid objects from and across the National Collection (Decision-Making Model)
<p>When considering the complex challenges faced by cultural heritage organisations in collecting, preserving and sharing born digital and hybrid objects, it becomes clear that the process of defining solutions as a community of practice is in its early probing phase: characterised as tentative, exploratory, questioning, experimental. The workshops within this Preserving and sharing born-digital and hybrid objects from and across the National Collection project, which examined the case studies from multiple angles, yielded a richly discursive examination of the main considerations.</p> <p>This Decision Model represents an attempt to create a structured representation of those main considerations and the discourse from the workshops, to codify the main decision-making processes that an organisation may go through when assessing an acquisition of such an object, categorised into high level areas. It attempts to create a traversable system that could be used by collections professionals in their work - policy makers, managers, collections management or digital preservation practitioners, conservators.</p>
Preserving and sharing born-digital and hybrid objects from and across the National Collection (January 2022)
<p>This report is one of a set of outputs from the Arts and Humanities Research Council funded project ‘Preserving and sharing born-digital and hybrid objects from and across the National Collection’. It has been designed to provide an extensive account of the project research activities and findings, to be useful to museum, heritage, and preservation professionals, as well as to scholars interested in born-digital materials.</p>
Born Digital, Born Slippery - Data Modelling for Born Digital/Hybrid objects (March 2022)
<p>The report Preserving and sharing born-digital and hybrid objects from and across the National Collection discusses the challenges for cultural heritage institutions in cataloguing, preserving, and providing access to four born digital and hybrid objects/projects. This response looks at the issues brought up by those discussions, in particular for the purpose of cataloguing, and the extent, within existing cataloguing standards, they can be supported. Where there does not appear to be support within current standards, model development activity is proposed to allow the expansion of the current `born physical` focused cataloguing standards to also handle born digital and hybrid object cataloguing.</p>
pl-wnifc/humdrum-polish-scores: Digital scores from the "Polish Music Heritage in Open Access" project
<p>Digital scores from the Polish Music Heritage in Open Access project</p> <p>This repository contains transcriptions from the Heritage of Polish Music in Open Access project at the <a href="https://nifc.pl/en">Chopin Institute</a> in the Humdrum digital score format. Files are organized by the RISM siglum ID of the source archive.</p> <p>Frontend</p> <p>The main user interface for these digital scores is at <a href="https://polishscores.org/">https://polishscores.org/</a>. All transcriptions include scans of the physical scores.</p> <p>Staff:</p> <ul> <li><strong>Lead</strong>: Marcin Konik</li> <li><strong>Technical Lead</strong>: Craig Stuart Sapp</li> <li><strong>Project Manager</strong>: Jacek Iwaszko</li> <li><strong>Metadata Manager: </strong>Marcelina Chojecka</li> <li><strong>Assistant Project Manager</strong>: Emilia Ziętek</li> </ul> <p> </p> <p>Data created within EU funded project "Polish Music Heritage in Open Access"</p> <p>Co-financed by the Ministry of Culture and National Heritage</p> <p> </p> <table align="left"> <caption>Archives represented in repository</caption> <thead> <tr> <th scope="col">Siglum</th> <th scope="col">Library</th> <th scope="col">Scores</th> </tr> </thead> <tbody> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-cz/kern">pl-cz</a></td> <td><a href="https://jasnagora.pl/en/o-sanktuarium/biblioteki/biblioteka-jasnogorska">Jasna Góra Monastery</a></td> <td>1294</td> </tr> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-gd/kern">pl-gd</a></td> <td><a