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FIGURE 5 in Morphology and SSU rDNA sequences of four cyrtophorian ciliates from China, with description of a new species (Protista, Ciliophora, Phyllopharyngea)
FIGURE 5. Photomicrographs of Dysteria monostyla (A–E) and D. crassipes (F–I) from live (A, B, F, and G) and after protargol impregnation (C–E and H, I). A. Left lateral view of a representative individual, arrowheads show contractile vacuoles (CV). B. Cell surface, arrow refers to the transverse stripe, arrowhead shows bar-shaped ectosymbiotic bacteria. C. Left lateral view of ciliary pattern. D. Anterior part of cell. E. Ventral view of mid-body. F. Left lateral view of a representative individual, arrows point to contractile vacuoles. G. Rod-shaped ectosymbiotic bacteria attached on cell surface (arrowheads). H, I. Left lateral views of ciliature. Abbreviations: Co—circumoral kineties; EF—equatorial fragment; FvK—frontoventral kineties; Lfleft frontal kineties; LK—left kineties; Ma—macronucleus; Pr—preoral kinety; RK—right kineties; TF—terminal fragment. Scale bars: 30 μm (A, C, F and H).
FIGURE 4 in Morphology and SSU rDNA sequences of four cyrtophorian ciliates from China, with description of a new species (Protista, Ciliophora, Phyllopharyngea)
FIGURE 4. Photomicrographs of Chlamydodon bourlandi from life (A, D, and E in bright field, B, C, F, and G by differential interference contrast), after fluorescent staining (H), and after protargol staining (I–L). A, G. Ventral views of different individuals. B. Nematodesmal rods from a compressed cell, arrowheads indicate C-shaped clasps. C. Ventral view of part of a compressed cell showing macronucleus, arrow denotes the cross-striated band. D. Cortical granules on dorsal side, arrowhead marks the pigment spot. E. Cortical granules (arrowhead) on ventral side. F. Ventral view of cell, arrowheads indicate the pigment spot. H. Macronucleus. I. Ventral view of ciliature and macronucleus. J, K. Ventral view of the anterior part of ciliature showing oral structure. L. Dorsal view of the anterior body, arrowheads indicate the terminal fragments. Abbreviations: Cocircumoral kineties; Cs—cytostome; Ma—macronucleus; NR—nematodesmal rods; Pr—preoral kinety. Scale bars: 100 μm.
FIGURE 3 in Morphology and SSU rDNA sequences of four cyrtophorian ciliates from China, with description of a new species (Protista, Ciliophora, Phyllopharyngea)
FIGURE 3. Photomicrographs of Chlamydodon pararoseus sp. n. from life (A, D, and E by differential interference contrast, B, C, and F in bright field), after fluorescent staining (G), and after protargol staining (H–L). A, B. Ventral views of slightly compressed individuals, arrow in (A) marks the cytostome, and arrowheads indicate contractile vacuoles, and arrows in (B) refer to the sub-equatorial fossa. C, E. Dorsal views, arrow marks the cytostome, and arrowheads mark the pigment spot. D, F. Ventral views of individuals showing variations in body shape. G. Macronucleus. H. Ventral ciliature. I. Oral structure. J. Barren kinetosomes in oral area. K. Terminal fragment. L. Sub-equatorial fossa after protargol staining. Abbreviations: Co—circumoral kineties; Ks—barren kinetosomes; Ma—macronucleus; Pr—preoral kinety; TF—terminal fragment. Scale bars: 40 μm.
FIGURE 1 in Morphology and SSU rDNA sequences of four cyrtophorian ciliates from China, with description of a new species (Protista, Ciliophora, Phyllopharyngea)
FIGURE 1. Locations of the sample sites. A. Overview of locations. B. A mangrove wetland in Zhanjiang. C. A small puddle of the Dongpo Lake, Haikou. D, E. Intertidal zone in Qingdao, arrow indicates the sampling pool. E. The same tidal pool as shown by arrow in D.
