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4,144 results for “ITS barcode”
Figures 1–4 in Halictus hedini hedini (Hymenoptera: Halictidae) newly recorded from Japan, revealed by DNA barcoding and morphology
Figures 1–4. Photographs of Halictus hedini hedini Blüthgen and H. rubicundus (Christ). 1–2. Lateral habitus of H. hedini hedini (1 female, 2 male). 3–4. 1st metasomal tergum of female (3 H. hedini hedini, 4 H. rubicundus).
Fig. 2 in Chloroplast genome of white wild chrysanthemum, Dendranthema sp. K247003, as genetic barcode
Fig. 2. Comparison of chloroplast genomes of Dendranthema sp. K247003 and D. boreale IT121002 using mVISTA program. Grey arrows and thick black lines above the alignment indicate genes with their orientation and the position of the IRs, respectively. The Yscale represents the percent identity between 50-100%. Genome regions are color-coded: Coding regions in blue; noncoding sequences (CNS) in red.
Fig. 4. A in Survey of Busan Oligochaeta earthworms supported by DNA barcodes
Fig. 4. A. Amynthas masatakae (Beddard, 1892) Busan specimen showing spermathecal and male regions. B. Metaphire ryunome Blakemore, 2012 Busan specimen [boxed is X2 enlargement of its18rhs male pore that appears elevated, non-superficial, i.e.,=Metaphire].
Fig. 2. A. Drawida songae yeongdo subsp. n in Survey of Busan Oligochaeta earthworms supported by DNA barcodes
Fig. 2. A. Drawida songae yeongdo subsp. n. holotype (H, DNA H1) showing prostomium, gizzards, pygidium, habitus with reproductive organs in situ and all four genital marking glands in 8-11lhs plus a nephridium from 15rhs. B. D. songae songae after Hong (2002: fig. 1) with GMs in 7, 10-11 (but not 12?) for fair use comparison.
Fig. 1. MEGA5 in Survey of Busan Oligochaeta earthworms supported by DNA barcodes
Fig. 1. MEGA5 Maximum Likelihood phylogram of DNA code results for Busan specimens compared to similar taxa. Solid squares (■) are Busan samples; open circles (○) are unconfirmed GenBank names (from China, Korea or Japan); closed circles (●) are from the author's Japanese studies. (Sample codes and provisional or new species names are explained in the Appendix legend).
Fig. 5. A in Survey of Busan Oligochaeta earthworms supported by DNA barcodes
Fig. 5. A. Eisenia japonica vaga sub-sp. n. Busan holotype (H, DNA H5). B. Eisenia j. japonica (Michaelsen, 1892) Berlin syntype Nr. 2117 (as anticipated, DNA was not extractable from this older material), author's sketch after Blakemore and Grygier (2011, fig. 2) that compares to Hamburg syntypes V119-V121 (see Blakemore and Grygier, 2011, fig. 3).
Fig. 14 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 14 Phorcus turbinatus (Born, 1778). a PCA plot of PC1 vs. PC2 for genus Phorcus. Phorcus turbinatus (petrol) separates from all other species. b Representative specimen of Ph. turbinatus from this study. c One syntype of Ph. turbinatus (NHMW 14002). Scale bars 5 mm
Fig. 12 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 12 Phorcus richardi (Payraudeau 1826). a PCA plot of PC1 vs. PC2 of genus Phorcus. Phorcus richardi (maroon) is the most abundant species in the current sample. It separates well from Ph. articulatus and Ph. turbinatus. One group of Ph. mutabilis is not distinguishable from Ph.
