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Fig. 6 in Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes
Fig. 6 Correlations of diversity indices obtained with microscopy and HTS. All correlations are significant and follow linear models (see Table 1)
Fig. 2 in Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes
Fig. 2 Correlation between both distance matrices (Bray-Curtis distances) calculated between diatom compositions of samples obtained with microscopy and HTS
Fig. 5 in Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes
Fig. 5 Comparison of diversity indices obtained with microscopy and HTS. Classes boundaries for α diversity: c1 <0.675 ≤ c2 <1.100 ≤ c3 <1.525 ≤ c4 <1.950 ≤ c5 <2.375 ≤ c6 <2.800 ≤ c7 <3.225 ≤ c8 <3.650 ≤ c9 <4.075 ≤ c10. For β diversity: c1 <0.7 ≤ c2 <0.8 ≤ c3 <0.9 ≤ c4 <1.0 ≤ c5 <1.1 ≤ c6 <1.2 ≤ c7 <1.3 ≤ c8 <1.4 ≤ c9 <1.5 ≤ c10. For ϒ diversity: c1 <1.04 ≤ c2 <1.48 ≤ c3 <1.92 ≤ c4 <2.36 ≤ c5 <2.80 ≤ c6 <3.24 ≤ c7 <3.68 ≤ c8 <4.12 ≤ c9 <4.56 ≤ c10
Supplementary phylogenetic trees of Babesia bigemina based on partial sequences of both genes Rap-1a and gp45, with SH-aLRT support values (%), aBayes support, and ultrafast bootstrap support (%).
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Fluorescence-activated droplet sequencing (FAD-seq) directly provides sequences of screening hits in antibody discovery
<p>Contains source datas (e.g. uncropped gels, FASTQ nanopore sequences, numeric data) and the python scripts for Fluorescence-activated droplet sequencing (FAD-seq) publication</p>
Alignment of ITS sequences of Erysiphe specimens from Koelreuteria hosts, with Golovinomyces spp. as outgroup. The scientific names are followed by the respective GenBank accession number.
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Fig. 7 in Analysis of major sperm proteins in two nematode species from two classes, Enoplus brevis (Enoplea, Enoplida) and Panagrellus redivivus (Chromadorea, Rhabditida), reveals similar localization, but less homology of protein sequences than expected for Nematoda phylum
Fig. 7 Immunolocalization of MSP in E. brevis sperm. a Immature spermatozoon from male. MSP is diffusely distributed in cytoplasm and concentrated in large granules (scale bar 10 µm). b Spermatozoon recovered from male and partially activated by 10-min incubation in sea water. MSP undergoes transformation resulting in appearance of
Fig. 5 in Analysis of major sperm proteins in two nematode species from two classes, Enoplus brevis (Enoplea, Enoplida) and Panagrellus redivivus (Chromadorea, Rhabditida), reveals similar localization, but less homology of protein sequences than expected for Nematoda phylum
Fig. 5 Western blot analysis of MSP in E. brevis. a MSP has unusual mobility in gel and is found as protein with weight 36–38 kDa. Both male and female samples reveal MSP signal, because the latter include inseminated females. α-Tubulin was used as a loading control (approximate weight 55 kDa). b Peptide competition assay confirms reactivity of anti-MSP antibodies with protein band of 36–38 kDa
Fig. 2 in Analysis of major sperm proteins in two nematode species from two classes, Enoplus brevis (Enoplea, Enoplida) and Panagrellus redivivus (Chromadorea, Rhabditida), reveals similar localization, but less homology of protein sequences than expected for Nematoda phylum
Fig. 2 Western blot analysis of MSP in P. redivivus. In adult animals, MSP is detected as double band with approximate weight 15 and 16 kDa. a Both male and female samples reveal MSP signal, because the latter include mated females. α-Tubulin was used as a loading control (approximate weight 55 kDa). b Analysis of young males and females. MSP is not detected in females, because most of them are unmated. Abbreviations: m, males; f, females
Fig. 3 in Analysis of major sperm proteins in two nematode species from two classes, Enoplus brevis (Enoplea, Enoplida) and Panagrellus redivivus (Chromadorea, Rhabditida), reveals similar localization, but less homology of protein sequences than expected for Nematoda phylum
Fig. 3 Schematic representation of P. redivivus spermatozoa based on transmission electron microscopy. a Morphology of immature and mature spermatozoa. Immature spermatozoon is an unpolarized cell with nucleus devoid of nuclear envelope, mitochondria, and membranous organelles. Mature spermatozoon in female reproductive system is a bipolar cell with anterior pseudopodium and posterior main cell body containing chromatin, mitochondria, and membranous organelles that attached to cell membrane and open to the exterior via pores. Reproduced from Zograf (2014) with the permission from copyright holder (Russian Journal of Nematology). b Chain of conjugated mature spermatozoa in female reproductive system. Abbreviations: N, nucleus; mt, mitochondria; mo, membranous organelles; ch, nuclear chromatin; ps, pseudopodium; mcb, mail cell body
Fig. 1 in Analysis of major sperm proteins in two nematode species from two classes, Enoplus brevis (Enoplea, Enoplida) and Panagrellus redivivus (Chromadorea, Rhabditida), reveals similar localization, but less homology of protein sequences than expected for Nematoda phylum
