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FIGURE 21 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 21. Holotype of Atraphaxis ledebourii sp. nov. RUSSIA. Tuva: Tes-Khem Raion, the southern slope of the East Tannu-Ola ridge, dry stone bed of the Khyralyg-Khem river, 1200 m, 03 June 1972, Khanminchun 4821 (holotype MW0061283).
FIGURE 15 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 15. Atraphaxis decipiens (A–F, I–L) and A. pungens × A. decipiens (G–H): leaf blades (A, G), fragment of thyrse (B, I, J), flowers (C, D, K), fruits (D–F, H), and styles (E, L). A–F—(310) RUSSIA. Tuva: Ulug-Khem Raion, Khayyrakan vill., steppe, 01 August 2015, Kostikov & Kostikova (MW). G–H—(309) RUSSIA. Tuva: Barun-Khemchik Raion, Shekpeer vill., 03 August 2015, Kostikov & Kostikova (MW). I–L—RUSSIA. Tuva: Kyzyl Raion, Kara-Khaak vill., 28 July 2015, Kostikov & Kostikova (MW). Scale Bar: = 1 µm (A, B, G, I, K); = 0.5 µm (C, D, F, H, J); = 0.2 µm (E, L).
FIGURE 9 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 9. Atraphaxis pungens (A–E) and A. × uyukensis (F): A–C—short generative shoots with small leaf blades; D–F—long vegetative shoots with large leaf blades. A—(184) RUSSIA. Tuva: Pii-Khem Raion, Kartushibinskii ridge, vill. Shivilig, 16 June 1987, Shaulo & Krasnikov 84 (NSK). B—RUSSIA. Tuva: the West Sayan, Kartushibinskii ridge, environs of Semiozersk Slaughterhouse, 13 June 1980, Shaulo & Danilov 3867 (NSK). C—(304) RUSSIA. Tuva: Pii-Khem Raion, vicinity of Shivilig vill., 923 m, 52°13.434'N, 93°44.148'E, 26 Jul 2015, Kostikov & Kostikova (MW). D—(253) RUSSIA. Khakassia: Shira Raion, lake shore Fyrkal, 05 July 2014, Kostikov & Kostikova (NSK). E—(115) MONGOLIA. Uver-Khangay: S of Tugrek, Bajangyin-Nuru (spurs of Dzegest-Ula), 27 July 1983, Gubanov 7471 (MW). F—(301) RUSSIA. Tuva: Kyzyl Raion, Kara-Khaak vill., 655 m, 27 July 2015, Kostikov & Kostikova (MW).
FIGURE 6 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 6. Epidermal cells of perianth tube (A, C, E), tepals of perianth (B, D, F), fruits (G, L), styles (H, J, K), and fruit surface (I). A, B—A. kuvaevii (154), RUSSIA. Krasnoyarskii Krai: Kuvaev & Sonnikova 1015-13 (MW0061320, holotype). C, D—A. pungens (255), RUSSIA. Khakassia: Askiz Raion, Kazanovka, Skvortsov (MW0061302). E, F, K—A. ledebourii (59), MONGOLIA. Ubsunur: S of Altan-Els, 70 km NE of Baruun-Turuun, 5 July 1988, Kamelin et al. 867 (LE). G–I—A. kuvaevii, RUSSIA, Tuva: Ulug-Khem Raion, West Sayan Mts, vill. Bayan-Kol, 8 July 1974, Lomonosova & Iskakova 2709 (MHA, NS). J—A. pungens (192), RUSSIA. Tuva: West Sayan, Kartushibinskii ridge, Semiozersk Slaughterhouse, 13 June 1980, Shaulo & Danilov 3867 (MHA). L—A. decipiens × A. ledebourii (238), RUSSIA. Tuva: Ulug-Khem Raion, West Sayan Mts, the Uyuk ridge, vill. Bayan-Kol, 6 August 1976, Lomonosova & Ivanova 2408 (MHA). Scale Bar = 10 µm (A-F); = 300 µm (G), =100 µm (H); = 30 µm (I); =500 µm (J); =3 µm (K, L).
