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12,393 results for “materiality”
Supplementary material for: Exploring the impact of unstable terminals on branch support values in paleontological data
<p>The dataset consists of a PDF file and two plain-text TNT scripts (*.run files). The PDF includes supporting Figures for the additional analyses conducted by Flores et al. on paleontological datasets. The TNT scripts conduct two complementary sets of analyses: (a) evaluation of taxon instability relative to the incompleteness ("mc.run"), and (b) changes in branch support values after pruning unstable taxa ("avmc.run"). To properly run these files in TNT, the name of the matrix files should be given as arguments (see the TNT documentation webpage for details on the usage of script files). The scripts generate CSV-formatted output for being subsequently read into any other software. Script files are provided as "ready-for-use", and are freely distributable and modifiable. We request that you cite the respective paper and dataset.</p>
Supplementary material 1 from: Guedes GHS, Salgado FLK, Uehara W, de Pavia Ferreira DL, Araújo FG (2020) The recapture of Leptopanchax opalescens (Aplocheiloidei: Rivulidae), a critically endangered seasonal killifish: habitat and aspects of population structure. Zoologia 37: 1-8. https://doi.org/10.3897/zoologia.37.e54982
Figure S1. Photographic records of Leptopanchax opalescens in an aquarium after three hours of capture (Photos 1–3), and record of a male specimen with more exuberant color immediately after capture in its natural habitat (Photos 4–5). Date: March 19th, 2020; Coordinates: 22°42.35'S, 43°41.59'W.
Supplementary material 1 from: ter Hofstede HM, Symes LB, Martinson SJ, Robillard T, Faure P, Madhusudhana S, Page RA (2020) Calling songs of Neotropical katydids (Orthoptera: Tettigoniidae) from Panama. Journal of Orthoptera Research 29(2): 137-201. https://doi.org/10.3897/jor.29.46371
Supplementary material 1 from: ter Hofstede HM, Symes LB, Martinson SJ, Robillard T, Faure P, Madhusudhana S, Page RA (2020) Calling songs of Neotropical katydids (Orthoptera: Tettigoniidae) from Panama. Journal of Orthoptera Research 29(2): 137-201. https://doi.org/10.3897/jor.29.46371
Supplementary material 2 from: ter Hofstede HM, Symes LB, Martinson SJ, Robillard T, Faure P, Madhusudhana S, Page RA (2020) Calling songs of Neotropical katydids (Orthoptera: Tettigoniidae) from Panama. Journal of Orthoptera Research 29(2): 137-201. https://doi.org/10.3897/jor.29.46371
Supplementary material 2 from: ter Hofstede HM, Symes LB, Martinson SJ, Robillard T, Faure P, Madhusudhana S, Page RA (2020) Calling songs of Neotropical katydids (Orthoptera: Tettigoniidae) from Panama. Journal of Orthoptera Research 29(2): 137-201. https://doi.org/10.3897/jor.29.46371
Supplementary material 3 from: Duron Q, Cornulier T, Vidal E, Bourguet E, Ruffino L (2020) Combining live and lethal trapping to inform the management of alien invasive rodent populations in a tropical montane forest. NeoBiota 63: 101-125. https://doi.org/10.3897/neobiota.63.53811
Mean distances (± se) of trapped rats from the edge of the removal area during the four trapping sessions
Supplementary material 4 from: Duron Q, Cornulier T, Vidal E, Bourguet E, Ruffino L (2020) Combining live and lethal trapping to inform the management of alien invasive rodent populations in a tropical montane forest. NeoBiota 63: 101-125. https://doi.org/10.3897/neobiota.63.53811
Distances (in meters) travelled between rats' home range centers in the CMR area and their recapture in the removal area for 27 individuals
Supplementary material 3 from: {"en": "Mustapeng AMA, Suleiman M (2020) New and noteworthy Hypnales (Bryophyta) records from the Nuluhon Trusmadi Forest Reserve in Borneo. Check List 16(6): 1663-1671. https://doi.org/10.15560/16.6.1663"}
Supplementary material 3 from: {"en": "Mustapeng AMA, Suleiman M (2020) New and noteworthy Hypnales (Bryophyta) records from the Nuluhon Trusmadi Forest Reserve in Borneo. Check List 16(6): 1663-1671. https://doi.org/10.15560/16.6.1663"}
Supplementary material 2 from: Stampar SN, Gamero-Mora E, Maronna MM, Fritscher JM, Oliveira BSP, Sampaio CLS, Morandini AC (2020) The puzzling occurrence of the upside-down jellyfish Cassiopea (Cnidaria: Scyphozoa) along the Brazilian coast: a result of several invasion events? Zoologia 37: 1-10. https://doi.org/10.3897/zoologia.37.e50834
Table S1. Genetic distance matrix over sequence pairs within Cassiopea andromeda. Values shown below diagonal are uncorrected pairwise distances. Above the diagonal are the number of bases that are not identical. 1. Cassiopea_Alagoas_1; 2. Cassiopea_Alagoas_2; 3. Cassiopea_Alagoas_3; 4. Cassiopea_Alagoas_4; 5. CandroHaw8; 6. CandroHaw10; 7. CandroHaw7; 8. CandroHaw9; 9. CandroHaw1; 10. CandroEgyRSea; 11. Cbrazil; 12. CxamaBerm3 13. CxamaBerm4 14. CandroHaw4 15. CxamaBerm1 16. CandroHaw5 17. CxamaBerm2 18. CxamaUSAFl1.