FIGURE 6 in Morphology and SSU rDNA sequences of four cyrtophorian ciliates from China, with description of a new species (Protista, Ciliophora, Phyllopharyngea)
FIGURE 6. Phylogenetic tree of Maximum-likelihood (ML) based on small SSU rRNA gene sequences with Bayesian inference (BI) tapped on it. The four new sequences in the present paper are highlighted in bold. Numbers at nodes show ML bootstrap values and the BI posterior probabilities (ML/BI). Values with full support (ML/BI, 100/1.00) are marked with solid circle. The scale bar corresponds to 5 substitutions per 100 nucleotide positions. * Guangdong population of Chlamydodon bourlandi, ** misidentification, should be Chlamydodon bourlandi.
FIGURE 2 in Morphology and SSU rDNA sequences of four cyrtophorian ciliates from China, with description of a new species (Protista, Ciliophora, Phyllopharyngea)
FIGURE 2. Drawings of Chlamydodon pararoseus sp. n. from life (A–D) and after protargol staining (E–G). A. Ventral side of a representative individual. Dorsal (B) and ventral (C) views of a compressed individual, arrows denote the cross-striated band (CSB) and the arrowheads mark pigment spots. D. Cyrtos. E, F. Ventral (E) and dorsal (F) views of the same holotype specimen, arrow indicates the sub-equatorial fossa. G. Ventral view of anterior cell, arrow marks the suture, arrowheads denote barren kinetosomes. Abbreviations: Co—circumoral kineties; CSB—cross-striated band; LK—left kineties; Ma—macronucleus; NR—nematodesmal rods; PoK—postoral kineties; Pr—preoral kinety; RK—right kineties; TF—terminal fragments. Scale bars: 40 μm.
additional file 3 for De novo transcriptome sequencing of Serangium japonicum (Coleoptera: Coccinellidae)
<p>The different expression unigenes between in summer and in winter. TPM: transcripts per million reads. pValue: statistic test p value. qValue: corrected p value after multiple tests. </p>
APPENDIX. GenBank accession numbers of all DNA sequences of Cophyla used in this study. NA, not applicable. Asterisks mark cases where sequences from different samples were combined to chimeric terminals for analysis. in Description of the lucky Cophyla (Microhylidae, Cophylinae), a new arboreal frog from Marojejy National Park in north-eastern Madagascar
APPENDIX. GenBank accession numbers of all DNA sequences of Cophyla used in this study. NA, not applicable. Asterisks mark cases where sequences from different samples were combined to chimeric terminals for analysis.
Assessment of a multiplex PCR and Nanopore-based method for portable dengue virus sequencing in Indonesia
<p>Multiplex primer sets for amplification of the complete coding region of Indonesian dengue virus.</p>
Synthetic catalog of seismicity and stressing rate history for "Scaling and variability of interacting repeating earthquake sequences controlled by asperity density"
<p>Sheets 1 to 14: Synthetic catalogs of seismicity listing (for each earthquake):</p> <ul> <li>non dimensional time (1st column)</li> <li>non dimensional seismic moment (2nd column)</li> <li>non dimensional equivalent source radius (3rd column)</li> <li>non dimensional position along strike x (4th column)</li> <li>non dimensional position along dip y (5th column)2</li> </ul> <p>Sheets 15 to 28: time series of the spatial average of:</p> <ul> <li>non dimensional slip (2nd column)</li> <li>non dimensional slip rate (3rd column) </li> <li>non dimensional shear stress (4th column)</li> </ul> <p>Time series corresponding to catalog in sheet i is provided in sheet i+14. See the reference paper for details about the non dimensionalization.</p>
FIGURE 7. Sparsorythus multilabeculatus, 7a in Description of nymphs and female subimago of Sparsorythus multilabeculatus Sroka & Soldán, 2008 (Ephemeroptera: Tricorythidae) associated with male imago based on DNA sequence data
FIGURE 7. Sparsorythus multilabeculatus, 7a. foreleg; 7b. midleg; 7c. hindleg; 7d. female cerci and paracercus; 7e. segment of female cerci; 7f. male cerci and paracercus; 7g. segment of female cerci. Scale bars: 0.5 mm (7a–7c); 0.1 mm (7d, 7f); 0.02 mm (7e, 7g).