FIGURE 20 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 20. Atraphaxis ledebourii (298) RUSSIA. Tuva: Erzin Raion, 17 km N from the vill. Erzin, river bank Tarlashkyn, rocky outcrops and rocks, 1098 m, 50°22.992N, 95°05E.116, 29 July 2015, Kostikov & Kostikova (MW). A—leaf blade. B, C—perianth. D–F—styles in unripe (D, E) and ripe (F) fruit. Scale Bar: = 1 µm (A–C, D); = 0.5 µm (E); = 0.2 µm (F).
FIGURE 1 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 1. Maximum likelihood tree of Atraphaxis inferred from the combined chloroplast data set (trnL(UAA) intron + trnL-trnF IGS and rpl32-trnL(UAG) IGS) of Atraphaxis with Bactria ovczinnikovii as outgroup. Numbers above or below branches indicate aBayes support values (aB) equal or more than 0.7 and the posterior probabilities from Bayesian analysis (PP), equal or more than 0.9, respectively. The names of subclades are in the text.
FIGURE 3 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 3. Maximum likelihood tree of Atraphaxis inferred from nuclear ribosomal DNA ITS1–2 regions, aligned according to the prerRNA secondary structure of the ITS1 and ITS2 loci. Numbers above or below indicate aBayes support values (aB) equal or more than 0.7 and the posterior probabilities from Bayesian analysis (PP), equal or more than 0.9, respectively. The names of ribotypes see in the text.
FIGURE 12 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 12. Atraphaxis pungens (M.Bieb.) Jaub. & Spach.: leaf blades of short (A–B) and long (C) shoots, flowers (D–F, H–I), styles (G), and fruits (J–L). A, D—(192) RUSSIA. Tuva: the West Sayan, Kartushibinskii ridge, Semiozersk Slaughterhouse, 13 June 1980, Shaulo & Danilov 3845 (MHA). B, E–G—the same, 3867 (NSK). C, H, K, L—(303) RUSSIA. Tuva: Ordzhonikidze Raion, Iyus vill., Mt Sunduk, 05 July 2014, Kostikov & Kostikova (MW). I, J—(304) RUSSIA. Tuva, Pii-Khem Raion, Shivilig vill., 26 July 2015, Kostikov & Kostikova (MW). Scale Bar = 1 µm (A, B, I); = 2 µm (C, H), = 0.2 µm (D, G, L); = 0.5 µm (E, F, J, K).
FIGURE 8 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 8. Distributional map of Atraphaxis species in RUSSIA: Tuva, based on plastid haplotypes: 1—A. pungens. 2—A. ledebourii. 3—A. × uyukensis. 4—A. decipiens. 5—A. decipiens × A. pungens. 6—A. kuvaevii. 7—A. decipiens × A. ledebourii.
FIGURE 5 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 5. Atraphaxis kuvaevii Yurtseva sp. nov.: leaf blades (A), perianth (B, C), styles (D, E), and fruit (F). A, E–F—(154) RUSSIA. Krasnoyarskii Krai: the West Sayan, Sayano-Shushensky Nature Reserve, left board of the Sayano-Shushenskii water reservoir, above the Kalbakmys river, stony mountain steppe, 615 m, 3 July 1987, Kuvaev & Sonnikova 1015-13 (MW0061320— holotypus). B–D—(155) RUSSIA. Krasnoyarskii Krai, the West Sayan, Sayano-Shushensky Nature Reserve, Taldy-Chaz stream, 3 July 1987. Kuvaev & Sonnikova 1013-6 (MW0061321). Scale bar = 1 mm (A–C); = 0.5 mm (D–F).
