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3,109 results for “sequence analysis”
Data from: SNP discovery and high resolution melting analysis from massive transcriptome sequencing in the California red abalone Haliotis rufescens
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Data from: Estimation of a killer whale (Orcinus orca) population’s diet using sequencing analysis of DNA from feces
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Data from: Phylogeny of Mycoplasma bovis isolates from Hungary based on multi locus sequence typing and multiple-locus variable-number tandem repeat analysis
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Data from: Extracting spatio-temporal patterns in animal trajectories: an ecological application of sequence analysis methods
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Data & Analysis for: Soil microbiome sequencing reveals pathogen accumulation and nutrient cycle changes, but not mycorrhizal suppression in naturally occurring invasion of garlic mustard
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Data from: Are Miquihuana rhadiniformis Barr, 1982 and Pseudamara arenaria (LeConte, 1847) (Coleoptera, Carabidae) sphodrines? Phylogenetic analysis of data from next-generation sequencing of museum specimens resolves the tribal-group relationships of these enigmatic taxa
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Data from: Extending RAD tag analysis to microbial ecology: a comparison between multi locus sequence typing (MLST) and 2b-RAD to investigate Listeria monocytogenes genetic structure
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Data from: Whole genome sequencing and phylogenomic analysis show support for the splitting of genus Pythium
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Data from: A pragmatic approach to the analysis of diets of generalist predators: the use of next-generation sequencing with no blocking probes
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Data from: Analysis of transposable elements in the genome of Asparagus officinalis from high coverage sequence data
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cDNA sequence of E2 gene family in Arabidopsis thaliana and data of statistical analysis
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Data from: Whole genome sequencing and rare variant analysis in essential tremor families
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Raw sequence of: A comparative analysis of spider prey spectra analyzed through the next-generation sequencing of individual and mixed DNA samples
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Phylogenetic analysis of 218 protein sequences that bear sequence similarity to F. prausnitzii FAAH
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Data for morphometric analysis and DNA barcode sequence for the new fish species Polymixia hollisterae
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Shear wave splitting measurements used in "Spatio-temporal Analysis of Seismic Anisotropy Associated with the Cook Strait and Kaikoura Earthquake Sequences in New Zealand"
<p>Shear wave splitting measurement used in "Spatio-temporal Analysis of Seismic Anisotropy Associated with the Cook Strait and Kaikoura Earthquake Sequences in New Zealand" is included here. This CSV and XLSX file are part of a paper submitted to GJI in April 2020. A detailed description of the column headers can be found in the MFAST manual, in table 4, at http://mfast-package.geo.vuw.ac.nz/mfast_manual_v2.2.pdf</p>
Sequence Data for Templated Mutagenesis Analysis
<p>This repository contains the sequence data required for the analysis of templated mutagenesis.</p> <p>The sequences in the ebola folder are described in Bornholdt et al., "Isolation of potent neutralizing antibodies from a survivor of the 2014 Ebola virus outbreak" (dx.doi.org/10.1126/science.aad5788). The associated SRA accession numbers are listed in ebola/ebola_accessions_heavy.txt.</p> <p>The sequences in the yeap folder are described in Yeap et al., "Sequence-Intrinsic Mechanisms that Target AID<br> Mutational Outcomes on Antibody Genes" (http://dx.doi.org/10.1016/j.cell.2015.10.042). The associated SRA accession numbers are listed in yeap/SRR_Acc_List_gpt.txt.</p> <p>The sequences in the reference_sets folder are derived from IMGT (http://www.imgt.org/vquest/refseqh.html) and Retter et al., "Sequence and Characterization of the Ig Heavy Chain Constant and Partial Variable Region of the Mouse Strain 129S1" (https://doi.org/10.4049/jimmunol.179.4.2419). More information about how the sequences were accessed and processed is available in reference_sets/README.md.</p>
Supplementary material 1 from: Hu C, Wang S, Huang B, Liu H, Xu L, Hu Z, Liu Y (2020) The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes. ZooKeys 925: 73-88. https://doi.org/10.3897/zookeys.925.47820
Table S1
Figure 2 from: Hu C, Wang S, Huang B, Liu H, Xu L, Hu Z, Liu Y (2020) The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes. ZooKeys 925: 73-88. https://doi.org/10.3897/zookeys.925.47820
Figure 2 Variation in length and base composition of each of the 13 core protein coding genes (PCGs) among eight centipedes' mitochondrial genomes A PCG length variation B GC content across PCGsC AT skew D GC skew.
Figure 4 from: Hu C, Wang S, Huang B, Liu H, Xu L, Hu Z, Liu Y (2020) The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes. ZooKeys 925: 73-88. https://doi.org/10.3897/zookeys.925.47820
Figure 4 A Molecular phylogeny of eight centipede species based on Maximum Likelihood inference analysis of 13 protein-coding genes (PCGs) B Traditional morphological classification based on the position of spiracles and the variation of larvae.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.