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515
datasets available to search
ShareScore release 0.9.0
Dataset results
515 results for “CoL”
RNA profiling of Col-0 and vil1-1 1-day-old seedlings in Arabidopsis
GEO Series GSE180587. Arabidopsis thaliana. 6 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide maps of chromatin state in Col-0, jmj28 mutant, and atx1/2 mutant [Histone ChIP-seq]
GEO Series GSE188134. Arabidopsis thaliana. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Global gene-expression profiles of wild type (WT; Columbia-0; Col) and hag1 in the course of de novo shoot regeneration
GEO Series GSE100966. Arabidopsis thaliana. 8 samples. Type: Expression profiling by high throughput sequencing.
Gene expression study of 21d old Col-0 and tpt-2 shifted at the end of night to 500µmol photons m-2 s-1 for 9h and 18h
GEO Series GSE196053. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Small RNA sequencing of msh1 memory line and with isogenic Col-0 wild-type control in Arabidopsis
GEO Series GSE134028. Arabidopsis thaliana. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
RNA-Seq analysis comparing gene expression changes between Col-0 wild-type (WT) and sig2-2 mutant lines at the whole genome level
GEO Series GSE104518. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
RCO-3 and COL-26 form an external-to-internal module that regulates the dual-affinity glucose transport system in Neurospora crassa
GEO Series GSE157186. Neurospora crassa. 24 samples. Type: Expression profiling by high throughput sequencing.
Comparison of the response of Col-0 and ate1 ate2 N-degron mutant to flg22
GEO Series GSE246173. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Expression data in an Arabidopsis cytokinin-deficient mutant, ipt1,3,5,7 and its wild type plant (Col-0) under high salinity and control conditions.
GEO Series GSE32087. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array.
Arabidopsis buds: dyt1 vs Col; tdf1 vs Col; ams vs Col; ms188 vs Col
GEO Series GSE102528. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array.
Expression data of Arabidopsis wild type Col and mutant pcfs4-1
GEO Series GSE21250. Arabidopsis thaliana. 6 samples. Type: Expression profiling by genome tiling array.
JPSS-2 CrIS IMG_COL: Array indices for collocated VIIRS observations V3.0 (SNDRJ2CrISL1BIMGC) at GES DISC
The Cross-track Infrared Sounder (CrIS) Level 1B Full Spectral Resolution (FSR) data files contain radiance measurements along with ancillary spacecraft, instrument, and geolocation data of the CrIS instrument on the Joint Polar Satellite System-2 (JPSS-2) platform. This platform is also know as NOAA-21 (National Oceanic and Atmospheric Administration). The IMG product supplements the CrIS Level 1B (L1B) hyperspectral radiance product by providing collocated high-spatial resolution data from the Visible Infrared Imaging Radiometer Suite (VIIRS) imager located on the same platform. VIIRS radiance and cloud mask values are grouped and aggregated for every CrIS field of view (FOV) and made available in a format intended for use alongside the CrIS L1B data. The collocated VIIRS level 1 / cloud mask statistical summary (collection name SNDRJ2CrISL1BIMG) is the main product and consists of collocated CrIS field of views with the VIIRS cloud mask and radiances/reflectances. This can be thought of as a match-up between CrIS and VIIRS. The supplementary product, array indices for collocated VIIRS observations (SNDRJ2CrISL1BIMGC), product additionally makes available CrIS and VIIRS data array index values that result from the collocation process that is performed as part of producing IMG. These index values can be leveraged by end users to further augment CrIS data by extracting collocated observations from any additional VIIRS data products that aren’t already present in IMG. The FSR files have 2,223 channels (*2211 apodized channels): 637 (*633) shortwave channels from 3.9 to 4.7 microns (2555 to 2150 cm-1), 869 (*865) midwave channels from 5.7 to 8.05 microns (1752.5 to 1242.5 cm-1), and 717 (*713)longwave channels from 9.1 to 15.41 microns (1096.25 to 648.75 cm-1). Each CrIS field-of-regard (FOR) contains 9 field-of-views (FOVs) arranged in a 3X3 array. The Level 1B files contain 30 FORs in the cross track direction and 45 in the along track direction. Data products are constructed on six minute boundaries. The Visible Infrared Imaging Radiometer Suite (VIIRS) has 22 imaging and radiometric bands covering wavelengths from 0.41 to 12.5 microns. It provides the sensor data records for clouds, sea surface temperature, ocean color, and others. This IMG_COL product contains the colocation indices of the VIIRS pixels within each CrIS footprint.
Expression analysis of Arabidopsis thaliana Col-0 and parg1 with and without PARP inhibitor (3AB, 3MB), with and without MAMP (flg22, elf18)
GEO Series GSE100205. Arabidopsis thaliana. 27 samples. Type: Expression profiling by array.
comparison of powdery mildew-induced gene expression between Col-0 and the edr1 mutant
GEO Series GSE26679. Arabidopsis thaliana. 32 samples. Type: Expression profiling by array.
HTS-Seq analysis of wild type (WT; Col-0), npr1-1, and hac1/5
GEO Series GSE101572. Arabidopsis thaliana. 13 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
MethylC-Seq of Ws background wild-type (WT), ape1l-1 (Ws background), arp-1 (Col-0 background) and zdp-1 (Col-0 background) mutants
GEO Series GSE52983. Arabidopsis thaliana. 4 samples. Type: Methylation profiling by high throughput sequencing.
Transcriptome analysis of Arabidopsis seedlings between Col-0 and OE-SAUR41
GEO Series GSE134117. Arabidopsis. 8 samples. Type: Expression profiling by high throughput sequencing.
Differentially expressed genes in developing seeds of Arabidopsis thaliana accessions Col-0 and C24 - Impact of the exclusion of polymorphic probes via a sequence-based approach
GEO Series GSE94763. Arabidopsis thaliana. 18 samples. Type: Expression profiling by array.
MethlyC-Seq of Col-0 WT, idm3-3 and mbd7-2 (CS876032) mutant
GEO Series GSE59712. Arabidopsis thaliana. 3 samples. Type: Methylation profiling by high throughput sequencing.
Genome-wide expression analysis of Arabidopsis Col-0 plants under different air humidity
GEO Series GSE236463. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.