href="https://bgpan.gda.pl/?lang=en">Gdańsk Library PAoS</a></td> <td>244</td> </tr> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-kc/kern">pl-kc</a></td> <td><a href="https://mnk.pl/branch/the-princes-czartoyski-library">Czartoryski Library, Cracow</a></td> <td>108</td> </tr> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-kj/kern">pl-kj</a></td> <td><a href="https://bj.uj.edu.pl/en_GB/start-en">Jagiellonian Library, Cracow</a></td> <td>29</td> </tr> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-kk/kern">pl-kk</a></td> <td><a href="http://akkk.com.pl/">Wawel Cathedral, Cracow</a></td> <td>1720</td> </tr> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-kozmzk/kern">pl-kozmzk</a></td> <td><a href="https://www-muzeumzamoyskich-pl.translate.goog/?_x_tr_sch=http&_x_tr_sl=auto&_x_tr_tl=en&_x_tr_hl=en">Zamoyski Museum, Kozłówka</a></td> <td>168</td> </tr> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-sa/kern">pl-sa</a></td> <td><a href="http://bc.bdsandomierz.pl/dlibra?language=en">Diocesan Library, Sandomierz</a></td> <td>1244</td> </tr> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-stab/kern">pl-stab</a></td> <td><a href="https://rism.info/library_collections/2017/09/28/music-in-the-convent-of-st-adalberts-abbey-in.html">St. Adalbert Abbey, Staniątki</a></td> <td>154</td> </tr> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-wn/kern">pl-wn</a></td> <td><a href="https://www.bn.org.pl/en">Polish National Library</a></td> <td>496</td> </tr> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-wnifc/kern">pl-wnifc</a></td> <td><a href="https://nifc.pl/en">Chopin Institute, Warsaw</a></td> <td>390</td> </tr> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-wtm/kern">pl-wtm</a></td> <td><a href="http://warszawskietowarzystwomuzyczne.pl/biblioteka/">Warsaw Music Society</a></td> <td>1163</td> </tr> <tr> <td><a href="https://github.com/pl-wnifc/humdrum-polish-scores/tree/main/pl-wumfc/kern">pl-wumfc</a></td> <td><a href="http://www.biblioteka.chopin.edu.pl/pl">Chopin University of Music</a></td> <td>151</td> </tr> </tbody> </table> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p>
Digital Pathology Dataset for Prostate Cancer Diagnosis
<p>Links to code and <em>Patterns</em> paper:</p> <p>1. <a href="https://10.5281/zenodo.7152962">Multi-lens Neural Machine (MLNM) Code</a></p> <p>2. <a href="https://www.cell.com/patterns/fulltext/S2666-3899(22)00274-4">An AI-assisted Tool For Efficient Prostate Cancer Diagnosis in Low-grade and Low-volume Cases</a></p> <p>Digitized hematoxylin and eosin (H&E)-stained whole-slide-images (WSIs) of 40 prostatectomy and 59 core needle biopsy specimens were collected from 99 prostate cancer patients at Tan Tock Seng Hospital, Singapore. There were 99 WSIs in total such that each specimen had one WSI. H&E-stained slides were scanned at 40× magnification (specimen-level pixel size 0·25μm × 0·25μm) using Aperio AT2 Slide Scanner (Leica Biosystems). Institutional board review from the hospital were obtained for this study, and all the data were de-identified.</p> <p>Prostate glandular structures in core needle biopsy slides were manually annotated and classified using the ASAP annotation tool (<a href="https://computationalpathologygroup.github.io/ASAP/">ASAP</a>). A senior pathologist reviewed 10% of the annotations in each slide, ensuring that some reference annotations were provided to the researcher at different regions of the core. It is to be noted that partial glands appearing at the edges of the biopsy cores were not annotated.</p> <p> </p> <p><strong>Whole Slide Image Dataset </strong></p> <p>Whole Slide Image dataset containing 99 images in SVS format with corresponding annotations in XML format are provided in WSI.zip. Available patient grading for the WSIs are provided in 'gleason_score_mapped.txt'. These XML annotations can be parsed using the code in official repository.</p> <p><strong>Cropped Image Dataset </strong></p> <p>Patches of size 512 × 512 pixels were cropped from the WSI (Whole Slide Image Dataset) at resolutions 5×, 10×, 20×, and 40× with an annotated gland centered at each patch. This dataset contains these cropped images.