Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
11,105
datasets available to search
ShareScore release 0.9.0
Dataset results
11,105 results for “single cells”
Single cell gene expression profile of CD11c-enriched fraction of dissociated mouse lung immune cells
GEO Series GSE214177. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Bulk and single-cell RNA-seq of mouse blastocyst, blastoid Trophoblast stem cells and Embryonic stem cells
GEO Series GSE99786. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Refining Colorectal Cancer Classification and Clinical Stratification Through a Single-Cell Atlas
GEO Series GSE200997. Homo sapiens. 23 samples. Type: Expression profiling by high throughput sequencing.
Single Cell Transcriptomic Analysis of Human Pluripotent Stem Cell Chondrogenesis [bulk RNA-seq]
GEO Series GSE160786. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing.
scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues
GEO Series GSE305889. Homo sapiens; Mus musculus. 177 samples. Type: Other; Expression profiling by high throughput sequencing.
Robust single-cell DNA methylome profiling with snmC-seq2
GEO Series GSE112471. Homo sapiens; Mus musculus. 249 samples. Type: Methylation profiling by high throughput sequencing.
Integrated transcriptomic and epigenomic profiling of mouse lung cells at the single-cell level
GEO Series GSE284046. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Gene expression profile at single cell level of adipocyte progenitors from subcutaneous inguinal adipose depots
GEO Series GSE225624. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Transcriptional dissection by single-cell RNASeq analysis of the metastasis settings from a highly metastatic Patient-Derived Xenograft model of pancreatic ductal adenocarcinoma
GEO Series GSE114704. Homo sapiens. 70 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNA-seq of colonic tumors from epithelial HO-1 knockout and control mice in a colitis-associated cancer model
GEO Series GSE312733. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
TREM2 regulates microglial cholesterol metabolism upon chronic phagocytic challenge [single-cell RNA-Seq]
GEO Series GSE130626. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Single cell transcriptional profiling of cultured developing neurons upon inflammatory challenge [in vivo]
GEO Series GSE180344. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin
GEO Series GSE97213. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single-cell multi-modal profiling of proteins and chromatin accessibility using PHAGE-ATAC [Spike_mix_pbmcs]
GEO Series GSE172920. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regenerati
GEO Series GSE215987. Danio rerio. 4 samples. Type: Other.
Single-cell RNA transcriptomics of thymic iNKT cells from BALB/c and Cd80/Cd86 -/- (B7KO) mice
GEO Series GSE198967. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Fibroblast heterogeneity revealed by single cell sequencing in healthy and atherosclerotic arteries
GEO Series GSE196395. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
NASC-seq monitors RNA synthesis in single cells
GEO Series GSE128273. Homo sapiens. 784 samples. Type: Expression profiling by high throughput sequencing.
Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation [bulk RNA-Seq]
GEO Series GSE96811. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNA-sequence of the resolution phase of lung inflammation in LPS-induced ARDS model
GEO Series GSE268245. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.