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Zotero-Literature SNF-Project In the Shadow of the Tree
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Semantic fields and Castilianization in Galician: A comparative study with the Loanword Typology project (dataset)
<p>Dataset containing the data analyzed in "Semantic fields and Castilianization in Galician: A comparative study with the Loanword Typology project" (Fernández Rei, Elisa & Regueira Fernández, Xosé Luís (eds.), <em>New Developments in Galician Linguistics, </em>special issue of Languages) (forthcoming) https://www.mdpi.com/journal/languages/special_issues/8109M79HP8</p> <p> </p>
Photos and videos of the gelatine production in WaysTUP! project
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Data associated with the Caenorhabditis Genomes Project (caenorhabditis.org)
<p>This repository is to permanently accession data available at <a href="download.caenorhabditis.org">download.caenorhabditis.org</a> so that it can be cited in publications. </p> <p>To get past Zenodo file number restrictions, the three main directories are available as .zip files:</p> <ul> <li><code>genome_files.zip</code>: Genome assembly and annotation files associated with the v2 caenorhabditis.org release</li> <li><code>transcriptome_files.zip</code>: Transcriptome assembly and annotation files associated with the v2 caenorhabditis.org release</li> <li><code>v1_archive.zip</code>: directory containing an archive of the version 1 release, including genomes, annotations, and many other files</li> </ul> <p>If you plan to use the data in this repository, we would appreciate if you could acknowledge members of Caenorhabditis Genomes Project for access to prepublication data (e.g. "<em>We thank members of the Caenorhabditis Genomes Project for prepublication access to genome and transcriptome data</em>"). </p> <p>For an up-to-date list of manuscripts that have used this resource, please see <a href="https://scholar.google.co.uk/scholar?hl=en&q=%22caenorhabditis+genomes+project%22">https://scholar.google.co.uk/scholar?hl=en&q=%22caenorhabditis+genomes+project%22</a></p>
Data from project 'Stabilising heritage: Iron gall ink corrosion on paper and the eternal search for an ideal treatment', RAÄ-2023-0820
<p>Data from the project "Stabilising <span>heritage: Iron gall ink corrosion on paper and the eternal search for an ideal treatment</span>" (Diarienummer RAÄ-2023-0820) including files for sample descriptions. Data from the following analytical techniques is included: 1. Scanning electron microscopy with energy dispersive x-ray spectroscopy (SEM-EDS); 2. X-ray fluorescence spectroscopy (XRF). Instrument reports are also included. The intention of the project was to develop a non-aqueous treatment method for documents containing iron gall ink which could provide both mechanical stability and reduce the corrosion rate. SEM-EDS mapping was performed to observe the penetration depth of the ink and treatment materials in the paper samples while XRF lines scans were performed to better understand the phenomenon of a "halo" effect around certain ink samples after treatment. All data was collected as part of the master's thesis "Stabilising <span>heritage: Iron gall ink corrosion on paper and the eternal search for an ideal treatment</span>: " by Anna Lagerqvist Alidoost, Department for Conservation, University of Gothenburg (https://hdl.handle.net/2077/82110).</p>
Suplementary information for the Deliverable 3.2 of the EU TREASURE Project
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The phantom array experiment at the CSTB feat. Xiangzhen Kong and Anders Thorseth, supervised by Christophe Martinsons during the MetTLM project.
