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AlphaFold2 Modeling and Molecular Dynamics Simulations of the Conformational Ensembles for the SARS-CoV-2 Spike Omicron JN.1, KP.2 and KP.3 Variants : Mutational Profiling of Binding Energetics Reveals Epistatic Drivers of the ACE2 Affinity and Escape Hotspots of Antibody Resistance
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Figure 1 in Socioeconomic aspects and profile of fishing according to fishers of commercial edible fish in the municipality of Barcelos, middle Negro River, Amazonas, Brazil
Figure 1. Demonstrative map of the region of the Municipality of Barcelos in the middle Negro River basin, State of Amazonas.
Figure 5 in Socioeconomic aspects and profile of fishing according to fishers of commercial edible fish in the municipality of Barcelos, middle Negro River, Amazonas, Brazil
Figure 5. Age of onset in the commercial fishing activity of fishermen in the municipality of Barcelos, in the middle Negro River basin, Amazonas.
Fig. 6 in Expression profile of two HSP70 chaperone proteins in response to extreme thermal acclimation in Xestia c-nigrum (Lepidoptera: Noctuidae)
Fig. 6. Xc-HSP70 mRNA expression profiles induced by cold (−7 to 5 °C) and heat (37 to 47 °C) in 2nd, 3rd, 4th, 5th, and 6th instars and pupae of Xestia cnigrum. The relative quantities indicate the levels of the HSP70 gene transcript normalized against transcript levels of β-actin as an internal standard and compared with the transcript levels of the untreated control at 25 °C. An asterisk indicates a significant difference between the control and heat shock conditions (significant, * P <0.05). The data are denoted as the mean ± SEM (error bar).
Fig. 2 in Disruption of the leafminer Phyllocnistis citrella (Lepidoptera: Gracillariidae) in citrus: effect of blend and placement height, longevity of disruption and emission profile of a new dispenser
Fig. 2. Mean ± SEM (n = 14) number of male Phyllocnistis citrella captured in pheromone-baited traps in untreated control plots (filled circles) and in pheromonetreated plots (open circles) of grapefruit at VPI-5 grove, St. Lucie County, Florida, USA (n = 8). Triangles represent mean ± SEM (n = 8) percentage trap catch disruption (right y axis).
Fig. 3 in Disruption of the leafminer Phyllocnistis citrella (Lepidoptera: Gracillariidae) in citrus: effect of blend and placement height, longevity of disruption and emission profile of a new dispenser
Fig. 3. Mean ± SEM (n = 14) number of male Phyllocnistis citrella captured in pheromone-baited traps in untreated control plots (filled circles, n = 12) and in pheromone-treated plots (open circles) of grapefruit at TRB grove, Charlotte County, Florida, USA (n = 6). Triangles represent mean ± SEM (n = 6) percentage trap catch disruption (right y axis).
Supplementary Material from: "Wnt/B-catenin activation and TP53 mutations associate with distinct immune profiles in advanced thyroid cancer"
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Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling
<p>Metatranscriptomic assembly, predicted open reading frames, counts, and annotation files from seawater samples obtained in the western North Atlantic Ocean. GitHub notebooks are located here: <a href="https://github.com/cnatalie/BATS">https://github.com/cnatalie/BATS</a>. Assembly was created using the <em>eukrhythmic</em> pipeline: <a href="https://github.com/AlexanderLabWHOI/eukrhythmic">https://github.com/AlexanderLabWHOI/eukrhythmic</a></p> <ul> <li>merged_merged.fasta.gz = Final assembly, merged across 44 metatranscriptomes using 4 different assemblers</li> <li>merged.fasta.transdecoder.pep.zip = Open reading frames of final assembly, predicted by Transdecoder </li> <li>merged.fasta.transdecoder-estimated-taxonomy.out.zip = EUKulele-derived taxonomic annotations of ORFs using a combined EukProt, PhyloDB, and RefSeq reference database</li> <li>newtaxa.eukprot.merged.fasta.transdecoder-estimated-taxonomy.out.zip = similar to above, but manually curated mid-level taxonomy for supergroups of interest</li> <li>eggnog.emapper.annotations.zip = eggnog-mapper annotations of ORFs</li> <li>table.tab.zip = counts associated with ORFs (merged.fasta.transdecoder.pep) generated with Salmon</li> <li>TPM_table.tab.zip = community-wide TPM (normalized) counts associated with ORFs (merged.fasta.transdecoder.pep) generated with Salmon</li> <li>copiesperL_ORFs_FactorIncluded.csv.zip = raw counts associated with ORFs (merged.fasta.transdecoder.pep) converted to copies per L taking into account spiked-in RNA standard concentration (copies), standard reads mapped, volume of seawater filtered, and dilution factor used in library preparation</li> <li>assembly.table.tab.zip = counts associated with final assembly (merged_merged.fasta) generated with Salmon</li> <li>SamplesViewReportCLIO_AE1913merged_trans210506_updated220606exclusive.zip = Exclusive spectral counts associated with ORFs (merged.fasta.transdecoder.pep). Peptide-spectrum matches were performed using Sequest algorithm within IseNode Proteome Discoverer 2.2.0.388 (Thermo Fisher Scientific). Scaffold 5.1.2 (Proteome Software) was used for protein grouping and exclusive spectral counting. Note, the (+x) data has been removed from protein names, which indicates whether (and how many) proteins sharing peptides were designated into the same protein group. </li> <li>cds.length2.tab.zip = Length of proteins (ORFs) in nucleotide base pairs</li> <li>CTD.zip = CTD files from cruise AE1913</li> </ul>
A Comparison of Two Methods For Resolving Displacement Heights in Fitting Logarithmic Windspeed and Air Temperature Profiles
<p>This respository houses a distribution of percentage errors as a comparison between estimated aerodynamic parameters and their known values. This helps to test and quantify the overall accuracy of a new method to resolve the displacement heights in fitting logarithmic windspeed and temperature profiles. This dataset is associated with the MRes project '<span>Aerodynamic Roughness Controlled by Wind Direction, with Implications for Glacial Surface Energy Balance and Melt Rate</span>', by Josh Abrahams, University of Leeds. </p>
Nicosia, Cyprus. Bedesten, west portal, moulding profile.