Fig. 11 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 11 Steromphala divaricata (Linnaeus, 1758). a PCA plot of PC1 vs. PC2 from genus Steromphala. Steromphala divaricata (pink) cannot be recovered as a completely separated group as it shows a small overlap with St. varia. Type material and material from this study do not overlap. Three individuals (Linné 41–43) of the type material (pink group on the
Fig. 10 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 10 Steromphala varia (Linnaeus, 1758). a PCA plot of PC1 vs. PC3 of genus Steromphala. Steromphala varia (blue) separates from all other species. Specimens from this study overlap with the type material. b
Fig. 4 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 4 Plot of first and third principal component of combined lateral and ventral landmark data from Phorcus and Steromphala individuals. A morphological separation of the two genera becomes apparent
Fig. 5 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 5 Lectotype of Steromphala cineraria (Linnaeus, 1758). Located at LSL (LSL.502). Scale bar 5 mm
Fig. 2 Landmark templates for representative a lateral and b in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 2 Landmark templates for representative a lateral and b ventral standardised views. Filled circles show fixed landmarks. Empty circles show semilandmarks, processed as sliding landmarks
Fig. 6 in Phortica eparmata species complex (Diptera, Drosophilidae) from the Oriental Region, with DNA barcoding information of Chinese species
Fig. 6. Phortica (Phortica) yena sp. nov., ♂. A. Epandrium and cercus; B. Surstylus; C. Hypandrium, paramere, aedeagus and aedeagal apodeme. Scale bars = 0.1 mm.
Fig. 5 in Phortica eparmata species complex (Diptera, Drosophilidae) from the Oriental Region, with DNA barcoding information of Chinese species
Fig. 5. Phortica (Phortica) wongding sp. nov., ♂. A. Epandrium and cercus; B. Surstylus; C. Hypandrium, paramere, aedeagus and aedeagal apodeme. Scale bars = 0.1 mm.
Fig. 1 in Phortica eparmata species complex (Diptera, Drosophilidae) from the Oriental Region, with DNA barcoding information of Chinese species
Fig. 1. Bayesian tree based on the combined data of COI gene. Numbers around the node indicate the Bayesian posterior probability; results lower than 0.5 are not shown.
Fig. 4 in Phortica eparmata species complex (Diptera, Drosophilidae) from the Oriental Region, with DNA barcoding information of Chinese species
Fig. 4. Phortica (Phortica) mengda sp. nov., ♂. A. Epandrium and cercus. B. Surstylus. C. Hypandrium, paramere, aedeagus and aedeagal apodeme. Scale bars = 0.1 mm.
Fig. 3 in Phortica eparmata species complex (Diptera, Drosophilidae) from the Oriental Region, with DNA barcoding information of Chinese species
Fig. 3. Phortica (Phortica) kava sp. nov., ♂. A. Arista. B. Epandrium and cercus. C. Surstylus. D. Hypandrium, paramere, aedeagus and aedeagal apodeme. Scale bars = 0.1 mm.
Fig. 2 in Phortica eparmata species complex (Diptera, Drosophilidae) from the Oriental Region, with DNA barcoding information of Chinese species
Fig. 2. Phortica (Phortica) jadete sp. nov., ♂. A. Arista. B. Epandrium and cercus (lateral view). C. Surstylus (frontal view). D. Hypandrium, paramere, aedeagus and aedeagal apodeme (lateral views). E. Paramere (frontal view). F. Tip of aedeagal median rod (ventral view). Scale bars = 0.1 mm.
Photos of the barcoded strains from the UK-Barcoding
<p>This project (Kelly et al., 2018), funded by the Environment Agency, England’s environmental regulator, aimed to develop a DNA metabarcoding approach to ecological assessment based on diatoms using HTS of a fragment of the <em>rbc</em>L gene. It aimed to ensure continuity with microscopical methods while, at the same time, complying with the EU Water Framework Directive, which refers to ‘taxonomic composition’. The twin foundations for this study were a calibration dataset of samples, analyzed by both microscopy and HTS approaches, along with a reference database of <em>rbc</em>L DNA barcodes which link to Linnaean taxonomy.</p> <p>You can find in this zip file a selection of photos of the diatom strains isolated in the framework of the project UK-barcoding. This project was funded by the UK Environment Agency</p> <p> </p> <p>Reference :</p> <p>Kelly, M. G., N. Boonham, S. Juggins, P. Kille, D. G. Mann, D. Pass, D. Sapp, S. Sato, & R. Glover, 2016. A DNA based diatom metabarcoding approach for Water Framework Directive classification of rivers. Bristol, UK: 1–94.</p> <p> </p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.