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279 results for “historical biogeography”
Data from: Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica
We present the first phylogenomic analysis of relationships among all ten families of Liliales, based on 75 plastid genes from 35 species in 29 genera, and 97 additional plastomes stratified across angiosperm lineages. We used a supermatrix approach to extend our analysis to 58 of 64 genera of Liliales, and calibrated the resulting phylogeny against 17 fossil dates to produce a new timeline for monocot evolution. Liliales diverged from other monocots 124 Mya and began splitting into separate families 113 Mya. Our data support an Australian origin for Liliales, with close relationships between three pairs of lineages (Corsiaceae/Campynemataceae, Philesiaceae/Ripogonaceae, tribes Alstroemerieae/Luzuriageae) in South America and Australia or New Zealand reflecting teleconnections of these areas via Antarctica. Long-distance dispersal (LDD) across the Pacific and Tasman Sea led to re-invasion of New Zealand by two lineages (Luzuriaga, Ripogonum); LDD allowed Campynemanthe to colonize New Caledonia after its submergence until 37 Mya. LDD permitted Colchicaceae to invade East Asia and Africa from Australia, and re-invade Africa from Australia. Periodic desert greening permitted Gloriosa and Iphigenia to colonize Southeast Asia overland from Africa, and Androcymbium–Colchicum to invade the Mediterranean from South Africa. Melanthiaceae and Liliaceae crossed the Bering land-bridge several times from the Miocene to the Pleistocene.
Data from: Do the historical biogeography and evolutionary history of the digenean Margotrema spp. across central Mexico mirror those of their freshwater fish hosts (Goodeinae)?
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Data from: Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica
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Fig. 16 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)
Fig. 16. Apodrosus adustus. (A) habitus, dorsal view; (B) head, frontal view; (C) habitus, lateral view; (D) habitus, ventral view; (E) and (F) aedeagus in dorsal and lateral view, respectively; (G) spermatheca. This figure is published in colour in the online version of this journal, which can be accessed via http:// www.brill/ise
Fig. 11 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)
Fig. 11. Apodrosus argentatus. (A) habitus, dorsal view; (B) head, frontal view; (C) habitus, lateral view; (D) habitus, ventral view; (E) and (F) aedeagus in dorsal and lateral view, respectively; (G) spermatheca. This figure is published in colour in the online version of this journal, which can be accessed via http:// www.brill/ise
Fig. 9 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)
Fig. 9. Apodrosus epipolevatus. (A) habitus, dorsal view; (B) head, frontal view; (C) habitus, lateral view; (D) habitus, ventral view; (E) and (F) aedeagus in dorsal and lateral view, respectively; (G) spermatheca. This figure is published in colour in the online version of this journal, which can be accessed via http:// www.brill/ise
Fig. 4 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)
Fig. 4. Apodrosus wolcotti, male terminalia. (A) tergum VII; (B) tergum VIII; (C) sternum VIII, with spiculum relictum; (D) spiculum gastrale; (E) tegmen; (F) and (G) aedeagus in dorsal and lateral view, respectively.
Fig. 1 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)
Fig. 1. Apodrosus wolcotti, habitus of female. (A) dorsal view; (B) head, frontal view; (C) lateral view; (D) ventral view. This figure is published in colour in the online version of this journal, which can be accessed via http://www.brill/ise
Figure 7 in Systematic revision of the early Miocene fossil Pseudoepicrates (Serpentes: Boidae): implications for the evolution and historical biogeography of the West Indian boid snakes (Chilabothrus)
Figure 7. Close up of the zygosphene of different boine vertebrae. Note the differences between the median lobe and lateral lobe of the specimens. A, mid-precloacal vertebra of Chilabothrus angulifer (AMNH 77596); B, Chilabothrus inornatus (MCZ 2341); C, mid-precloacal vertebra of 'barbouri' (= P. stanolseni) material (MCZ 1978); D, mid-precloacal vertebra of P. stanolseni (MCZ 2417); E, mid-precloacal vertebra of Epicrates cenchria (MCN PV DR 002); and F, mid-precloacal vertebra of Epicrates crassus (MCN PV DR 003). Abbreviations are given in the relevant section. Scale bar: 2 mm.
Figure 8 in Systematic revision of the early Miocene fossil Pseudoepicrates (Serpentes: Boidae): implications for the evolution and historical biogeography of the West Indian boid snakes (Chilabothrus)
Figure 8. Specimens of Thomas Farm compared with the extant Boa constrictor. Note differences concerning the zygosphene roof and the neural spine morphology. All vertebrae are in dorsal view. A, midtrunk vertebra of 'barbouri' MCZ 1978; B, midtrunk vertebra of B. constrictor MCN. D. 344; C, midtrunk vertebra of P. stanolseni MCZ 2417; D, anterior vertebra paratype of P. stanolseni MCZ 1977; E, anterior vertebra of B. constrictor; F, midtrunk paratype vertebra of P. stanolseni MCZ 1977; G, midtrunk vertebra of P. stanolseni AMNH 7627. Abbreviations are given in the relevant section. Scale bar: 5 mm.