</p> <p>This dataset is used to train the two AI models for Gland Segmentation (99 patients) and Gland Classification (46 patients). Tables 1 and 2 illustrate both gland segmentation and gland classification datasets. We have put the two corresponding sub-datasets as two zip files as follows:</p> <ol> <li>gland_segmentation_dataset.zip</li> <li>gland_classification_dataset.zip</li> </ol> <p><strong>Table 1:</strong> The number of slides and patches in training, validation, and test sets for gland segmentation task. There is one H&E stained WSI for each prostatectomy or core needle biopsy specimen.</p> <table> <tbody> <tr> <td> <p> </p> </td> <td> <p><strong>#Slides</strong></p> </td> <td> <p> </p> </td> <td> <p> </p> </td> <td> <p> </p> </td> </tr> <tr> <td> <p> </p> </td> <td> <p>Train</p> </td> <td> <p>Valid</p> </td> <td> <p>Test</p> </td> <td> <p><strong>Total</strong></p> </td> </tr> <tr> <td> <p>Prostatectomy</p> </td> <td> <p>17</p> </td> <td> <p>8</p> </td> <td> <p>15</p> </td> <td> <p>40</p> </td> </tr> <tr> <td> <p>Biopsy</p> </td> <td> <p>26</p> </td> <td> <p>13</p> </td> <td> <p>20</p> </td> <td> <p>59</p> </td> </tr> <tr> <td> <p><strong>Total</strong></p> </td> <td> <p>43</p> </td> <td> <p>21</p> </td> <td> <p>35</p> </td> <td> <p>99</p> </td> </tr> <tr> <td> <p> </p> </td> <td> <p><strong>#Patches</strong></p> </td> <td> <p> </p> </td> <td> <p> </p> </td> <td> <p> </p> </td> </tr> <tr> <td> <p> </p> </td> <td> <p>Train</p> </td> <td> <p>Valid</p> </td> <td> <p>Test</p> </td> <td> <p><strong>Total</strong></p> </td> </tr> <tr> <td> <p>Prostatectomy</p> </td> <td> <p>7795</p> </td> <td> <p>3753</p> </td> <td> <p>7224</p> </td> <td> <p>18772</p> </td> </tr> <tr> <td> <p>Biopsy</p> </td> <td> <p>5559</p> </td> <td> <p>4028</p> </td> <td> <p>5981</p> </td> <td> <p>15568</p> </td> </tr> <tr> <td> <p><strong>Total</strong></p> </td> <td> <p>13354</p> </td> <td> <p>7781</p> </td> <td> <p>13205</p> </td> <td> <p>34340</p> </td> </tr> </tbody> </table> <p><strong>Table 2:</strong> The number of slides and patches in training, validation, and test sets for gland classification task. There is one H&E stained WSI for each prostatectomy or core needle biopsy specimen. The gland classification datasets are the subsets of the gland segmentation datasets. <strong>GS</strong>: Gleason Score. <strong>B</strong>: Benign. <strong>M</strong>: Malignant.</p> <table> <tbody> <tr> <td> <p> </p> </td> <td> <p><strong>#Slides (GS 3+3:3+4:4+3)</strong></p> </td> <td> <p> </p> </td> <td> <p> </p> </td> <td> <p> </p> </td> </tr> <tr> <td> <p> </p> </td> <td> <p>Train</p> </td> <td> <p>Valid</p> </td> <td> <p>Test</p> </td> <td> <p><strong>Total</strong></p> </td> </tr> <tr> <td> <p>Biopsy</p> </td> <td> <p>10:9:1</p> </td> <td> <p>3:7:0</p> </td> <td> <p>6:10:0</p> </td> <td> <p>19:26:1</p> </td> </tr> <tr> <td> <p> </p> </td> <td> <p><strong>#Patches (B:M)</strong></p> </td> <td> <p> </p> </td> <td> <p> </p> </td> <td> <p> </p> </td> </tr> <tr> <td> <p> </p> </td> <td> <p>Train</p> </td> <td> <p>Valid</p> </td> <td> <p>Test</p> </td> <td> <p><strong>Total</strong></p> </td> </tr> <tr> <td> <p>Biopsy</p> </td> <td> <p>1557:2277</p> </td> <td> <p>1216:1341</p> </td> <td> <p>1543:2718</p> </td> <td> <p>4316:6336</p> </td> </tr> </tbody> </table> <p><strong>NB:</strong> Gland classification folder (gland_classification_dataset.zip) may contain extra patches, labels of which could not be identified from H&E slides. They were not used in the machine learning study.</p>
Text-fig. 5. Extant Fraxinus fruits photographed by digital camera and X-ray microscopy. a: F. excelsior L. (Sect. Fraxinus); b: F. xanthoxyloides WALL. (Sect. Sciadanthus); c: F. malacophylla HEMSL. (Sect. Ornus). Red arrow refers to the air sac above seed, scale bars = 1 cm. in Fraxinus L. (Oleaceae) Fruits From The Early Oligocene Of Southwest China And Their Biogeographic Implications
Text-fig. 5. Extant Fraxinus fruits photographed by digital camera and X-ray microscopy. a: F. excelsior L. (Sect. Fraxinus); b: F. xanthoxyloides WALL. (Sect. Sciadanthus); c: F. malacophylla HEMSL. (Sect. Ornus). Red arrow refers to the air sac above seed, scale bars = 1 cm.