FIGURE 19 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 19. Atraphaxis decipiens × A. ledebourii (238) RUSSIA. Tuva: Ulug-Khem Raion, the Uyuk ridge, Bayan-Kol ferry, 6 August 1976, Lomonosova & Ivanova 2408 (MHA). A—leaf blade. B—fragment of a thyrse. C—perianth. D—fruit. E—styles on unripe fruit. F—styles on ripe fruit. Scale Bar: = 1 µm (A–C, D); = 0.5 µm (E); = 0.2 µm (F).
FIGURE 18 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 18. Atraphaxis decipiens × A. ledebourii (A–E) and A. ledebourii × A. decipiens (F). A, B, C—(238) RUSSIA. Tuva: Ulug-Khem Raion, the Uyuk ridge, Bayan-Kol ferry, 6 Aug 1976, Lomonosova & Ivanova 2408 (MHA). D—(254) RUSSIA. Tuva: Erzin Raion, Naryn, 12 July 1972, Krasnoborov & Kosinets 3662 (LE). E—(306) RUSSIA. Tuva: Ulug-Khem Raion, the Senek river, 25 June 1977, Neifeld & Margasova (MHA). F—(246) RUSSIA. Tuva: Ulug-Khem Raion, N of Seserlig vill., 30 July 1974, Lomonosova & Kurlaev 2956 (MHA).
FIGURE 4 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 4. Holotype of Atraphaxis kuvaevii Yurtseva sp. nov.: RUSSIA. Krasnoyarskii Krai: the West Sayan, Sayano-Shushensky Nature Reserve, left board of the Sayano-Shushenskii water reservoir, above the Kalbakmys river, stony mountain steppe, 615 m, 3 July 1987, Kuvaev & Sonnikova 1015-13 (holotype MW0061320)
FIGURE 14 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 14. Atraphaxis × uyukensis Yurtseva nom. provis.: leaf blade (A), perianth in fruiting (B), fruit (C). styles in young flower (D, E, F). A–C—(301) RUSSIA. Tuva: Kyzyl Raion, Kara-Khaak vill., 27 July 2015, Kostikov & Kostikova (MW). D–G—(241) RUSSIA. Tuva: Kyzyl Raion, the Uyuk ridge, the right bank of the Big Yenisey opposite Kara-Khaak vill., 1 June 2013, Doronkin T 212 (NSK). H, I—(311) RUSSIA. Tuva: Pii-Khem Raion, mouth of the Uyuk river, 31 May 1988, Shaulo & Shaulo 11 / 560 (NSK) Scale Bar: = 2 µm (A); =1 µm (B, D–F, H); = 0.2 µm (C, G, I).
FIGURE 11. A in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 11. A. × uyukensis Yurtseva, nom. provis. A, D—(241) RUSSIA. Tuva: Kyzyl Raion, spurs of the Uyuk ridge, the right bank of the Big-Khem (Big Yenisey) river above the mouth of the Seserlig river, opposite the vill. Kara-Khaak. nanophyton steppe, 600 m, 51°54'14''N, 94°25'30"E, 1 June 2013, Doronkin. T 212 (NSK). B, E—(311) RUSSIA. Tuva: Pii-Khem Raion, the West Sayan, mouth of the Uyuk river, rocks, 52°07'N, 94°20'E, 31 May 1988, Shaulo & Shulo NS-11 / 560 (NSK). C, D—RUSSIA. Tuva: Pii-Khem Raion, the West Sayan, the Uyuk ridge, mouth of the Uyuk river, 9 August 1986, Shaulo & Zhdanova 312 (NSK).
FIGURE 17 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 17. Atraphaxis pungens × A. decipiens (A–C) and A. decipiens × A. pungens (D–F): leaf blades (A, B, D), fruit (C), and flowers (E, F). A–C—(302) RUSSIA. Tuva, Barun-Khemchik Raion, Shekpeer vill. 03 Aug 2015. Kostikov & Kostikova (MW). D–F—(307) RUSSIA: Tuva, Kyzyl Raion, Kara-Khaak vill. 27 July 2015. Kostikov & Kostikova (MW). Scale Bar: = 2 µm (A, B); = 1 µm (D–F); = 0.5 µm (C).
