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3,878 results for “Molecular Data”
FIGURE 1 in A systematic assessment of Leporinus tigrinus (Characiformes: Anostomidae) using morphological and molecular data
FIGURE 1. Scatter plot of sheared Principal Component Analysis (PCA) in Leporinus tigrinus.
Figure 2 in Synonymy of the water mite subgenera Orientmomonia and Kondia in the genus Momonia (Momoniidae, Acari): an evaluation based on morphology and molecular data
Figure 2 Dorsal aspect of the unmountedMomoniaspecies. A – male of Momonia(Orientmomonia) koreana; B – female of Momonia(Kondia) sp. Scale bar: 200 μm.
source data for "Dissecting the role of hydroxyl moiety at C14 in (+)-opioid based TLR4 antagonists via wet-lab experiments and molecular dynamics simulations"
Open the record for dataset details and reuse information.
Figs 7–12 in A new Diplura species from Georgia caves, Plusiocampa (Plusiocampa) imereti (Diplura, Campodeidae), with morphological and molecular data
Figs 7–12. Plusiocampa (Plusiocampa) imereti Sendra & Barjadze sp. nov., ♀, holotype (IZISU- TD-T-00001). 7. Urotergites I–IX. 8. First urosternite of the male, lateral side. 9. Macrosetae of first urosternite of the male. 10. Detail of sixth urotergite. 11. Detail of six urosternite. 12. Eight urosternite of male. a 1 = glandular setae on distal portion of appendages.
Figure 3 from: Zhao W-Y, Jiang K-W, Chen Z-X, Tian B, Fan Q (2021) Lespedeza danxiaensis (Fabaceae), a new species from Guangdong, China, based on molecular and morphological data. PhytoKeys 185: 43-53. https://doi.org/10.3897/phytokeys.185.72788
Figure 3 Lespedeza danxiaensis Q. Fan, W.Y. Zhao & K.W. Jiang and L. pilosa (Thunb.) Siebold & Zucc. L. danxiaensis (A–J) A habit, bushwood on the mountaintop of Danxia landform B plant, stems procumbent C adaxial view of leaf, surface green, leather D abaxial view of one leaflet, surface greyish-green with densely pubescent E flowering branchlet with flower bud, stipule triangular-lanceolate, apex acute F front view of flower G lateral view of flower, bracteoles long ovate, sepals narrowly lanceolate H fruiting branchlet, show the long peduncles I fruit, densely pubescent, stamens persistent J flowering branchlet, peduncles usually longer than 1 cm, flower pink to pale purple, young branch reddish brown L. pilosa (K–L) K branchlet with unripe fruit, leaf papery L flowering branchlet, peduncles short, flower white, young branch green. (Photographs: A-J by Qiang Fan K–L by Kai-Wen Jiang).
Figure 4 from: Zhao W-Y, Jiang K-W, Chen Z-X, Tian B, Fan Q (2021) Lespedeza danxiaensis (Fabaceae), a new species from Guangdong, China, based on molecular and morphological data. PhytoKeys 185: 43-53. https://doi.org/10.3897/phytokeys.185.72788
Figure 4 Lespedeza danxiaensis Q. Fan, W.Y. Zhao & K.W. Jiang A upper portion of plant B lower portion of plant C chasmogamous flower D cleistogamous flower E staminal tube F pistil G standard H wing-petal I keel-petal J chasmogamous fruit K abaxial view of calyx, flattened L bracts M bracteoles. (Drawn by Rong-En Wu).
Figure 2 from: Zhao W-Y, Jiang K-W, Chen Z-X, Tian B, Fan Q (2021) Lespedeza danxiaensis (Fabaceae), a new species from Guangdong, China, based on molecular and morphological data. PhytoKeys 185: 43-53. https://doi.org/10.3897/phytokeys.185.72788
Figure 2 Phylogenetic relationships amongst 33 species of Lespedeza and Campylotropis macrocarpa based on ITS sequences using Maximum Likelihood analysis, bootstrap value of the Maximum Likelihood (LP) are shown along the branches. The new species described in this study is shown in bold and red type.
Figure 1 from: Zhao W-Y, Jiang K-W, Chen Z-X, Tian B, Fan Q (2021) Lespedeza danxiaensis (Fabaceae), a new species from Guangdong, China, based on molecular and morphological data. PhytoKeys 185: 43-53. https://doi.org/10.3897/phytokeys.185.72788
Figure 1 Satellite image for the location of Lespedeza danxiaensis Q. Fan, W.Y. Zhao & K.W. Jiang.
Data from: Molecular signatures of reticulate evolution within the complex of European pine taxa
<p>Speciation mechanisms, including the role of interspecific gene flow and introgression in emergence of new species, are the major focus of evolutionary studies. Inference of taxonomic relationship between closely related species maybe challenged by past hybridization events, but at the same time it may provide new knowledge about mechanisms responsible for the maintenance of species integrity despite interspecific gene flow. Here, using nucleotide sequence variation and utilizing a coalescent modelling framework, we tested the role of hybridization and introgression in the evolutionary history of closely related pine taxa from <i>Pinus mugo</i> complex and <i>P. sylvestris</i>. We compared the patterns of polymorphism and divergence between taxa and found great overlap of neutral variation within <i>P. mugo</i> complex. Our phylogeny reconstruction indicated multiple instances of reticulation events in the past, suggesting an important role of interspecific gene flow in the species divergence. The best fitting model revealed <i>P. mugo</i> and <i>P. uncinata</i> as sister species with basal <i>P. uliginosa</i> and asymmetric migration between all investigated species after their divergence. The magnitude of interspecies gene flow differed greatly, and it was consistently stronger from representatives of <i>P. mugo</i> complex to <i>P. sylvestris</i> than in the opposite direction. The results indicate the prominent role of reticulation evolution in those forest trees and provide genetic framework to study species integrity maintained by selection and local adaptation.</p>
Figure 2 in Molecular and phenotypic data reveal a new Amazonian species of pit vipers (Serpentes: Viperidae: Bothrops)
Figure 2. Bothrops oligobalius sp. nov. from French Guiana. Photo by Maël Dewynter.