Supplementary material 1 from: Stampar SN, Gamero-Mora E, Maronna MM, Fritscher JM, Oliveira BSP, Sampaio CLS, Morandini AC (2020) The puzzling occurrence of the upside-down jellyfish Cassiopea (Cnidaria: Scyphozoa) along the Brazilian coast: a result of several invasion events? Zoologia 37: 1-10. https://doi.org/10.3897/zoologia.37.e50834
Figure S1. Map showing the collection localities of Cassiopea sequences used in the phylogenetic analysis. The green square refers to the site of collection of the population of C. andromeda from Alagoas, Brazil. Each color indicates a species. Cassiopea sp. 5 does not appear because of its unknown locality.
Supplementary material 1 from: Caterino MS, Tishechkin AK (2020) Recognition and revision of the Phelister blairi group (Histeridae, Histerinae, Exosternini). ZooKeys 1001: 1-154. https://doi.org/10.3897/zookeys.1001.58447
Table S1. Taxa selected for the phylogenetic reanalysis performed in this paper, along with what data partitions were available and included
Supplementary material 1 from: Bustamante RO, Alves L, Goncalves E, Duarte M, Herrera I (2020) A classification system for predicting invasiveness using climatic niche traits and global distribution models: application to alien plant species in Chile. NeoBiota 63: 127-146. https://doi.org/10.3897/neobiota.63.50049
Table S1. Exotic species located in Quadrant 1 (see Figure 3) and impacts on biodiversity, agriculture and cattle raisng
Implementing standardized provider documentation in a tertiary epilepsy clinic: supplemental material
<p class="CxSpFirst"><b>Objective: </b>To incorporate standardized documentation into an epilepsy clinic and use these standardized data to compare patients' perception of epilepsy diagnosis to provider documentation.</p> <p class="CxSpMiddle"><b>Methods: </b>Using quality improvement methodology, we implemented interventions to increase documentation of epilepsy diagnosis, seizure frequency and type from 49.8% to 70% of adult non-employee patients seen by six providers over five months of routine clinical care. The main intervention consisted of an interactive SmartPhrase that mirrored a documentation template developed by the Epilepsy Learning Healthcare System. We assessed the weekly proportion of complete SmartPhrases among eligible patient-encounters with a statistical process control chart. We used a subset of patients with established epilepsy care linked to existing patient-reported survey data to examine the proportion of patient-to-provider agreement on epilepsy diagnosis (yes vs no/unsure). We also examined socio-demographic and clinical characteristics of patients who disagreed vs agreed with provider's documentation of epilepsy diagnosis.</p> <p><b>Results: </b>The median SmartPhrase weekly completion rate was 78%. Established patients disagreed with providers with respect to epilepsy diagnosis in 18.5% of encounters (κ = 0.13), indicating that they did not have, or were unsure if they had, epilepsy despite having a provider-documented epilepsy diagnosis. Patients who disagreed with providers were similar to those who agreed with respect to age, sex, ethnicity, marital status, seizure frequency, type, and other quality of life measures.</p> <p class="CxSpMiddle"><b>Conclusions: </b>This project supports the feasibility of implementing standardized documentation of data relevant to epilepsy care in a tertiary epilepsy clinic and highlights an opportunity for improvement in patient-provider communication.</p>
Supplementary Material to Context-tailored Workload Model Generation for Continuous Representative Load Testing
<p>This package contains files and instructions to replicate our experiments on context-tailored workload model generation for continuous representative load testing. Please download and extract the <code>context-tailoring.tar.gz</code> file and view <code>index.html</code> (also contained in the tarball) for further instructions.</p> <p><code>cobra-db.tar.gz </code>is only required for skipping parts of the steps (see the detailed instructions).</p>
Supplementary material 1 from: Kodada J, Jäch MA, Freitag H, Čiamporová-Zaťovičová Z, Goffová K, Selnekovič D, Čiampor Jr F (2020) Ancyronyx lianlabangorum sp. nov., a new spider riffle beetle from Sarawak, and new distribution records for A. pulcherrimus Kodada, Jäch & Čiampor based on DNA barcodes (Coleoptera, Elmidae). ZooKeys 1003: 31-55. https://doi.org/10.3897/zookeys.1003.55541
Table S1. Pairwise genetic distances (Kimura 2-parameter distance) between nucleotide sequences of Ancyronyx and Graphelmis species based on the 648 bp barcoding fragment of COI.