Text-fig. 10. Langtonia bisulcata REID et CHANDLER. a, b, e–g: Holotype, V. 22984, from micro-CT data. a: Dorsiventral view surface rendering. b: Dorsiventral view translucent volume rendering showing outline of locule cast. c: Equatorial transverse fracture showing paired dorsal infolds and locules with shape of a ε in cross section, reflected light, V. 22993. d: Digital transverse section from micro-CT data, of fruit with two well developed ε-shaped locules, V. 22985. e–g: Successive digital transverse sections with one well developed ε-shaped locule and infolds of the abortive locule visible in (g) (arrows). h–j: Physical transverse thin sections of specimen from middle Eocene Clarno Formation, Oregon, USA with well-preserved mesocarp including longitudinal canals in (j) (arrows), USNM 424875; Scale bars 0.5 cm in (a, b), 2.5 mm in (c–g), 5 mm in (h), 2 mm in (i), 1 mm in (j); (a, b) share same scale bar; (c, d) share same scale bar; (e, f, g) share same scale bar. in Mastixioid Fruits (Cornales) From The Early Eocene London Clay Flora: Morphology, Anatomy And Nomenclatural Revision
Text-fig. 10. Langtonia bisulcata REID et CHANDLER. a, b, e–g: Holotype, V. 22984, from micro-CT data. a: Dorsiventral view surface rendering. b: Dorsiventral view translucent volume rendering showing outline of locule cast. c: Equatorial transverse fracture showing paired dorsal infolds and locules with shape of a ε in cross section, reflected light, V. 22993. d: Digital transverse section from micro-CT data, of fruit with two well developed ε-shaped locules, V. 22985. e–g: Successive digital transverse sections with one well developed ε-shaped locule and infolds of the abortive locule visible in (g) (arrows). h–j: Physical transverse thin sections of specimen from middle Eocene Clarno Formation, Oregon, USA with well-preserved mesocarp including longitudinal canals in (j) (arrows), USNM 424875; Scale bars 0.5 cm in (a, b), 2.5 mm in (c–g), 5 mm in (h), 2 mm in (i), 1 mm in (j); (a, b) share same scale bar; (c, d) share same scale bar; (e, f, g) share same scale bar.
Text-fig. 9. Portnallia. a–j: P. bognorensis M.CHANDLER. a–g: Holotype, V. 30421. a: Oblique lateral view with dorsal surface of locule cast facing towards right side. b: Basal view (original illustration from pl. 28, fig. 40 of Chandler 1961). c–g: Micro CT data. c–f: Surface renderings. c: Lateral view with interlocular septum facing forward. d: lateral view with dorsal surface of locule facing forward. e: Basal view. f: Apical view. g: Digital transverse section near equatorial position showing (c) to u-shaped locules. h: Apical view of tetralocular fruit, V. 30423 (original illustration from pl. 28, fig. 42 of Chandler 1961). i: Transverse section of specimen in (h), reflected light. j–o: P. sheppeyensis M.CHANDLER, Holotype V. 30428, here synomomized with P. bognorensis, from micro-CT data. j–m: Surface renderings. j: Lateral view with interlocular septum facing forward. k: Lateral view with dorsal surface of locule facing forward. l: Basal view. m: Apical view. n: Digital equatorial transverse section showing the three preserved locules and extensive cracking due to pyrite decomposition. o: Translucent volume rendering, apical view showing (c) to u-shaped locules. Scale bars 2 mm, bar in (a) applies also to (b), bar in (e) applies to also to (c, d), bar in (g) applies also to (f), bar in (j) applies to applies also to (k–m). in Mastixioid Fruits (Cornales) From The Early Eocene London Clay Flora: Morphology, Anatomy And Nomenclatural Revision
Text-fig. 9. Portnallia. a–j: P. bognorensis M.CHANDLER. a–g: Holotype, V. 30421. a: Oblique lateral view with dorsal surface of locule cast facing towards right side. b: Basal view (original illustration from pl. 28, fig. 40 of Chandler 1961). c–g: Micro CT data. c–f: Surface renderings. c: Lateral view with interlocular septum facing forward. d: lateral view with dorsal surface of locule facing forward. e: Basal view. f: Apical view. g: Digital transverse section near equatorial position showing (c) to u-shaped locules. h: Apical view of tetralocular fruit, V. 30423 (original illustration from pl. 28, fig. 42 of Chandler 1961). i: Transverse section of specimen in (h), reflected light. j–o: P. sheppeyensis M.CHANDLER, Holotype V. 30428, here synomomized with P. bognorensis, from micro-CT data. j–m: Surface renderings. j: Lateral view with interlocular septum facing forward. k: Lateral view with dorsal surface of locule facing forward. l: Basal view. m: Apical view. n: Digital equatorial transverse section showing the three preserved locules and extensive cracking due to pyrite decomposition. o: Translucent volume rendering, apical view showing (c) to u-shaped locules. Scale bars 2 mm, bar in (a) applies also to (b), bar in (e) applies to also to (c, d), bar in (g) applies also to (f), bar in (j) applies to applies also to (k–m).
