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SGS-LTER Standard Met Data: CR21x Station 12 - 15 minute preciptation values from LTER meteorological station on the Central Plains Experimental Range in Nunn, Colorado, USA 1986-1994, ARS Study Number 4
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/82449. The objective of this study is to collect baseline meteorological data for the CPER. Datasets auto12_climdb and man11_climdb have been processed for quality and missing values.
SGS-LTER Standard Met Data: CR21x Station 12 - 15 Minute Meteorological Data on the Central Plains Experimental Range in Nunn, Colorado, USA 1995-2010, ARS Study Number 4
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/82449. The objective of this study is to collect baseline meteorological data for the CPER. Datasets auto12_climdb and man11_climdb have been processed for quality and missing values.
SGS-LTER Historical LTER Soil water - neutron probe: field data (1984-1992) in Section 15, Sandy on the Central Plains Experimental Range, Nunn, Colorado, USA, ARS Study Number 10
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Long-term (1985-1992) dynamics and spatial variations in soil water below the evaporative zone were evaluated for a shortgrass steppe with a low and variable precipitation regime. Each of sandy loam, clay loam, and two sandy clay loam sites compromised a toposequence with upland, midslope, and lowland positions. Soil water was monitored at 15cm intervals providing estimates covering 22.5 to 97.5 cm depths. Soil water throughout the profile was highest in the clay loam and lowest in the sandy loam. However, stored soil water did not vary systematically among slope positions. Additional information and referenced materials can be found: http://hdl.handle.net/10217/82912
Cordia sp. from Colombia collected by L. Ramos, E. Álvarez, J. Cabezas, J. Rodriguez & C. Ibañez #15
<p><strong>File Name</strong>: <span>TOLI-24125-RAN-01-10-D-15.jpg</span></p> <p><strong>CÓDIGO FOTO</strong>: <span>TOLI-24125-RAN-01-10-D-15-</span></p> <p><strong>Fotografía</strong>: <span>SI</span></p> <p><strong>Nº TOLI</strong>: <span>TOLI-24125</span></p> <p><strong>PARCELA</strong>: <span>RAN-01</span></p> <p><strong>CÓDIGO</strong>: <span>10-D-15</span></p> <p><strong>Nº COLECTA</strong>: <span>15</span></p> <p><strong>NUEVOS COLECTORES</strong>: <span>Laura Isabel Ramos</span></p> <p><strong>COLECTORES</strong>: <span>L. Ramos, E. Álvarez, J. Cabezas, J. Rodriguez & C. Ibañez</span></p> <p><strong>Nº MUESTRAS MONTADAS</strong>: <span>1</span></p> <p><strong>Homologación</strong>: <span>No homologado</span></p> <p><strong>Nueva fecha del evento </strong>: <span>20/12/2018.</span></p> <p><strong>Fecha del evento</strong>: <span>27/11/2018.</span></p> <p><strong>Proyecto </strong>: <span>Recursos Botánicos Disponibles en Línea (BRAVO) para la flora Colombiana</span></p> <p><strong>Hábitat</strong>: <span>Bosque húmedo tropical (bh-T)</span></p> <p><strong>Continente</strong>: <span>SA</span></p> <p><strong>Pais</strong>: <span>Colombia</span></p> <p><strong>Estado/Provincia</strong>: <span>Meta</span></p> <p><strong>Municipio</strong>: <span>Puerto López</span></p> <p><strong>Centro poblado / Cabecera municipal</strong>: <span>La Serranía</span></p> <p><strong>Localidad</strong>: <span>Reserva Natural El Amparo</span></p> <p><strong>Elevación minima en metros</strong>: <span>200</span></p> <p><strong>Elevación maxima en metros</strong>: <span>250</span></p> <p><strong>Latitud</strong>: <span>4.020</span></p> <p><strong>Longitud original</strong>: <span>-72.600</span></p> <p><strong>datum geodésico</strong>: <span>WGS 84</span></p> <p><strong>Latitud decimal</strong>: <span>4.020</span></p> <p><strong>Longitud decimal</strong>: <span>-72.600</span></p> <p><strong>Identificado por</strong>: <span>Boris Villanueva</span></p> <p><strong>Familia antigua</strong>: <span>Boraginaceae</span></p> <p><strong>Especie antigua</strong>: <span>NN</span></p> <p><strong>Nombre cientifico</strong>: <span>Cordia sp.