<p>This video shows the phantom array experiment carried out at the CSTB in Grenoble, France, featuring Xiangzhen Kong (the experimenter) and Anders Thorseth (the test subject), supervised by Christophe Martinsons (CSTB researcher) during the EMPIR MetTLM project funded by EURAMET.</p> <p>This experiment was designed to measure the sensitivity of people to the phantom array effect. The phantom array effect is a undesirable visual effect caused by temporal light modulation (TLM) occuring when high modulation frequencies are present in the light source while the observer moves their eyes. It is more visible in the dark than in bright ambient conditions. The highest visibility happens at around 600 Hz (peak of the sensitivity curve) but the phenomenon is visible from 80 Hz up to several kHz depending on the visual acuity of the observer.</p> <p>In this experiment, the light source was a fine slit. Its modulation frequency was slowed down to a few hertz in order to be seen easily on the video. The observer had to move their eyes back and forth between fixed points. Two sucessive stimuli were presented in a random order, a modulated stimulus and a steady-state stimulus (no TLM). The protocol was based on randomized, counterbalanced, repeated measures using a two-interval forced choice (2IFC) procedure optimized with an adaptive procedure called QUEST+ developed by Andrew Watson for psychovisual experiments. </p> <p>The experiment used an eye-tracing device to monitor the saccade speed and amplitude during the experiment.</p>
Synthetic data RELION project archive for ccpem-pipeliner cryodrgn jobs slow tests
<p>Synthetic data reconstructed via RELION4.0 used for testing CryoDRGN jobs in ccpem-pipeliner (https://gitlab.com/ccpem/ccpem-pipeliner). Micrographs simulated via Roodmus (<span>https://doi.org/10.1101/2024.04.29.590932</span>) using molcular conformations originating from DE Shaw simulation DESRES-ANTON-11021571 (D. E. Shaw Research, "Molecular Dynamics Simulations Related to SARS-CoV-2," D. E. Shaw Research Technical Data, 2020. https://www.deshawresearch.com/downloads/download_trajectory_sarscov2.cgi/)</p>
CRONUS project intro - HORIZON EU
<p>CRONUS addresses the current gaps in biofuels production, namely the carbon waste and biogenic effluent gases.</p> <p>This video is part of CRONUS HORIZON dissemination and communication activities.</p>
Summary of the ReLife Project Evolution
<p>In the latest developments of the ReLife project, the focus has been on defining and structuring the system's functional and non-functional requirements.</p> <p>Below is a summary of the most significant changes and evolutions to date:</p> <ol> <li> <p><strong>Functional Requirements:</strong></p> <ul> <li><strong>Initial Screening:</strong> Recording user data and assessing fitness.</li> <li><strong>Opt-in Interface for Terms and Risks:</strong> <ul> <li>Clear presentation of terms and risks.</li> <li>Consultant assistance to clarify doubts.</li> <li>Choice component for accepting or declining terms with various biometric options.</li> </ul> </li> <li><strong>Psychological and Neurological Tests:</strong> Recording results and identifying brain deficits.</li> <li><strong>Physical, Ethical, and Philosophical Tests:</strong> Recording results and assessing fitness.</li> <li><strong>Technical Presentation of the Project:</strong> Detailed presentation of the technical aspects to the user.</li> <li><strong>Administrative Interface for Initial History Registration:</strong> Collecting and storing medical and historical data with controlled access.</li> <li><strong>Memory and Consciousness Mapping:</strong> Securely mapping the user's memories and consciousness.</li> <li><strong>Transition to Simulated Environment:</strong> <ul> <li>Imperceptible transition of the user to the simulated environment.</li> <li>Secure storage of neural data.</li> <li>Continuous monitoring of the simulation.</li> </ul> </li> <li><strong>Virtual Reality Simulation:</strong> <ul> <li>Creating immersive and interactive environments.</li> <li>User interaction through thoughts and consciousness.</li> </ul> </li> <li><strong>Crucial Points Selection:</strong> Allowing users to choose a crucial point in the past to make a different decision, generating an alternative life path using generative AI.</li> </ul> </li> <li> <p><strong>Non-Functional Requirements:</strong></p> <ul> <li><strong>Opt-in Interface for Terms and Risks:</strong> <ul> <li>Accessibility in language and accessibility features.</li> <li>Maintaining a record of user consent.</li> </ul> </li> <li><strong>Performance:</strong> <ul> <li>Processing large volumes of neural data in real-time.</li> <li>Efficiency in generating alternative life scenarios.</li> <li>Rapid and seamless transition to the simulated environment.</li> </ul> </li> <li><strong>Security and Privacy:</strong> <ul> <li>Protection of personal and neural data.