FIGURE 13 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 13. Atraphaxis ledebourii Yurtseva sp. nov.: leaf blades at short shoots (A) and long shoots (B), flowers (C, G), styles (D, E, H), and fruits (F, I). A—(233) RUSSIA. Altai Rep.: Kosh-Agach Raion, the Chuya river, 5 km above the mouth of the Chagan-Uzun river, 23 July 1995, Kamelin (LE). B–F—(234) RUSSIA. Altai Rep.: Kosh-Agach Raion, the Kyzylshin river above Kokorya vill., 19 August 2000, Kamelin et al. 2227 (ALTB). G, H—(300) RUSSIA. Altai Rep.: Onguday Raion, between the vill. Kupchegen and Inya, 8 July 2015, Kostikov & Kostikova (NSK). I—(296) RUSSIA. Tuva: Chaa-Khol' Raion, Sayano-Shushenskii reservoir, steppe slope, 12 Jul 2014, Kostikov & Kostikova (MW). Scale Bar: = 1 µm (A, C, G, F); = 2 µm (B), = 0.2 µm (D, H); = 0.5 µm (E, I).
FIGURE 2 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 2. Distributional map of Atraphaxis species in Southern Siberia based on plastid haplotypes: 1—A. pungens. 2—A. ledebourii. 3—A. × uyukensis. 4—A. davurica. 5—A. decipiens. 6—A. decipiens × A. pungens. 7—A. frutescens. 8—A. kuvaevii. 9—A. decipiens × A. ledebourii. 10—A.selengensis.
FIGURE 16 in A broadly sampled 3-loci plastid phylogeny of Atraphaxis (Polygoneae, Polygonoideae, Polygonaceae) reveals new taxa: III. A. kuvaevii and сryptic species in A. pungens from Southern Siberia and Northern Mongolia
FIGURE 16. Atraphaxis decipiens (A, B, G), A. pungens × A. decipiens (C, D), A. pungens (E, F), and A. decipiens × A. pungens (H–I). A—(310) A. decipiens, RUSSIA. Tuva: Ulug-Khem Raion, Khayyrakan vill., 01 August 2015, Kostikov & Kostikova (MW). B—(312) A. decipiens, RUSSIA. Tuva: Pii-Khem Raion, the Uyuk ridge, the steep bank of the Yenisey River, 09 July 2014, Kostikov & Kostikova (NSK). C–D—(309) A. pungens × A. decipiens, RUSSIA. Tuva: Barun-Khemchik Raion, Shekpeer vill., 03 August 2015, Kostikov & Kostikova (MW). E–F—(302) A. pungens × A. decipiens, idem (MW). G—A. decipiens, RUSSIA. Tuva: Kyzyl Raion, Kara-Khaak vill., 28 July 2015, Kostikov & Kostikova (MW). H, I—(307) A. decipiens × A. pungens, RUSSIA. Tuva: Kyzyl Raion, Kara-Khaak vill., 27 July 2015, Kostikov &. Kostikova (MW).
Developing Asparagaceae1726: an Asparagaceae-specific probe set targeting 1,726 loci for Hyb-Seq and phylogenomics in the family
<p>Dataset associated with the release of Asparagaceae1726: a Hyb-Seq probe set targeting 1726 conserved, low-copy nuclear genes specifically for phylogenomics in the angiosperm family Asparagaceae. Phylogenomic analysis of this number of genes could aid the often-challenging delineation of taxa and resolution of relationships within Asparagaceae.</p> <p>Asparagaceae1726 is a first attempt at establishing a standardized set of loci for phylogenomic analysis in Asparagaceae, which we hope will be widely used for extensible and reproducible investigations of diversification in the family.</p>
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