</span></p> <p><strong>Reino</strong>: <span>Plantae</span></p> <p><strong>Filo</strong>: <span>Magnoliophyta</span></p> <p><strong>Clase</strong>: <span>Equisetopsida</span></p> <p><strong>Orden</strong>: <span>Boraginales</span></p> <p><strong>Familia nueva</strong>: <span>Boraginaceae</span></p> <p><strong>Género nuevo</strong>: <span>Cordia</span></p> <p><strong>especie nueva</strong>: <span>sp.</span></p> <p><strong></strong>: <span>Boraginaceae</span></p> <p><strong>genero herbario</strong>: <span>Cordia</span></p> <p><strong>especie herbario</strong>: <span>sp.</span></p> <p><strong>Especie de herbario para TNRS</strong>: <span>Cordia sp.</span></p> <p><strong>Especie corregida herbario y desde TNRS</strong>: <span>Cordia indet</span></p> <p><strong>Familia corregida desde TNRS</strong>: <span>Boraginaceae</span></p> <p><strong></strong>: <span>3209</span></p>
Pouteria sp. from Colombia collected by W. López, J. Rodriguez, M. Salas #15
<p><strong>File Name</strong>: <span>TOLI-22842-AMA-02-B1-15.jpg</span></p> <p><strong>CÓDIGO FOTO</strong>: <span>TOLI-22842-AMA-02-B1-15-</span></p> <p><strong>Fotografía</strong>: <span>SI</span></p> <p><strong>Nº TOLI</strong>: <span>TOLI-22842</span></p> <p><strong>PARCELA</strong>: <span>AMA-02</span></p> <p><strong>CÓDIGO</strong>: <span>B1-15</span></p> <p><strong>Nº COLECTA</strong>: <span>15</span></p> <p><strong>NUEVOS COLECTORES</strong>: <span>Wilmar López Oviedo</span></p> <p><strong>COLECTORES</strong>: <span>W. López, J. Rodriguez, M. Salas</span></p> <p><strong>Nº MUESTRAS MONTADAS</strong>: <span>1</span></p> <p><strong>Homologación</strong>: <span>No homologado</span></p> <p><strong>Nueva fecha del evento </strong>: <span>27/11/2018.</span></p> <p><strong>Fecha del evento</strong>: <span>01/05/2012.</span></p> <p><strong>Proyecto </strong>: <span>Recursos Botánicos Disponibles en Línea (BRAVO) para la flora Colombiana</span></p> <p><strong>Hábitat</strong>: <span>Bosque muy húmedo tropical (bmh-T)</span></p> <p><strong>Comentario del evento</strong>: <span>Bosque de tierra firme</span></p> <p><strong>Continente</strong>: <span>SA</span></p> <p><strong>Pais</strong>: <span>Colombia</span></p> <p><strong>Estado/Provincia</strong>: <span>Chocó</span></p> <p><strong>Municipio</strong>: <span>Nuquí</span></p> <p><strong>Centro poblado / Cabecera municipal</strong>: <span>Arusí</span></p> <p><strong>Localidad</strong>: <span>Reserva Natural El Amargal</span></p> <p><strong>Elevación minima en metros</strong>: <span>50</span></p> <p><strong>Elevación maxima en metros</strong>: <span>300</span></p> <p><strong>Latitud</strong>: <span>5.578</span></p> <p><strong>Longitud original</strong>: <span>-77.500</span></p> <p><strong>datum geodésico</strong>: <span>WGS 84</span></p> <p><strong>Latitud decimal</strong>: <span>5.578</span></p> <p><strong>Longitud decimal</strong>: <span>-77.500</span></p> <p><strong>Identificado por</strong>: <span>Wilmar López</span></p> <p><strong>Fecha de identificación</strong>: <span>16/05/2019.</span></p> <p><strong>Familia antigua</strong>: <span>Sapotaceae</span></p> <p><strong>Especie antigua</strong>: <span>Pouteria sp.</span></p> <p><strong>Nombre cientifico</strong>: <span>Pouteria sp.</span></p> <p><strong>Reino</strong>: <span>Plantae</span></p> <p><strong>Filo</strong>: <span>Magnoliophyta</span></p> <p><strong>Clase</strong>: <span>Equisetopsida</span></p> <p><strong>Familia nueva</strong>: <span>Sapotaceae</span></p> <p><strong>genero herbario</strong>: <span>NN</span></p> <p><strong>Especie de herbario para TNRS</strong>: <span>NN </span></p> <p><strong>Especie corregida herbario y desde TNRS</strong>: <span>Indet indet</span></p> <p><strong>Familia corregida desde TNRS</strong>: <span>Sapotaceae</span></p> <p><strong></strong>: <span>1967</span></p> <p><strong>Sin nombre cientif</strong>: <span>1</span></p>