</li> <li>Encryption of data during collection, storage, and transfer.</li> </ul> </li> <li><strong>Usability:</strong> <ul> <li>Intuitive and easy-to-use interface, both outside and inside the simulated environment.</li> <li>Support for accessibility.</li> <li>Thought-based interaction within the simulated environment.</li> </ul> </li> <li><strong>Reliability:</strong> <ul> <li>High availability and resilience to failures.</li> <li>Backup and data recovery mechanisms.</li> </ul> </li> <li><strong>Legal and Ethical Compliance:</strong> <ul> <li>Compliance with all applicable legal regulations and ethical guidelines.</li> </ul> </li> </ul> </li> </ol> <p>These changes reflect a significant advancement in detailing and preparing for future phases of development and research.</p> <p>The ReLife project continues to explore the frontiers of technology, neuroscience, and ethics to create a new opportunity of life for those who need it most.</p>
Wind Value: First Conference 2022, Introduction to the Wind Value Research Project, Dorcas Mikindani, Video
<p>Video of 9 mins 1 second, introducing the broad outline of the Wind Value project by Dorcas Mikindani, PhD Student on the project.</p>
One Hand project - Transfer of prosthesis control skill after training in VR, data set pre-test post-test
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enrichment plots of IHEC TF-Prioritizer Project
<p>Store images for the IHEC TF-Prioritizer work</p>
DataCite Project Metadata Content
<p>A sample of DataCite records that included Project or project at the end of their resourceTypes were selected as "DataCite Projects". The metadata was read and values for a number of FAIR elements and for related identifiers were extracted. This spreadsheet has those data in two tabs: data__20240618 has the FAIR concepts and relatedIdentifier__20240716 has the related identifiers. There are also two pivot tables included in the sheet.</p> <p>These data were the subject of a blog post published during July 2024 at metadatagamechangers.com/blog.</p>
Data on methodology_paper_CapSa_project
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ISMIP6 23rd Century Projections
<p>These datasets provide the <a href="http://theghub.org/groups/ismip6/wiki/MainPage/ISMIP6Projections2300Antarctica" target="_blank" rel="external noopener">ISMIP6 Projections 2300 Antarctica</a> projection data that focus on simulations of the Antarctica Ice Sheet (AIS) extended to year 2300.</p> <p>These simulations are based on CMIP5 and CMIP6 climate model outputs, and are a follow-on to the simulations to 2100 described in <a href="https://theghub.org/groups/ismip6/wiki/MainPage/ISMIP6-Projections-Antarctica" target="_blank" rel="external noopener">ISMIP6 Projections Antarctica</a> and the papers by <a href="https://tc.copernicus.org/articles/14/2331/2020/" target="_blank" rel="external noopener noreferrer">Nowicki et al. (2020)</a> and <a href="https://tc.copernicus.org/articles/14/3033/2020/" target="_blank" rel="external noopener noreferrer">Seroussi et al. (2020)</a>.</p> <h3>Downloading Data</h3> <p>The data can be downloaded from the<a href="https://theghub.org/resources?id=5163"> Globus GHub-ISMIP6-Projections-2300 endpoin</a>t. Please log in and click on the Download tab to receive the Download instructions.</p>
Datasets for "Exploring the potential of neural machine translation for cross-language clinical NLP resource generation through annotation projection"
<p>This repository contains the data and additional resources used for the paper:</p> <p>"Exploring the Potential of Neural Machine Translation for Cross-Language Clinical NLP Resource Generation through Annotation Projection. Rodriguez Miret et al. Information (2024)".</p> <p>There are four different datasets included, namely:</p> <ul> <li>The (1) <strong><a href="https://temu.bsc.es/distemist" target="_blank" rel="noopener">DisTEMIST</a>, </strong>(2) <strong> <a href="https://temu.bsc.es/multicardioner" target="_blank" rel="noopener">DrugTEMIST</a> </strong>and<strong> </strong>(3) <strong><a href="https://temu.bsc.es/meddoprof" target="_blank" rel="noopener">MEDDOPROF</a> Spanish corpora and corresponding versions in 10 different languages</strong>, created through Machine Translation and annotation projection techniques. The Catalan annotations, used in the paper's experiments, were validated by bilingual expert annotators, who also provided alternative translations for the annotated terms in case they were wrongly translated. Thus, for Catalan we provide two different versions of the data: (i) the output of the annotation projection process as is, without any further validation, and (ii) the validated version of the data. For the rest of the languages (with the exception of the DrugTEMIST English and Italian data, used for the MultiCardioNER shared task), only an unvalidated version is provided.