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14,185 results for “phylogenies”
Data from: Defining the pyro-thermal niche: do seed traits, ecosystem type and phylogeny influence thermal thresholds in seeds with physical dormancy
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Revisiting the multispecies coalescent model fit with an example from a complete molecular phylogeny of the Liolaemus wiegmannii species group (Squamata: Liolaemidae)
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Data from: Traces of phylogeny and ecology in hippocampal neuron numbers
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Phylogeny of the Norwegian flora
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EcoPhyloMapper: an R package for integrating geographic ranges, phylogeny, and morphology
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Supplementary data for: DNA sequences are as useful as protein sequences for inferring deep phylogenies
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Fast mvSLOUCH: Model comparison for multivariate Ornstein--Uhlenbeck-based models of trait evolution on large phylogenies
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Data from: A multi-locus plastid phylogeny of the Aulonemia clade (Poaceae: Bambusoideae: Bambuseae: Arthrostylidiinae) reveals three new genera of bamboo
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Deep learning from phylogenies for diversification analyses
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UnFATE: A comprehensive probe set and bioinformatics pipeline for phylogeny reconstruction and multilocus barcoding of filamentous ascomycetes (Ascomycota, Pezizomycotina)
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Data from: A new Paleogene fossil and a new dataset for waterfowl (Aves: Anseriformes) clarify phylogeny, ecological evolution, and avian evolution at the K-Pg boundary
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Incorporating continuous characters in joint estimation of dicynodont phylogeny
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The shape of phylogenies under phase-type distributed times to speciation and extinction
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Data files associated with: Evolution of the mutation spectrum across a mammalian phylogeny
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Fig. 20 in Review of the Asian Thaumastodinae (Coleoptera, Byrrhoidea, Limnichidae), with a phylogeny of the genera
Fig. 20. Most parsimonious tree.
Table S2.- ADC phylogeny data set.
<p>Data set for phylogenetic analysis, we used the Pfam v31.0 database to determine which proteinortho clusters represent the ADC proteins. A total of 37 homologs belonging to alphaproteobacteria sequences were tested with a group of nine external sequences were aligned against Muscle v3.8.31. The resulting dataset containing 46 putative ADC homologs was used to infer the evolutionary relationships. We used ProtTest3 v3.4.2 for the evolutionary model and, the best result was LG+G model; using amino acid alignment. The phylogenetic analysis was performed with PhyML v3.3.20170530 under (-d aa -m LG -a e -o ltr) parameters. </p>
Figure 5 in Recent advances in phylogeny and taxonomy of Near and Middle Eastern Vipers – an update
Figure 5. Daboia palaestinae
Figure 9 in Recent advances in phylogeny and taxonomy of Near and Middle Eastern Vipers – an update
Figure 9. Cerastes gasperettii (hornless)
Figure 4 in Recent advances in phylogeny and taxonomy of Near and Middle Eastern Vipers – an update
Figure 4. Pseudocerastes persicus
Figure 8 in Recent advances in phylogeny and taxonomy of Near and Middle Eastern Vipers – an update
Figure 8. Cerastes gasperettii (horned)
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.