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3,584
datasets available to search
ShareScore release 0.9.0
Dataset results
3,584 results for “genomic analysis”
Fetal cartilage selective genes identified in a genome-scale analysis
GEO Series GSE6565. Homo sapiens. 14 samples. Type: Expression profiling by array.
Genome-wide differential methylation analysis of ovarian cancer and normal tissue samples
GEO Series GSE180292. Homo sapiens. 8 samples. Type: Methylation profiling by high throughput sequencing.
Identif. of oscillatory genes in somitogenesis from functional genomic analysis of C2C12 myoblast line
GEO Series GSE7012. Mus musculus. 13 samples. Type: Expression profiling by array.
Global transcriptional analysis and genome-wide analysis of chromatin state in extended pluripotent stem cells, primed pluripotent stem cells, and naïve pluripotent stem cells
GEO Series GSE89303. Homo sapiens; Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide location analysis of FLAG-H2BE
GEO Series GSE39517. Mus musculus. 1 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Genome-wide DNA methylation analysis using next generation sequencing to reveal candidate genes responsible for boar taint in pigs
GEO Series GSE129385. Sus scrofa. 9 samples. Type: Methylation profiling by high throughput sequencing.
Genome-wide enhancer analysis reveals the role of AP-1 transcription factor in head and neck squamous cell carcinoma [ChIP-Seq]
GEO Series GSE172321. Mus musculus. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide analysis revealed a crosstalk between p53 and the pluripotent gene networks in mouse embryonic stem cells (expression)
GEO Series GSE26360. Mus musculus. 18 samples. Type: Expression profiling by array.
Childhood Cancer Data Initiative (CCDI): Genomic Analysis in Pediatric Malignancies
Pediatric solid tumors are highly heterogeneous, encompassing a large number of histotypes. The genomic landscape of these diseases is characterized by few single-nucleotide variants (SNVs) compared to adult cancers. In contrast, many exhibit a high prevalence of structural or epigenetic changes that alter gene expression, underlining the need for comprehensive genomic approaches such as whole-genome sequencing (WGS). Several studies have specifically addressed the clinical utility of genomic analysis in the pediatric and AYA cancer setting. Review of these studies point to key challenges that must be addressed in order to advance the routine use of genomics in this population.
The Genomic Analysis of Medulloblastoma
Medulloblastoma is a heterogenous disease made up of at least four distinct subtypes of disease which appear to exploit and disrupt naturally occurring developmental pathways of cellular growth and hindbrain development. To better understand the driver mutations of this disease, we performed whole genome sequencing of 37 medulloblastomas and the corresponding normal DNA of the 37 affected children treated at St. Jude Children's Research Hospital. We have found several novel mutations which appear subtype specific. These mutations were checked for frequency in a separate tumor cohort of 56 children with medulloblastoma, also treated on the St. Jude Medulloblastoma 2003 trial, and were tested in several animal models of medulloblastoma for proof of oncogenic potential.
Genome-wide analysis of effects of ARID1A depletion in mouse embryonic stem cells
GEO Series GSE183278. Mus musculus. 166 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide analysis of mRNA polyadenylation in Cortex/Striatum of CPEB4 modified mice [I]
GEO Series GSE113838. Mus musculus. 18 samples. Type: Expression profiling by array.
Genome wide analysis of Open Chromatin Regions in memory OT-I cells
GEO Series GSE152392. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide analysis of gene expression patterns in human prostate cancer (PCa)
GEO Series GSE69223. Homo sapiens. 30 samples. Type: Expression profiling by array.
Systematic meta-analysis and replication of genome-wide expression studies of Parkinson's disease: 3
GEO Series GSE20164. Homo sapiens. 11 samples. Type: Expression profiling by array.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (RNA-Seq II)
GEO Series GSE215043. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide DNA Methylation and Transcriptome Analysis of Non-invasive and Invasive Melanoma Cell Lines
GEO Series GSE153595. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Genome-wide analysis of circular RNAs in Goat skin fibroblast cells (GSF cells) in response to Orf virus infection
GEO Series GSE121725. Capra hircus. 6 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Genome-wide analysis of mRNA polyadenylation in prefrontal cortex of idiopathic ASD patients
GEO Series GSE113834. Homo sapiens. 27 samples. Type: Expression profiling by array.
Whole genome bisulfite sequencing analysis to examine the effect of the iron chelator deferoxamine on DNA methylation levels in 3T3-L1 pre-adipocyte cells
GEO Series GSE174134. Mus musculus. 15 samples. Type: Methylation profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.