Text-fig. 8. Lanfrancia subglobosa E.REID et M.CHANDLER. a–c, e–g: Holotype V. 23014. a: reflected light. b, c: Surface renderings from micro-CT data. a, b: Lateral views with dorsal surface of locule facing forward and locule casts protruding in upper part. c: Apical view. d: Fruit showing two locule casts the dorsal surfaces of which face to the left and the right, V. 30417(1). e–g: Successive digital transverse sections showing four u to v to c-shaped locules from micro-CT data. h: Physical transverse section of specimen in (d). i–k: Physical transverse section, V. 30419 from Herne Bay, blue lines in K indicating limits of fibre layer lining the locule. l: Detail from (h), showing sclerenchyma composing the septa and central axis. m: Transverse section, enlargement from (i), showing anatomy of tissues adjacent to the dorsal infold. Blue lines indicate limits of the fibre layer lining the locule. n: Part of (m) recut, tangential section transecting the dorsal infold (central), both limbs of the locule cast, and peripheral parts of the pericarp on either side. o: Detail from (n), showing anatomy of the infold. Scale bars 5 mm in (a–h) (a–g share the same bar), 3 mm in (i), 1 mm in (j–m), 0.5 mm in (n), 0.2 mm in (o). in Mastixioid Fruits (Cornales) From The Early Eocene London Clay Flora: Morphology, Anatomy And Nomenclatural Revision
Text-fig. 8. Lanfrancia subglobosa E.REID et M.CHANDLER. a–c, e–g: Holotype V. 23014. a: reflected light. b, c: Surface renderings from micro-CT data. a, b: Lateral views with dorsal surface of locule facing forward and locule casts protruding in upper part. c: Apical view. d: Fruit showing two locule casts the dorsal surfaces of which face to the left and the right, V. 30417(1). e–g: Successive digital transverse sections showing four u to v to c-shaped locules from micro-CT data. h: Physical transverse section of specimen in (d). i–k: Physical transverse section, V. 30419 from Herne Bay, blue lines in K indicating limits of fibre layer lining the locule. l: Detail from (h), showing sclerenchyma composing the septa and central axis. m: Transverse section, enlargement from (i), showing anatomy of tissues adjacent to the dorsal infold. Blue lines indicate limits of the fibre layer lining the locule. n: Part of (m) recut, tangential section transecting the dorsal infold (central), both limbs of the locule cast, and peripheral parts of the pericarp on either side. o: Detail from (n), showing anatomy of the infold. Scale bars 5 mm in (a–h) (a–g share the same bar), 3 mm in (i), 1 mm in (j–m), 0.5 mm in (n), 0.2 mm in (o).