FIGURE 2 in Description of nymphs and female subimago of Sparsorythus multilabeculatus Sroka & Soldán, 2008 (Ephemeroptera: Tricorythidae) associated with male imago based on DNA sequence data
FIGURE 2. Wang Tao waterfall, Thap Lan National Park, Khon Buri District, Nakhon Ratchasima Province, Thailand, where the specimens of Sparsorythus multilabeculatus were collected.
Sequencing of ABL1 from a CML patient
<p>Capture and Duplex Sequencing of the human ABL1 gene</p>
Fig. 1 in Allopolyploid origin of the Balkan endemic Ranunculus wettsteinii (Ranunculaceae) inferred from nuclear and plastid DNA sequences
Fig. 1 Phylogenetic tree for Ranunculus species based on internal transcribed spacer (ITS) sequences. a Consensus tree inferred from the six most parsimonious trees (CI=0.72; RI=0.93). Numbers above branches show bootstrap values (3,000 replicates). b Majority-rule consensus of
Fig. 2 Splits graph for ITS sequences from 26 in Allopatric divergence and secondary contacts in Euphorbia spinosa L: Influence of climatic changes on the split of the species
Fig. 2 Splits graph for ITS sequences from 26 ribotypes of E. spinosa. Branch lengths were estimated using the standard implementation of split decomposition (SplitsTree 4.0 beta 06). Ribotype abbreviations are given in Table 3
Fig. 6 in Skeletogenesis and sequence heterochrony in rodent evolution, with particular emphasis on the African striped mouse, Rhabdomys pumilio (Mammalia)
Fig. 6 Camera lucida drawings of the right hand (shown at left) and foot, in dorsal views, of Rhabdomys pumilio. Autopodial elements: as = astragalus, ca = calcaneus, ce = centrale, dc = distal carpal, dt = distal tarsal, f = fibula, mc = metacarpal, mt = metatarsal, nv = navicular, pi = pisiform, r = radius, sc = scaphoid, u = ulna, t = tibia, tr = triquetrum. Scales: 2 mm
Fig. 3 in Skeletogenesis and sequence heterochrony in rodent evolution, with particular emphasis on the African striped mouse, Rhabdomys pumilio (Mammalia)
Fig. 3 Cleared and double-stained rodents prepared at the Paläontologisches Institut, Zürich. Left: Octodon degus. Right: Rhabdomys pumilio. Scale: 2 mm
Fig. 4 in Skeletogenesis and sequence heterochrony in rodent evolution, with particular emphasis on the African striped mouse, Rhabdomys pumilio (Mammalia)
Fig. 4 Ossification of elements of the left hand (respective up- per row) and foot (lower row), in dorsal views, of Rhabdomys pumilio; black = ossified, grey = calcified. Number of specimens examined (N)= 1, except at stages a (N =16), f (6), g (2), n (9), y (4), and z (2)
Fig. 1 in Skeletogenesis and sequence heterochrony in rodent evolution, with particular emphasis on the African striped mouse, Rhabdomys pumilio (Mammalia)
Fig. 1 Phylogenetic relationships among the species includ- ed in this study, reconstructed from Steppan et al. (2004), Bininda-Emonds et al. (2007), and Blanga-Kanfi et al. (2009)
Fig. 2 A in Skeletogenesis and sequence heterochrony in rodent evolution, with particular emphasis on the African striped mouse, Rhabdomys pumilio (Mammalia)
Fig. 2 A sample of ontogenetic series prepared for this study at the Paläontologisches Institut und Museum, Zürich. a Cavia porcellus. b Rhabdomys pumilio. c Octodon degus. Scales: 2 mm
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.