<p>Nicosia, Cyprus. Bedesten, west portal, moulding profile. As documented 1981.</p>
Overweight and obese patients with Nickel allergy have a worse metabolic profile compared to weight matched non-allergic individuals
<p>Deidentified dataset</p>
FIGURE 9 in The RNA-seq approach to discriminate gene expression profiles in response to Beauveria bassiana and Micrococcus luteus microbial pathogens on Actias selene (Lepidoptera: Saturniidae)
FIGURE 9. Larva and adult of Actias selene.
Propellant and Gunshot Residue Profiles Obtained With GunShotMatch
<p>This dataset contains the following profiles:</p> <ul> <li>Gunshot residue from Sellier & Bellot 9 mm Parabellum FMJ, Batch 4211/9</li> <li>Gunshot residue from Sellier & Bellot 9 mm Parabellum, Batch 843 (old stock)</li> <li>Gunshot residue from Magtech 9 mm Parabellum LRN, Batch BA0916 L-93</li> <li>Gunshot residue from Magtech Cleanrange 9 mm Parabellum JSP, Batch BA0910 L-01</li> <li>Gunshot residue from CBC 9 mm Parabellum FMJ, Batch AQD518 L-430 (old stock)</li> <li>Propellant and gunshot residue from Eley Contact .22 Long Rifle</li> <li>Propellant and gunshot residue from Geco Rifle .22 Long Rifle</li> <li>Propellant and gunshot residue from Winchester Pistol .22 Long Rifle (old stock)</li> <li>Alliant Unique reloading propellant</li> </ul> <p> </p> <p>These profiles were obtained with GunShotMatch (https://doi.org/10.5281/zenodo.2669156) following Gas Chromatography-Mass Spectrometry</p> <p> </p>
Chemical Profiles of Shexiang Tongxin Dropping Pill Based on HPLC Fingerprints Combined with HPLC-Q-TOF-MSMS Method
<p>supporting information</p>
Text-fig. 2. Vertebral profiles of Auxis thazard. VL, central length; VH, central height; VW, central width. in On The Morphology Of The Vertebral Column Of The Frigate Tuna, Auxis Thazard (Lacepedea, 1800) (Family: Scombridae) Collected From The Sea Of Oman
Text-fig. 2. Vertebral profiles of Auxis thazard. VL, central length; VH, central height; VW, central width.
Dataset of Tourist Profiles in Sucre
<p><span>We obtained the data from the platforms Foursquare and TripAdvisor through</span><br><span>a semi-automatic scraping process of tourist sites in the department of Sucre,</span><br><span>using the BeautifulSoup library, since access to the APIs of these two platforms</span><br><span>is limited and this scraping tool is being improved to extract data from different</span><br><span>tourist platforms. We carried out a collection process covering 45 tourist sites</span><br><span>from Foursquare and 32 from TripAdvisor. The extracted data include the place</span><br><span>name, ID, rating, municipality, and comments. Altogether, we collected 1298</span><br><span>comments, thus providing a comprehensive observation of tourists’ experience</span><br><span>at these tourist sites in Sucre. This consolidated dataset offers essential infor-</span><br><span>mation for analysis in the field of local tourism in Sucre. </span></p>
CTD profiles Billefjorden
<p>CTD profiles taken in Billefjorden in 2022 and 2023. Further information and metadata can be found in the vp2 files, with information on the dates, sampling coordinates and type of equipment used.</p>
Joint profiling of cell morphology and gene expression during in vitro neurodevelopment (scRNA-seq data)
<p>Single cell RNA sequencing data: raw counts matrix and associated metadata including cell type annotations, and monocle3 cds object. </p>
Metanotum anguleux vu de profil in Les abeilles du genre Xylocopa Latreille (Hymenoptera : Apoidea : Apidae) au Burundi, de bons pollinisateurs des légumineuses
Metanotum anguleux vu de profil
Scutellum à bord postérieur angulaire vu de profil in Les abeilles du genre Xylocopa Latreille (Hymenoptera : Apoidea : Apidae) au Burundi, de bons pollinisateurs des légumineuses
Scutellum à bord postérieur angulaire vu de profil
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.