Text-fig. 6. Exbeckettia mastixioides (E.REID et M.CHANDLER) comb. nov. from the London Clay. a–f: Holotype, V. 23002, bilocular fruit. a–d: Surface renderings from micro-CT data. a: Apical view. b: Basal view. c: Lateral view with dorsal surface of locule facing forward. d: lateral view with interlocular septum facing forward. e, f: Digital sections from micro-CT data. e: transverse equatorial showing U-shaped locules and distinct dark endocarp (arrows). f: Median longitudinal intercepting both locules. g: lateral view of bilocular fruit with interlocular septum facing forward. V. 23013(3). h: Apical view of bilocular fruit with two exposed locule casts, V. 23013(1). i–l: Fruits in physical transverse section showing U-shaped locules and distinct locule lining. i: Bilocular fruit shown in (g). j: Bilocular fruit, V. 23007. k: Fruit with one locule larger than the other, V. 23006. l: Tetralocular fruit, V. 22993. Scale bar 5 mm in (a–l), bar in (a) applies also to (b–d), bar in (e) applies also to (f), bar in (j) applies to (i–l). in Mastixioid Fruits (Cornales) From The Early Eocene London Clay Flora: Morphology, Anatomy And Nomenclatural Revision
Text-fig. 6. Exbeckettia mastixioides (E.REID et M.CHANDLER) comb. nov. from the London Clay. a–f: Holotype, V. 23002, bilocular fruit. a–d: Surface renderings from micro-CT data. a: Apical view. b: Basal view. c: Lateral view with dorsal surface of locule facing forward. d: lateral view with interlocular septum facing forward. e, f: Digital sections from micro-CT data. e: transverse equatorial showing U-shaped locules and distinct dark endocarp (arrows). f: Median longitudinal intercepting both locules. g: lateral view of bilocular fruit with interlocular septum facing forward. V. 23013(3). h: Apical view of bilocular fruit with two exposed locule casts, V. 23013(1). i–l: Fruits in physical transverse section showing U-shaped locules and distinct locule lining. i: Bilocular fruit shown in (g). j: Bilocular fruit, V. 23007. k: Fruit with one locule larger than the other, V. 23006. l: Tetralocular fruit, V. 22993. Scale bar 5 mm in (a–l), bar in (a) applies also to (b–d), bar in (e) applies also to (f), bar in (j) applies to (i–l).
Text-fig. 1. Diplopanax cacaoides (ZENKER) comb. nov. a–d: [Holotype of Mastixia cantia E.REID et M.CHANDLER, V.22953]. a: Lateral view of longitudinally broken specimen, reflected light. b–d: Surface renderings from micro-CT data. b: Lateral view of longitudinal fracture surface. c: Same specimen rotated to show external surface. d: Enlargement of lower half from (a, b), reflected light. e, f: Specimen figured originally as a paratype of M. cantia, V.22954 (Reid and Chandler 1933: pl. 25, fig. 3), reflected light. e: Ventral view with much of the endocarp wall fallen away exposing smooth convex ventral surface of locule cast. f: Transversely fractured surface, showing thick wall of the endocarp, and dehiscence plane leading to the left limb of the locule. g: Transversely sectioned, laterally compressed specimen from Miocene of Wiesa, Germany for comparison, Senckenberg Museum, SM.B. 21034/I. h–j: Digital transverse sections from micro-CT data of the Holotype V.22953. h: Transverse fracture surface from (b), showing curved locule and zone of weakness defining the germination valve (arrow), reflected light. i: Same orientation with clear demarcation of the separation plane of the germination valve (arrow), digital section from micro-CT scan. j: Enlargement from (h). Scale bars 5 mm. in Mastixioid Fruits (Cornales) From The Early Eocene London Clay Flora: Morphology, Anatomy And Nomenclatural Revision
Text-fig. 1. Diplopanax cacaoides (ZENKER) comb. nov. a–d: [Holotype of Mastixia cantia E.REID et M.CHANDLER, V.22953]. a: Lateral view of longitudinally broken specimen, reflected light. b–d: Surface renderings from micro-CT data. b: Lateral view of longitudinal fracture surface. c: Same specimen rotated to show external surface. d: Enlargement of lower half from (a, b), reflected light. e, f: Specimen figured originally as a paratype of M. cantia, V.22954 (Reid and Chandler 1933: pl. 25, fig. 3), reflected light. e: Ventral view with much of the endocarp wall fallen away exposing smooth convex ventral surface of locule cast. f: Transversely fractured surface, showing thick wall of the endocarp, and dehiscence plane leading to the left limb of the locule. g: Transversely sectioned, laterally compressed specimen from Miocene of Wiesa, Germany for comparison, Senckenberg Museum, SM.B. 21034/I. h–j: Digital transverse sections from micro-CT data of the Holotype V.22953. h: Transverse fracture surface from (b), showing curved locule and zone of weakness defining the germination valve (arrow), reflected light. i: Same orientation with clear demarcation of the separation plane of the germination valve (arrow), digital section from micro-CT scan. j: Enlargement from (h). Scale bars 5 mm.