Annotated genes harboring major effect markers (R2 ≥ 15%). Highlighted in green are genes annotated from Rhodes et al. 2014,2017, in orange genes annotated as similar to Peroxidase, in yellow new annotations from sorghum genome in Atlas. In the first three columns start and stop position on the sorghum genome and transcript name, followed by the nearest marker name and the distance of the gene from the nearest marker, then a column where are shown the GWAS methods and target traits for which the linked SNP was significant, the last column shows the category of the genes.
<p><strong>We conducted a comprehensive genomics study to map genomic loci determining the production of antioxidants in sorghum grains. Encouraging results were obtained and published in peer-reviewed article with impact factor (https://doi.org/10.1371/journal.pone.0225979). Annotated genes harboring major effect markers (R<sup>2</sup> ≥ 15%) were identified and will be of worldwide interest. </strong></p>
'A posteriori' genes harboring major effect marker (R2 ≥ 15%)
<p>In The process of our comprehensive mapping of the genomic loci governing the production of antioxidants in sorghum, we identified a posteriori genes harboring major effect marker. All genes involved in polyphenols metabolic pathway were considered 'a priori' candidates, including those genes that were reported in previous works. Regardless of their annotation and putative function, all genes containing a significant marker within their sequence were considered 'a posteriori' candidates. <strong> </strong> </p>
Floristic monitoring of the 1,324 alignment tree bases of 15 streets in the district of Bercy, Paris, France, from 2009 to 2018
<p>Floristic monitoring of the 1,324 alignment tree bases of 15 streets in the district of Bercy, Paris, France, from 2009 to 2018.</p> <p>Nathalie Machon (CESCO, MNHN-CNRS-Sorbonne-Université)</p> <p>Data collectors : Noëlie Maurel, Marion Noualhaguet, Marion Dubois, Sébastien Julliard, Ambre Zéléla Bouvard, Paul Haenel, Florence Devers, Hélène Beaugeard, Gwendoline Chastel, laure Schneider-Maunoury and Mona Omar</p> <p>Centre d’Ecologie et des Sciences de la Conservation, Muséum national d’Histoire naturelle, 61 rue Buffon, 75005 Paris, nathalie.machon@mnhn.fr</p> <p>In cities, trees planted along streets host at their base a high number of spontaneous plants. Thus, they may provide shelters and corridors across the urban matrix.</p> <p>From 2009, we monitor urban tree bases in streets of Paris, France. Our objective is to follow the dynamics of these plant communities (Omar et al. 2018, 2019).</p> <p> </p> <p><strong>Study area and floristic inventories</strong></p> <p>The monitoring was performed in the 12th administrative district of Paris (Postal code: 75012; France; 48°50′26.91″N, 2°23′17.46″E),</p> <p>We monitored the 1,324 tree bases distributed along the 15 streets or avenues which contained at least 30 alignment trees in the district.</p> <p>Tree bases (TB) were for some of them covered by metal grills (grill/soil) to prevent soil compaction to preserve tree roots.</p> <p>The present file gives the list of all wild vascular plant taxa observed in each tree base, in May or June, each year from 2009 to 2018 except in 2013 because of a lack of observers. The taxonomic reference is the French Flora Reference TAXREF v8.0 (Gargominy et al., 2016).</p>
Fig. 15 in Diglotta mersa (Haliday) and Halobrecta flavipes Thomson, two new species for the Canadian fauna (Coleoptera, Staphylinidae, Aleocharinae)
Fig. 15. Halobrecta flavipes Th omson in dorsal view. Scale bar = 1 mm.
