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4,144 results for “ITS barcode”
Figure 2 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Figure 2 Neighbor-joining (NJ) topology of the analyzed isopod species based on Kimura 2-parameter distances. Triangles show the relative number of individual's sampled (height) and sequence divergence (width). Red triangles highlight terrestrial species with intraspecific maximum pairwise distances > 2.2%, whereas dark blue triangles indicate freshwater species with such distances. Numbers next to nodes represent non-parametric bootstrap values > 90% (1,000 replicates). Asterisks indicate species not recorded in Germany.
Figure 20 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figure 20 Distribution map for BOLD records for BIN: BOLD:ADB0898 (Melanagromyza Mit-9) and BIN (BOLD:ADB9391) (Nemorimyza Mit-2). Distribution data points include Guanacaste, Costa Rica and Mitaraka, French Guiana (created with SimpleMappr).
Figure 19 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figure 19 Distribution map for BOLD records for BIN: BOLD:ACJ8134 (Melanagromyza Mit-4). Distribution data points include Guanacaste, Costa Rica; Formosa, Argentina and Mitaraka, French Guiana (created with SimpleMappr).
Figure 15-16 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figure 15-16 15Nemorimyza Mit-1 BUICD1564–19, head dorsal view 16Nemorimyza Mit-2 MOBIL8769–18, head latero-dorsal view.
Figure 17-18 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figure 17-18 17Cerodontha Mit-1, lateral view 18Cerodontha nigrihalterata Boucher, paratype, lateral view.
Figures 13- 14 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figures 13- 14 Melanagromyza Mit-10. 13 specimen BUICD1539–19, head dorsal view 14 specimen BUICD1540–19, head antero-dorsal view.
Figures 2-7 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figures 2-7 (2–4) Melanagromyza Mit-2. (5–7) Melanagromyza Mit-4. 2 specimen BUICD1441–18, lateral view 3 specimen BUICD1444–18, lateral view 4 Arista showing short pubescence 5 Arista showing long pubescence 6 specimen BUIC1447–18, lateral view 7 specimen BUIC1445–18, lateral view.
Figures 8-12 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figures 8-12 (8–10) abdomen (color variation) of Melanagromyza Mit-2. 8 specimen BUICD1440–18; 9 specimen BUICD1443–18 10 specimen BUICD1441–18 (11, 12) midtibial bristles (number variation) of Melanagromyza Mit-2. 11 specimen BUICD1441–18 12 specimen BUICD1444–18.
Figure 1 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figure 1 Neighbor-joining tree based on K2P-distance of the 24 specimens of Mitaraka Agromyzidae for which a sequence over 400 bp were retrieved. Information includes specimen number (from Table 1), BOLD process ID, morphospecies name, BIN number and sex. Color text is used when more than one Mitaraka specimen were clustering together in the same BIN.
Fig. 12. Aphelopus malayanus Olmi, 1984 in DNA barcoding of Aphelopus Dalman (Hymenoptera, Dryinidae) from China, with descriptions of four new species
Fig. 12. Aphelopus malayanus Olmi, 1984, ♂ (SCAU 3040507). A. Habitus, dorsal view. B. Habitus, lateral view. C. Head and mesosoma, dorsal view. D. Head and mesosoma, lateral view.
Fig. 11. Aphelopus maculiceps Bergman, 1957 in DNA barcoding of Aphelopus Dalman (Hymenoptera, Dryinidae) from China, with descriptions of four new species
Fig. 11. Aphelopus maculiceps Bergman, 1957, ♂ (SCAU 3011637). A. Habitus, lateral view. B. Head and mesosoma, lateral view. C. Head and mesosoma, dorsal view. D. Head, frontal view.
Supplementary material 4 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure S2. NJ tree for the tribes Haematopotini and Heptatomini
Figure 3 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure 3 ML phylogenetic tree for the tribes Haematopotini and Heptatomini based on COI sequences of specimens sampled in this work and congeneric sequences from BOLD database of public records. The clades corresponding to MOTUs (as determined by species delimitation methods) are collapsed for simplicity; numbers on the nodes denote ML aLRT support (values lower than 0.70 are not shown). MOTUs containing sequences obtained in this study are marked in blue; the results of the species delineation methods for the newly sequenced samples are presented as vertical bars beside the respective MOTU clades (bPTP in red; ABGD in green; ASAP in yellow; classification into BOLDBINs as assigned by BIN-RESL, with newly established BINs marked in bold font).
Supplementary material 3 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure S1. NJ tree for the tribe Chrysopsini
Figure 2 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure 2 Maximum likelihood (ML) phylogenetic tree for the tribe Chrysopsini based on COI sequences of specimens sampled in this work and congeneric sequences from BOLD database of public records. The clades corresponding to MOTUs (as determined by species delimitation methods) are collapsed for simplicity; numbers on the nodes denote ML aLRT support (values lower than 0.70 are not shown). MOTUs containing sequences obtained in this study are marked in red; the results of the species delineation methods for the newly sequenced samples are presented as vertical bars beside the respective MOTU clades (bPTP in red; ABGD in green; ASAP in yellow; classification into BOLDBINs as assigned by BIN-RESL).
Supplementary material 5 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure S3. NJ tree for the tribes Tabanini and Diachlorini
Supplementary material 2 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
COI multiple sequence alignments
Figure 4 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure 4 ML phylogenetic tree for the tribes Tabanini and Diachlorini based on COI sequences of specimens sampled in this work and congeneric sequences from BOLD database of public records. The clades corresponding to MOTUs (as determined by species delimitation methods) are collapsed for simplicity; numbers on the nodes denote ML aLRT support (values < 0.70 are not shown). MOTUs containing sequences obtained in this study are marked in green; the results of the species delineation methods for the newly sequenced samples are presented as vertical bars beside the respective MOTU clades (bPTP in red; ABGD in green; ASAP in yellow; classification into BOLDBINs as assigned by BIN-RESL, with newly established BINs marked in bold font).
Figure 1 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure 1 Sampling sites of horseflies (Diptera: Tabanidae) in Croatia: 1 – Branjina, 2 – Desne, 3 – Djedovica (Papuk Mountain), 4 – Donje Maovice, 5 – Kutjevo, 6 – Normanci, 7 – Njivice (Krk Island), 8 – Peruča, 9 – Petrov vrh (Papuk Mountain), 10 – Seona (Našice), 11 – Tugare, 12 – Velika, 13 – Voćin, 14 – Zmajevac. The details about localities can be found in BOLD project CROTA. Acronyms for the countries: HR: Croatia; SLO: Slovenia; HU: Hungary; RS: Republic of Serbia; BH: Bosnia and Herzegovina: IT: Italy.
Fig. 2 in Application Of Dna Barcoding In Taxonomy And Phylogeny: An Individual Case Of Coi Partial Gene Sequencing From Seven Animal Species
Fig. 2. Phylogenetic position of E. roumanicus, Bayesian inference phylogenetic tree. Sequences obtained by us are written in bold.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.