Text-fig. 4. Mastixia cf. oregonensis (R.A.SCOTT) TIFFNEY et HAGGARD from the London Clay, originally included within the concept of M. cantiensis. a–c: V. 22960(1). a: Transverse fracture, showing c-shaped locule, dorsal infold, and sculptured endocarp, reflected light. b: Transverse digital section from micro-CT scan data. c: Surface view of ribbed endocarp extracted from micro-CT data. d: Transverse fracture, reflected light, V. 22955 (originally illustrated in pl. 25, fig. 4 of Reid and Chandler 1933). e, f: Transverse physical section, V. 22963(2) showing U-shaped locule and longitudinal dorsal infold. g–i reflected light. g: Detail from left of (d). h, i: Detail from right of (f). Scale bars 5 mm in (a–f), 1 mm in (g–i). in Mastixioid Fruits (Cornales) From The Early Eocene London Clay Flora: Morphology, Anatomy And Nomenclatural Revision
Text-fig. 4. Mastixia cf. oregonensis (R.A.SCOTT) TIFFNEY et HAGGARD from the London Clay, originally included within the concept of M. cantiensis. a–c: V. 22960(1). a: Transverse fracture, showing c-shaped locule, dorsal infold, and sculptured endocarp, reflected light. b: Transverse digital section from micro-CT scan data. c: Surface view of ribbed endocarp extracted from micro-CT data. d: Transverse fracture, reflected light, V. 22955 (originally illustrated in pl. 25, fig. 4 of Reid and Chandler 1933). e, f: Transverse physical section, V. 22963(2) showing U-shaped locule and longitudinal dorsal infold. g–i reflected light. g: Detail from left of (d). h, i: Detail from right of (f). Scale bars 5 mm in (a–f), 1 mm in (g–i).
Text-fig. 2. Tectocarya spp. a–n: Tectocarya grandis (E.REID et M.CHANDLER) comb. n. Holotype V.22968. a: Lateral view of broken endocarp, reflected light. b–d: Longitudinal views, surface renderings from micro-CT data. e: Translucent volume renderings. f: Apical view, surface rendering. g: View of transversely broken surface showing curved locule, reflected light. h–n: Successive digital transverse sections. Note septum in the dorsal infold (arrows). o, p: Tectocarya rhenana KIRCHH., Miocene of Germany, dorsal view and transverse section [Holotype of Mastixoidea tectocaryoides KIRCHH., Alfred Mine near Konzendorf, photo by Dieter Mai] (Synonym of T. rhenana MAI, 1993). q: T. rhenana transverse section. from Mine Alfred, Düren, Germany, coll. Claire A. Brown 1952, USNM 355632. r, s: Tectocarya sp. from late Eocene of Post, Oregon, USA, physical transverse section, reflected light. UF279-50014. [Surface views of same specimen shown in Manchester and McIntosh 2007: figs 62, 63]. Scale bars 1 cm in (a–r), 0.5 cm in (s). in Mastixioid Fruits (Cornales) From The Early Eocene London Clay Flora: Morphology, Anatomy And Nomenclatural Revision
Text-fig. 2. Tectocarya spp. a–n: Tectocarya grandis (E.REID et M.CHANDLER) comb. n. Holotype V.22968. a: Lateral view of broken endocarp, reflected light. b–d: Longitudinal views, surface renderings from micro-CT data. e: Translucent volume renderings. f: Apical view, surface rendering. g: View of transversely broken surface showing curved locule, reflected light. h–n: Successive digital transverse sections. Note septum in the dorsal infold (arrows). o, p: Tectocarya rhenana KIRCHH., Miocene of Germany, dorsal view and transverse section [Holotype of Mastixoidea tectocaryoides KIRCHH., Alfred Mine near Konzendorf, photo by Dieter Mai] (Synonym of T. rhenana MAI, 1993). q: T. rhenana transverse section. from Mine Alfred, Düren, Germany, coll. Claire A. Brown 1952, USNM 355632. r, s: Tectocarya sp. from late Eocene of Post, Oregon, USA, physical transverse section, reflected light. UF279-50014. [Surface views of same specimen shown in Manchester and McIntosh 2007: figs 62, 63]. Scale bars 1 cm in (a–r), 0.5 cm in (s).