Fig. 2 in Historical biogeography and mitogenomics of two endemic Mediterranean gorgonians (Holaxonia, Plexauridae)
Fig. 2 Phylogenetic relationships, divergence times and ancestral area reconstructions of the genus Paramuricea. The tree is a chronogram inferred using a strict molecular clock and conservative mutation rate (0.14% per million year) based on a BEAST Markov chain Monte Carlo (MCMC) analysis. Numbers above and below the nodes represent posterior probability (PP) and bootstrap (BP) values, respectively. Dashed lines indicate branches which lead to nodes with PP <0.95 and BP <70. Roman numbers indicate the three main groups within the genus Paramuricea. The Eastern Atlantic and Mediterranean species analysed in this study are shown in bold. The pie charts indicate the ancestral area
Fig. 3 in Historical biogeography of tits (Aves: Paridae, Remizidae)
Fig. 3 Molecular phylogeny of Paroidea (tits and penduline tits) as in Fig. 2, but with ancestral-area reconstructions according to Lagrange and WAAA (in this order if different) indicated at the nodes
Figure 7 in Comparative morphology, phylogenetic relationships, and historical biogeography of plesiolebiasine seasonal killifishes (Teleostei: Cyprinodontiformes: Rivulidae)
Figure 7. Most parsimonious tree from the analysis of 142 morphological characters of plesiolebiasines and outgroup taxa. Numbers above the base of a node are bootstrap percentages higher than 50%. Letters in parentheses after plesiolebiasine species are areas of endemism: A, Parnaíba; B, Tocantins; C, Canabrava; D, Araguaia; E, Xingu; F, Paranaíba; G, eastern Paraguay; H, western Paraguay.
Figure 5 in Comparative morphology, phylogenetic relationships, and historical biogeography of plesiolebiasine seasonal killifishes (Teleostei: Cyprinodontiformes: Rivulidae)
Figure 5. External morphology: A, Plesiolebias canabravensis, male holotype, 17.6 mm SL (standard length) (UFRJ 6424); B, Plesiolebias filamentosus, male, about 20 mm SL (not preserved); C, Maratecoara lacortei, male, 28.8 mm SL (UFRJ 6406); D, Pituna compacta, male, 39.7 mm SL (UFRJ 6391); E, head of same individual as in (A); F, head of same individual as in (C); G, Pituna poranga, female, 28.0 mm SL (UFRJ 6395). Numbers in brackets are characters and character states, numbered according to Appendix S2.
Figure 3. Bayesian inference tree inferred from Dataset5 in First molecular phylogeny of the freshwater planarian genus Girardia (Platyhelminthes: Tricladida) unveils hidden taxonomic diversity and initiates resolution of its historical biogeography
Figure 3. Bayesian inference tree inferred from Dataset5 (concatenated no outgroup). Different groups indicated by letters and colours. A, schematic representation of the tree with collapsed clades (triangles) and singletons (rectangles) showing species identifications, when available, and countries of origin of the various terminals. The relationships between groups
Figure 5 in Multilocus phylogeny and historical biogeography of the Crematogaster inflata-group (Hymenoptera: Formicidae) in South-East Asia
Figure 5. Evolution of antennal club (A), propodeal inflation (B), propodeal spines (C) and metapleural gland opening (D) in the Crematogaster inflata-group. Ancestral state reconstructions as estimated with corHMM under the ER model. Pie charts represent ancestral reconstructions of number of antennal club, inflation of propodeum, propodeal spines and metapleural gland opening.
Figure 2 in Multilocus phylogeny and historical biogeography of the Crematogaster inflata-group (Hymenoptera: Formicidae) in South-East Asia
Figure 2. Maximum likelihood (ML) phylogeny for 38 taxa using six nuclear (ArgK, CAD, EF1αF1, LWRh, Top1, Wg) and two mitochondrial (12S, COI) genes in an IQ-TREE analysis. Values at each node are bootstrap value of the IQ-TREE analysis and posterior probability of the MRBAYES analysis, respectively; '–' indicates that this node is not found in the MRBAYES topology. Data were partitioned by PARTITIONFINDER and analysed using a best fit model for each gene and codon position. Inset, Crematogaster inflata specimen in profile view.
Figure 3 in Multilocus phylogeny and historical biogeography of the Crematogaster inflata-group (Hymenoptera: Formicidae) in South-East Asia
Figure 3. Phylogenetic relationships and species groups within the Crematogaster inflata-group from maximum likelihood (ML) and Bayesian (BI) analyses. Bootstrap value and posterior probability are shown at each node.
Fig. 3 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)
Fig. 3. Apodrosus wolcotti; (A) metendosternite, posterior view; (B) left wing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.