FIGURE 4 in A new species of Tetrataenium (Tordyliinae, Apiaceae) from SW Yunnan, China, based on morphological and molecular data
FIGURE 4. Distribution map of the four populations of Tetrataenium mianguaqi.
FIGURE 1 in Morphology and molecular data of the species of Suillus (Suillaceae, Boletales) associated with Pinus sibirica at the European northeast of Russia
FIGURE 1. Geographical location of the study area.
Inference of molecular mechanisms of transcriptional regulation from co-expression data
<p>The accompanying data for the article "Inference of molecular mechanisms of transcriptional regulation from co-expression data". The article is now live on Research Square <a href="https://doi.org/10.21203/rs.3.rs-1262163/v1">10.21203/rs.3.rs-1262163/v1</a></p>
FIGURE 4 in A new subgenus of Sonchus (Asteraceae: Cichorieae) inferred from molecular data
FIGURE 4. Sonchus erzincanicus (Güzel 688 & Gültepe). Herbarium specimen.
Identification of species by combining molecular and morphological data using convolutional neural networks
<p>Integrative taxonomy is central to modern taxonomy and systematic biology, including behavior, niche preference, distribution, morphological analysis, and DNA barcoding. However, decades of use demonstrate that these methods can face challenges when used in isolation, for instance, potential misidentifications due to phenotypic plasticity for morphological methods, and incorrect identifications because of introgression, incomplete lineage sorting, and horizontal gene transfer for DNA barcoding. Although researchers have advocated the use of integrative taxonomy, few detailed algorithms have been proposed. Here, we develop a convolutional neural network method (morphology-molecule network [MMNet]) that integrates morphological and molecular data for species identification. The newly proposed method (MMNet) worked better than four currently available alternative methods when tested with 10 independent data sets representing varying genetic diversity from different taxa. High accuracies were achieved for all groups, including beetles (98.1% of 123 species), butterflies (98.8% of 24 species), fishes (96.3% of 214 species), and moths (96.4% of 150 total species). Further, MMNet demonstrated a high degree of accuracy (<i>></i>98%) in four data sets including closely related species from the same genus. The average accuracy of two modest subgenomic (single nucleotide polymorphism) data sets, comprising eight putative subspecies respectively, is 90%. Additional tests show that the success rate of species identification under this method most strongly depends on the amount of training data, and is robust to sequence length and image size. Analyses on the contribution of different data types (image vs. gene) indicate that both morphological and genetic data are important to the model, and that genetic data contribute slightly more. The approaches developed here serve as a foundation for the future integration of multimodal information for integrative taxonomy, such as image, audio, video, 3D scanning, and biosensor data, to characterize organisms more comprehensively as a basis for improved investigation, monitoring, and conservation of biodiversity.</p>
Data related to: "Molecular Interaction Properties of the 90-231 Segment of PrP-E200K: a Multilayered Computational Study"
<p>3D coordinates of all d1-d5 structures in the pdb file format</p>
Supplementary material 2 from: Li Y, Luo X, Zhang J, Wang Z, Che Y (2022) A new species of Bundoksia Lucañas, 2021 with comments on its subfamilial placement, based on morphological and molecular data. ZooKeys 1085: 145-163. https://doi.org/10.3897/zookeys.1085.72927
Table S2
Supplementary material 4 from: Li Y, Luo X, Zhang J, Wang Z, Che Y (2022) A new species of Bundoksia Lucañas, 2021 with comments on its subfamilial placement, based on morphological and molecular data. ZooKeys 1085: 145-163. https://doi.org/10.3897/zookeys.1085.72927
Figure S1
Supplementary material 1 from: Li Y, Luo X, Zhang J, Wang Z, Che Y (2022) A new species of Bundoksia Lucañas, 2021 with comments on its subfamilial placement, based on morphological and molecular data. ZooKeys 1085: 145-163. https://doi.org/10.3897/zookeys.1085.72927
Table S1
Figure 7 from: Li Y, Luo X, Zhang J, Wang Z, Che Y (2022) A new species of Bundoksia Lucañas, 2021 with comments on its subfamilial placement, based on morphological and molecular data. ZooKeys 1085: 145-163. https://doi.org/10.3897/zookeys.1085.72927
Figure 7 Maximum Likelihood (ML) tree of cockroaches inferred from four mitochondrial markers 12S rRNA, 16S rRNA, COI, COII and two nuclear markers 28S rRNA, 18S rRNA. Branch support labels are as follows: bootstrap supports of the Maximum-Likelihood tree/Bayesian posterior probabilities of the Bayesian tree; (*) indicate the branch label of given analysis is maximal (i.e. MLB = 100 or BPP = 1.0), (-) means the node is absent for the given analysis.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.