<strong><br></strong></li> <li>The (4) <strong>Catalan Clinical Case Corpus (CataCCC)</strong>, a collection of <em>200 clinical case reports in originally written in Catalan </em>covering a variety of clinical specialties. This corpus includes manually validated annotations for diseases, medications and professions created by the experts who annotated the corpora mentioned above, using the same guidelines and annottaion criteria. It can this be considered the first clinical Gold Standard corpus for diseases, medications and processions in Catalan.</li> </ul> <p>It is noteworthy that the MEDDOPROF-related data includes annotations for two labels, PROFESION and SITUACION_LABORAL, but only the former was used for training and evaluation in the paper.</p> <p>These are the <strong>10 languages</strong> included in the repository (along with their language codes):</p> <ul> <li><strong>Spanish</strong> (`es-gs`, with `gs` standing for Gold Standard)</li> <li><strong>Catalan</strong> (`cat`)</li> <li><strong>English</strong> (`en`)</li> <li><strong>French</strong> (`fr`)</li> <li><strong>Italian</strong> (`it`)</li> <li><strong>Dutch</strong> (`nl`)</li> <li><strong>Portuguese</strong> (`pt`)</li> <li><strong>Romanian</strong> (`ro`)</li> <li><strong>Swedish</strong> (`sv`)</li> <li><strong>Czech</strong> (`cz`)</li> </ul> <h2><strong>Related Links</strong></h2> <ul> <li><a href="../doi/10.5281/zenodo.13151039" target="_blank" rel="noopener">Validation and Correction Guidelines for the Multilingual Annotation Projection of Gold Standard Corpora</a></li> <li><a href="https://temu.bsc.es/multicardioner/" target="_blank" rel="noopener">MultiCardioNER Shared Task</a> </li> </ul> <h2><strong>License</strong></h2> <p>This work is licensed under a <a href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a>.</p> <h2><strong>Contact</strong></h2> <p>If you have any questions or suggestions, please contact us at:</p> <p>- Salvador Lima-López (<salvador [dot] limalopez [at] gmail [dot] com>)<br>- Martin Krallinger (<krallinger [dot] martin [at] gmail [dot] com>)</p>
Supplementary material 3 from: Lörz A-N, Tandberg AHS, Willassen E, Driskell A (2018) Rhachotropis (Eusiroidea, Amphipoda) from the North East Atlantic. In: Brix S, Lörz A-N, Stransky B, Svavarsson J (Eds) Amphipoda from the IceAGE-project (Icelandic marine Animals: Genetics and Ecology). ZooKeys 731: 75–101. https://doi.org/10.3897/zookeys.731.19814
Figure S1. Tree showing COI sequence cluster derived from ABGD (Automatic Barcode Gap Discovery) analysis using simple distances and default parameter settings. :
Supplementary material 2 from: Brix S, Lorz A-N, Jazdzewska AM, Hughes L, Tandberg AHS, Pabis K, Stransky B, Krapp-Schickel T, Sorbe JC, Hendrycks E, Vader W, Frutos I, Horton T, Jazdzewski K, Peart R, Beermann J, Coleman CO, Buhl-Mortensen L, Corbari L, Havermans C, Tato R, Campean AJ (2018) Amphipod family distributions around Iceland. In: Brix S, Lorz A-N, Stransky B, Svavarsson J (Eds) Amphipoda from the IceAGE-project (Icelandic marine Animals: Genetics and Ecology). ZooKeys 731: 1-53. https://doi.org/10.3897/zookeys.731.19854
Supplementary material 2 from: Brix S, Lorz A-N, Jazdzewska AM, Hughes L, Tandberg AHS, Pabis K, Stransky B, Krapp-Schickel T, Sorbe JC, Hendrycks E, Vader W, Frutos I, Horton T, Jazdzewski K, Peart R, Beermann J, Coleman CO, Buhl-Mortensen L, Corbari L, Havermans C, Tato R, Campean AJ (2018) Amphipod family distributions around Iceland. In: Brix S, Lorz A-N, Stransky B, Svavarsson J (Eds) Amphipoda from the IceAGE-project (Icelandic marine Animals: Genetics and Ecology). ZooKeys 731: 1-53. https://doi.org/10.3897/zookeys.731.19854
Supplementary material 3 from: Brix S, Lorz A-N, Jazdzewska AM, Hughes L, Tandberg AHS, Pabis K, Stransky B, Krapp-Schickel T, Sorbe JC, Hendrycks E, Vader W, Frutos I, Horton T, Jazdzewski K, Peart R, Beermann J, Coleman CO, Buhl-Mortensen L, Corbari L, Havermans C, Tato R, Campean AJ (2018) Amphipod family distributions around Iceland. In: Brix S, Lorz A-N, Stransky B, Svavarsson J (Eds) Amphipoda from the IceAGE-project (Icelandic marine Animals: Genetics and Ecology). ZooKeys 731: 1-53. https://doi.org/10.3897/zookeys.731.19854
Supplementary material 3 from: Brix S, Lorz A-N, Jazdzewska AM, Hughes L, Tandberg AHS, Pabis K, Stransky B, Krapp-Schickel T, Sorbe JC, Hendrycks E, Vader W, Frutos I, Horton T, Jazdzewski K, Peart R, Beermann J, Coleman CO, Buhl-Mortensen L, Corbari L, Havermans C, Tato R, Campean AJ (2018) Amphipod family distributions around Iceland. In: Brix S, Lorz A-N, Stransky B, Svavarsson J (Eds) Amphipoda from the IceAGE-project (Icelandic marine Animals: Genetics and Ecology). ZooKeys 731: 1-53. https://doi.org/10.3897/zookeys.731.19854
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.