Supplementary material 4 from: Kodada J, Jäch MA, Freitag H, Čiamporová-Zaťovičová Z, Goffová K, Selnekovič D, Čiampor Jr F (2020) Ancyronyx lianlabangorum sp. nov., a new spider riffle beetle from Sarawak, and new distribution records for A. pulcherrimus Kodada, Jäch & Čiampor based on DNA barcodes (Coleoptera, Elmidae). ZooKeys 1003: 31-55. https://doi.org/10.3897/zookeys.1003.55541
Table S3. Pairwise genetic distances (p-distance) between 29 amino acid sequences (216 positions) of Ancyronyx species and the genus Graphelmis (outgroup).
Supplementary materials: Monitoring recovery of overgrazed lichen communities on Hagemeister Island, southwestern Alaska
<p>Understanding the recovery rate of overgrazed lichen communities has value to mangers of lands in northern regions. We describe lichen community composition and present recovery rate measurements for a 12-year period following overgrazing by reindeer (<i>Rangifer tarandus</i>) on Hagemeister Island, Alaska. Reindeer were removed from the island in 1993 following overgrazing and average total lichen biomass increased from 504.2 kg/ha (SD 205.4) in 2003 to 795.3 (SD 489.6) in 2015. We estimate time to recovery with three competing growth curves which estimate grazeable biomass may be reached in 34-41 years. However, estimates of full recovery to climax biomass varied among the models, ranging from 71 to 400 years. In 2015, lichen communities were composed of various mixtures of at least 78 lichen taxa, and were dominated by <i>Cladina stygia</i> and other important reindeer forage species. While reindeer overgrazing diminished forage quantity, it did not extirpate preferred forage taxa.</p>
Supplementary material 2 from: Kodada J, Jäch MA, Freitag H, Čiamporová-Zaťovičová Z, Goffová K, Selnekovič D, Čiampor Jr F (2020) Ancyronyx lianlabangorum sp. nov., a new spider riffle beetle from Sarawak, and new distribution records for A. pulcherrimus Kodada, Jäch & Čiampor based on DNA barcodes (Coleoptera, Elmidae). ZooKeys 1003: 31-55. https://doi.org/10.3897/zookeys.1003.55541
Table S2. DNA barcoding patterns of the variable nucleotide positions in the 648 bp long COI sequence alignment of the Ancyronyx pulcherrimus clade.
Supplementary material 2 from: Kalki Y, Gowda S, Agnivamshi M, Singh K, Patel H, Mirza ZA (2020) On the taxonomy and systematics of the recently described Lycodon deccanensis Ganesh, Deuti, Punith, Achyuthan, Mallik, Adhikari, Vogel, 2020 (Serpentes, Colubridae) from India. Evolutionary Systematics 4(2): 109-118. https://doi.org/10.3897/evolsyst.4.60570
ML phylogeny of selected members of the family Colubriade based on 1110 bp of mitochondrial cytochrome be gene reconstructed with IQ-TREE online portal
Supplementary material 4 from: Kalki Y, Gowda S, Agnivamshi M, Singh K, Patel H, Mirza ZA (2020) On the taxonomy and systematics of the recently described Lycodon deccanensis Ganesh, Deuti, Punith, Achyuthan, Mallik, Adhikari, Vogel, 2020 (Serpentes, Colubridae) from India. Evolutionary Systematics 4(2): 109-118. https://doi.org/10.3897/evolsyst.4.60570
BI phylogeny of selected members of the family Colubriade based on 1110 bp of mitochondrial cytochrome be gene reconstructed with MrBayes
Supplementary material 3 from: Kalki Y, Gowda S, Agnivamshi M, Singh K, Patel H, Mirza ZA (2020) On the taxonomy and systematics of the recently described Lycodon deccanensis Ganesh, Deuti, Punith, Achyuthan, Mallik, Adhikari, Vogel, 2020 (Serpentes, Colubridae) from India. Evolutionary Systematics 4(2): 109-118. https://doi.org/10.3897/evolsyst.4.60570
ML phylogeny of selected members of the family Colubriade based on 1110 bp of mitochondrial cytochrome be gene reconstructed with RAXML
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.