Fig. 1 Phylogeny of nematodes and MSP-based sperm motility. Phylogenetic relationships within phylum Nematoda derived primarily from SSU rDNA sequence data are given according to De Ley and Blaxter (2002). Suborders of the order Rhabditida, in which representatives highly homologous MSPs are found at DNA, RNA, or protein levels, are marked by underlining. Taxa whose species used in this study are marked with asterisks. Orders Trefusi- ida, Isolaimida, Dioctophyma- tida, Muspiceida, Marimermith- ida, and Desmoscolecida are not shown in this tree
Fig. 8 in Analysis of major sperm proteins in two nematode species from two classes, Enoplus brevis (Enoplea, Enoplida) and Panagrellus redivivus (Chromadorea, Rhabditida), reveals similar localization, but less homology of protein sequences than expected for Nematoda phylum
Fig. 8 Putative MSPs those are most similar to peptide antigen. a P. redivivus MSPs aligned with peptide antigen. Protein sequences (Pan_g61.t1, Pan_g6018.t1, Pan_g6424.t1, Pan_g9068.t1, Pan_ g19433.t1, and Pan_g21178.t1) were found by Blast using peptide
Fig. 4 in Analysis of major sperm proteins in two nematode species from two classes, Enoplus brevis (Enoplea, Enoplida) and Panagrellus redivivus (Chromadorea, Rhabditida), reveals similar localization, but less homology of protein sequences than expected for Nematoda phylum
Fig. 4 Immunolocalization of MSP in P. redivivus sperm. a Immature spermatozoa extracted from male. MSP localizes in granules. In some cells, MSP has strongest signals in the periphery (arrowheads) (scale bar 10 µm). b Chain of mature spermatozoa extracted from female.
FIGURE 4 in First occurrence of Gracilaria chilensis, and distribution of Gracilariopsis lemaneiformis (Gracilariaceae, Gracilariales) in Peru on the basis of rbcL sequence analysis
FIGURE 4. Phylogenetic tree based on rbcL sequences inferred from a maximum-likelihood analysis as implemented by RAxML. Taxa highlighted in red were newly sequenced for this study. GenBank numbers are listed after each taxon. Bootstrap proportions (>50%) for ML (1000 replicates, Left) and Bayesian Posterior Probability (Right) are shown at the nodes. Full support denoted as *.
FIGURE 3 in First occurrence of Gracilaria chilensis, and distribution of Gracilariopsis lemaneiformis (Gracilariaceae, Gracilariales) in Peru on the basis of rbcL sequence analysis
FIGURE 3. Habit of a female gametophyte of Gracilariopsis lemaneiformis from San Andres, Ica, Peru (IMARPE 05-000325).
FIGURE 2 in First occurrence of Gracilaria chilensis, and distribution of Gracilariopsis lemaneiformis (Gracilariaceae, Gracilariales) in Peru on the basis of rbcL sequence analysis
FIGURE 2. Habit of non-reproductive specimens of Gracilaria chilensis from Morro Sama, Peru. Fig. 2A. IMARPE 05-000326-1. Fig. 2B. IMARPE 05-000326-2.
FIGURE 1 in First occurrence of Gracilaria chilensis, and distribution of Gracilariopsis lemaneiformis (Gracilariaceae, Gracilariales) in Peru on the basis of rbcL sequence analysis
FIGURE 1. Distribution map of terete Gracilariaceae from Peru. Occurrence of Gracilariopsis lemaneiformis along the northern and central coast: Paita (Piura), Eten (Lambayeque), Ancon and Chorrillos (Lima), and San Andres (Ica). Also, Gracilaria chilensis from the southern coast (Sama, Tacna).
FIGURE 2 in Is Ronnbergia (Bromeliaceae, Bromelioideae) a geographically disjunct genus? Evidence from morphology and chloroplast DNA sequence data
FIGURE 2. Majority rule consensus tree from the BI analysis of the "total evidence" dataset from morphological and molecular data. Black lines represent the branches that remained identical in the strict consensus tree of the MP analysis. Grey lines represent branches obtained only in the BI analysis. Numbers in the nodes correspond to posterior probabilities and bootstrap values (PP/BT); dashes (-) represent low (<50%) or no BT support.
FIGURE 1 in Is Ronnbergia (Bromeliaceae, Bromelioideae) a geographically disjunct genus? Evidence from morphology and chloroplast DNA sequence data
FIGURE 1. Comparison of the phylogenetic hypothesis provided by the independent morphological and molecular datasets. Species of Ronnbergia are highlighted in red. A. Strict consensus of the four most parsimonious trees from the MP analysis of morphological data. Numbers in the nodes correspond to bootstrap values. B. Majority rule consensus tree from the BI analysis of the molecular dataset. Numbers in the nodes correspond to posterior probabilities and bootstrap values (PP/BT); dashes (-) represent low (<50%) or no BT support.
FIGURE 3 in Is Ronnbergia (Bromeliaceae, Bromelioideae) a geographically disjunct genus? Evidence from morphology and chloroplast DNA sequence data
FIGURE 3. Geographic distribution of the three clades containing species of Ronnbergia. Data points were obtained from the Global Biodiversity Information Facility—GBIF (www.gbif.org).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.