Text-fig. 4. Type specimens of Magnolia allasoniae MARTINETTO sp. nov. from the Pliocene locality Ca' Viettone. a1–a4: Holotype (MGPT-PU141081) in different views, i.e., as originally figured in Martinetto (1995: pl. 1, fig. 5) in a black and white print (a1), in a new digital photograph in basal view (a2), ventral view (a3) and dorsal view (a4); b1–b4: Paratype MGPT-PU141082 in different views, i.e., as originally figured in Martinetto (1995: pl. 1, fig. 4) in a black and white print (b1), in a new digital photograph in basal view (b2), ventral view (b3) and dorsal view (b4); c1–c4: Paratype MGPT-PU141083 in different views, i.e., as originally figured in Martinetto (1995: pl. 1, fig. 6) in a black and white print (c1), in a new digital photograph in basal view (c2), ventral view (c3) and dorsal view (c4); d1–d4: Paratype MGPT-PU141084 in different views, i.e., as originally figured in Martinetto (1995: pl. 1, fig. 7) in a black and white print (d1), in a new digital photograph in basal view (d2), ventral view (d3) and internal view (d4). Scale bars 1 mm. in Late Messinian Flora From The Post-Evaporitic Deposits Of The Piedmont Basin (Northwest Italy)
Text-fig. 4. Type specimens of Magnolia allasoniae MARTINETTO sp. nov. from the Pliocene locality Ca' Viettone. a1–a4: Holotype (MGPT-PU141081) in different views, i.e., as originally figured in Martinetto (1995: pl. 1, fig. 5) in a black and white print (a1), in a new digital photograph in basal view (a2), ventral view (a3) and dorsal view (a4); b1–b4: Paratype MGPT-PU141082 in different views, i.e., as originally figured in Martinetto (1995: pl. 1, fig. 4) in a black and white print (b1), in a new digital photograph in basal view (b2), ventral view (b3) and dorsal view (b4); c1–c4: Paratype MGPT-PU141083 in different views, i.e., as originally figured in Martinetto (1995: pl. 1, fig. 6) in a black and white print (c1), in a new digital photograph in basal view (c2), ventral view (c3) and dorsal view (c4); d1–d4: Paratype MGPT-PU141084 in different views, i.e., as originally figured in Martinetto (1995: pl. 1, fig. 7) in a black and white print (d1), in a new digital photograph in basal view (d2), ventral view (d3) and internal view (d4). Scale bars 1 mm.
Text-fig. 3. Mastixia parva E.REID et M.CHANDLER. a–g: Holotype, V. 22972. a: Ventral view (original illustration from pl. 25, fig. 13 of Reid and Chandler 1933), reflected light. b–g: from micro-CT data. b: Dorsal view of specimen in (a) now suffering from encrustation due to pyrite decay; isosurface rendering. c: Translucent volume rendering, dorsal view showing two limbs of the locule and longitudinal groove. d–g: Digital transverse sections at various positions showing c-shaped locule, longitudinal dorsal infold, endocarp wall, and degradational cracks. h, i: V. 22983(1). h: Dorsal view showing longitudinal infold. i: Physical transverse section showing c-shaped locule and longitudinal dorsal infold. Scale bars 5 mm in (a–h), applies also to (b–g), 2 mm in (i). in Mastixioid Fruits (Cornales) From The Early Eocene London Clay Flora: Morphology, Anatomy And Nomenclatural Revision
Text-fig. 3. Mastixia parva E.REID et M.CHANDLER. a–g: Holotype, V. 22972. a: Ventral view (original illustration from pl. 25, fig. 13 of Reid and Chandler 1933), reflected light. b–g: from micro-CT data. b: Dorsal view of specimen in (a) now suffering from encrustation due to pyrite decay; isosurface rendering. c: Translucent volume rendering, dorsal view showing two limbs of the locule and longitudinal groove. d–g: Digital transverse sections at various positions showing c-shaped locule, longitudinal dorsal infold, endocarp wall, and degradational cracks. h, i: V. 22983(1). h: Dorsal view showing longitudinal infold. i: Physical transverse section showing c-shaped locule and longitudinal dorsal infold. Scale bars 5 mm in (a–h), applies also to (b–g), 2 mm in (i).
Dataset for "Applicability of Control Materials To Support Gene Promoter Characterization and Expression in Engineered Cells Using Digital PCR"
<p>This dataset constitutes the pre-processed data contained in the publication 'Applicability of Control Materials To Support Gene Promoter Characterization and Expression in Engineered Cells Using Digital PCR' Analytical Chemistry (2022) 94(14):5566-5574 (DOI: 10.1021/acs.analchem.1c05134).</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.