Figure 15 in DELTA for Beginners. An introduction into the taxonomy software package DELTA
Figure 15. Example of characters forming a group where certain text elements are repeated.
Fig. 15 in Two new genera and five new species of Selachinematidae (Nematoda, Chromadorida) from the continental slope of New Zealand
Fig. 15. Bendiella thalassa gen. et sp. nov. A. Entire male. B. Entire female. Scale bar = 50 μm.
Fig. 15 in Gladiopycnodontidae, a new family of pycnodontiform fishes from the Late Cretaceous of Lebanon, with the description of three genera
Fig. 15. Rostropycnodus gayeti gen. et sp. nov. Holotype CLC S-608a (above) and 608b (below).
Figure 15 in The Cymonomid Crabs of New Zealand and Australia (Crustacea: Brachyura: Cyclodorripoida)
Figure 15. Distribution of Cymonomus delli Griffin & Brown, 1976.
Fig. 15 in Taxonomic revision of the Afrotropical genus Megatrigon Johnson, 1898 (Diptera: Syrphidae)
Fig. 15. Megatrigon argenteus species group (subgroup 1), distribution.
Global ECMWF Fire Forecasting system - sample data for wildfires in Sweden on 15-20 July 2018
<p>The European Centre for Medium-Range Weather Forecasts (<a href="https://www.ecmwf.int/">ECMWF</a>) produces daily fire danger forecasts and reanalysis products from the Global ECMWF Fire Forecast (<a href="https://git.ecmwf.int//projects/CEMSF/repos/geff/browse">GEFF</a>) model. Reanalysis is available through the Copernicus Climate Data Store (<a href="https://cds.climate.copernicus.eu/cdsapp#%21/dataset/cems-fire-historical">CDS</a>) while the medium-range real-time forecast is available through the <a href="https://effis.jrc.ec.europa.eu/static/effis_current_situation/public/index.html">EFFIS</a> and <a href="https://gwis.jrc.ec.europa.eu/static/gwis_current_situation/public/index.html">GWIS</a> platforms.</p> <p>This repository provides FWI sample datasets for the assessment of the wildfires occurred in Sweden on 15-20 July 2018:</p> <ul> <li> <p>GEFF-reanalysis, which provides historical records of fire danger conditions</p> <ul> <li> <p>e5_hr, this folder contains deterministic model outputs</p> </li> <li> <p>e5_en, this folder contains probabilistic model outputs (made of 10 ensemble members)</p> </li> </ul> </li> <li> <p>GEFF-realtime provides real-time forecasts generated using weather forcings from the model cycle 45r1 of the ECMWF’s Integrated Forecasting System (IFS).</p> <ul> <li> <p>rt_hr, this folder contains high-resolution deterministic forecasts (~9 Km)</p> </li> <li> <p>rt_en, this folder contains probabilistic forecasts (~18Km)</p> </li> </ul> </li> <li> <p>Geographical bounding box: lon_min = 10.1, lon_max = 24.8, lat_min = 55, lat_max = 69</p> </li> </ul> <p><strong>Please note, the sample data provided in this repository is intended to be used for education purposes only (e.g. training courses).</strong></p> <p>These products have been developed as part of the EU-funded Copernicus Emergency Management Services (<a href="https://emergency.copernicus.eu/">CEMS</a>) and complement other Copernicus products related to fire, such as the biomass-burning emissions made available by the Copernicus Atmosphere Monitoring Service (<a href="https://atmosphere.copernicus.eu/">CAMS</a>). The development of the GEFF modelling system was funded through a third-party agreement with the European Commission’s Joint Research Centre (<a href="https://ec.europa.eu/info/departments/joint-research-centre_en">JRC</a>). </p> <p>GEFF produces fire danger indices based on the Canadian Fire Weather index as well as the US and Australian fire danger models. GEFF datasets are under the Copernicus license, which provides users with free, full and open access to environmental data.</p> <p>For more information, please refer to the documentation on the <a href="http://datastore.copernicus-climate.eu/c3s/published-forms/c3sprod/cems-fire-historical/Fire_In_CDS.pdf">CDS</a> and on the <a href="https://effis.jrc.ec.europa.eu/about-effis/technical-background/fire-danger-forecast/">EFFIS website</a>.</p>
Investigating evolution at the catalytic site of the main SARS-CoV-2 protease using over 15,000 genomes
<p>We investigated evolution and genomic variation of SARS-CoV-2 within the current pandemic at the catalytic site of the main SARS-CoV-2 protease (see https://zenodo.org/record/3834875#.Xs1IHsZ7nyk and <a href="https://openlabnotebooks.org/mapping-the-genetic-variations-of-sars-cov-2-onto-its-proteins-crystal-structures-post-1/">https://openlabnotebooks.org/mapping-the-genetic-variations-of-sars-cov-2-onto-its-proteins-crystal-structures-post-1/ </a>).<br> We used more than 15,000 genomic sequences from GISAID (<a href="https://www.epicov.org/">https://www.epicov.org/</a>) available on the 17th of May 2020.<br> We use a new approach based on phylogenetic inference of homoplasy, clustering of mutations, and ambiguous consensus sequence characters, to identify sites that are likely affected by sequencing artefacts.<br> We find that these sites are mostly conserved, and the amino acid variants observed are only M49I, P52S, N142S, and P168S, all of which appear only at extremely low frequencies (maximum of two samples each).</p>
FIG. 15 in Annotated checklist of the springtails (Hexapoda: Collembola) of the Collo massif, northeastern Algeria
FIG. 15. — Proctostephanus sanctiaugustini Cassagnau, 1963. Body size:
FIG. 15 in Annotated checklist of the springtails (Hexapoda: Collembola) of the Collo massif, northeastern Algeria
FIG. 15. — Proctostephanus sanctiaugustini Cassagnau, 1963. Body size: 1.0 mm.
Datasets from Water Research (2021) Volume 190, 15 February 2021, 116748
<p>The dataset contains the raw data of the figures and tables reported in the open access publication " Ceballos-Escalera, A., Pous, N., Chiluiza-Ramos, P., Korth, B., Harnisch, F., Bañeras, Ll., Balaguer, M.D. and Puig, S. 2021. Electro-bioremediation of nitrate and arsenite polluted groundwater. <em>Water Research</em> 190C 116748".</p>
Strain fields in twisted bilayer graphene: Dataset 15 of 19
<p>See supplemental materials of Kazmierczak & Van Winkle et al for more information.</p> <p>20200616_14.h5 : dataset s2-14 corresponding to mean angle of 0.16</p>
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