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800 results for “Issues”
Supplementary files and data Files for "Discordance between mitochondrial, nuclear, and symbiont genomes in aphid phylogenetics: who is telling the truth?" Zoological journal of the Linnean society, 2024, vol 1, issue 4. https://doi.org/10.1093/zoolinnean/zlae098
<p>This repository comprises</p> <ul> <li>a file with all supplementary Tables (<strong>Supplementary_Tables</strong>). Table S1: Collection details and voucher ID for aphid samples from the CBGP-Inrae collection, data origin is given for other specimens. Table S2: Amplification success of long range DNA fragments from mitochondrial genomes . Table S3: Primers used for fluidigm aplification of nuclear genes and sequencing success. Table S4. Genomic features of newly sequenced Buchnera aphidicola with aphid taxonomic affiliation. Table S5: Summary of models used for each ML analysis and corresponding log-likelihood score of the best tree.Table S6: Output of RERConverge analyses.</li> <li>two Supplementary figures: Figure S1: Workflow of phylogenetic analyses as implemented on each dataset. Figure S2: Plot depicting the genome-wide pattern of molecular evolution (dN/dS) between disymbiotic (n = 15) and monosymbiotic aphid (n = 45) branches across the ML phylogeny (horizontal bars indicate 95% CI of the means). <em>P</em> value was calculated by using Wilcoxon Rank test.</li> <li>a word file (Text S1) with : Details of protocol for obtaining mitochondrial genomes through long-range DNA amplifications and Illumina sequencing, and two-step PCR protocole.</li> <li>an archive (archive1) with the mitochondrial AA and DNA matrices and alternative phylogenetic trees under ML and Bayesian analyses ; </li> </ul> <ul> <li>an archive (archive2) with the nuclear AA and DNA matrices and alternative phylogenetic trees under ML and Bayesian analyses</li> <li>an archive (archive 3) with the twelve new <em>Buchnera</em> genome drafts.</li> <li> an archive (archive4) with the <em>Buchnera</em> AA matrices and alternative topologies </li> </ul> <p> </p>
Quantitative sodium MRI in foods: addressing sensitivity issues using single quantum Chemical Shift Imaging at high field
<p>Quantitative sodium MRI in foods: addressing sensitivity issues using single quantum Chemical Shift Imaging at high field</p>
Issues Concerning the Carcinogenesis Risk and Implementation of the System of RP
<p>The ICRP’s System of radiological protection has been changing over time, and while it is robust enough, there is a need to add new knowledge and further improvement. Radiological protection is based on a combination of scientific knowledge, experience, and values; however, experience and values would be flexible and change with time and region. Radiation biology strives for universality based on biological mechanisms. At low dose and low dose rate, which is the main area of radiation protection, carcinogenesis is regarded as the main risk and its knowledge need to be elucidated. The DDREF is considered separately as LDEF and DREF nowadays. The key question is how to apply them to radiation risk inference. In terms of risk estimation by epidemiology, the paper of an extended observation period for cancer incidence for high natural radiation areas in Kerala, India, is recently published. It shows that there is no increase in cancer risk with increasing cumulative dose with greater confidence. The involvement of stem cell competition, as proposed in ICRP Publ. 131, in the dose rate effect has also been clarified by recent biological studies. On the other hand, in the implementation of the system of radiological protection, it is necessary to clearly show how to deal with uncertainty when protection measures are taken for small doses. It would be a departure from the principle of optimisation to require additional conservatism based on the precautionary principle when radiation safety standards established with sufficiently conservative assumptions are complied with. Another important issue for the application of optimisation will be waste management, which requires different actions depending on the exposure situation; although there is very little on waste management in the ICRP papers, it is necessary to discuss whether the guidance in the existing publications should be basically effective or not. The concept of waste disposal in existing exposure situations could be a point of discussion. Although, it is understandable that simplification and clarification are useful for the application of protection, due consideration should be taken to avoid misunderstanding and confusion. It is hoped that the process of reaching a decision on the basic approach and arrangements for the System of RP will be carried out with open doors involving stakeholders.</p>
example Dataset for OMERO upload issue
<p>example Dataset for OMERO upload issue</p> <p> </p> <p>just a couple of images with one channel in the middle of the plate.</p>
The National Composite Index for Family Planning (NCIFP): results and methodological issues
<p>This dataset accompanies a paper under consideration for publication in Gates Open Research by Rebecca Rosenberg, John Ross, Karen Hardee and Imelda Zosa-Feranil. The file includes raw data, as well as a tab for each table and figure in the paper.</p>
bbbbq_article_issue_157
<p>Data for the article 'Transmembrane helices are an over-presented and evolutionarily conserved source of major histocompatibility complex class I and II epitopes' by Richèl J.C. Bilderbeek, Maksim V. Baranov, Geert van den Bogaart and Frans Bianchi.</p> <p>Link to article: [https://github.com/richelbilderbeek/bbbq_article](https://github.com/richelbilderbeek/bbbq_article)</p> <p> </p>
An evidence-based study on issue labeling in Github-based repositories (Supplementary material)
<p>The open-source software community has grown in size and importance over the years. As a consequence, the number of project contributors has increased considerably. The capability of open-source project repositories to accommodate issue reports is essential. An issue report encompasses a large set of data that describes the necessary changes a software should handle. As developers need detailed information to reproduce and find them, incomplete information is a severe problem that may influence triage and defect detection leading to delays in project maintenance. Issue trackers commonly use the labeling method to add extra details to issues. Knowing the importance of labels, this dissertation focus on investigating the usage, creation, and similarities in the context of the issue lifecycle in both maintenance and evolution in the repository issue trackers of the largest and most popular code hosting platform, Github. In addition, it analyzes the number of labeled and unlabeled issues in the repository and the connection between the issues' components, with an analysis focused on the lifecycle. The results indicate a significant correlation between repositories with many issues and the creation of labels, but not all repositories use them. 64.58% of the repositories insert new labels as the project evolves. 73.14% repositories applied on issues the Github standard labels. We also found an influence of primary issue fields such as title, description, and comments in most issue labels, impacting the creation and labeling issues. These numbers show that issue labeling is of prominent relevance for project maintenance and evolution. It provides developers with an easy and convenient way to inform about an incoming issue reported by systems users.</p>
Dataset of Issues
<p>This repository contains the datasets used in the study and the scripts used to collect them.</p> <p>dataset - </p>
Figure 2 from: Keller D., Radivojević N., Lazzarini V. (2022). Issues in ubimus archaeology: Beyond pure computing and precision during the analogue-digital transition
<p><strong>Figure2_W20_003_2_P92</strong></p> <p><strong>Fonds Jean-Claude Risset, Laboratoire PRISM (UMR 7061 – France). The copyright applies to documents digitized by the PRISM laboratory.</strong></p>
Figure 3 from: Keller D., Radivojević N., Lazzarini V. (2022). Issues in ubimus archaeology: Beyond pure computing and precision during the analogue-digital transition
<p><strong>Figure3. W20_003_3_P10</strong><br> <strong>Fonds Jean-Claude Risset, Laboratoire PRISM (UMR 7061 – France). The copyright applies to documents digitized by the PRISM laboratory</strong></p>
Figure 1 from: Keller D., Radivojević N., Lazzarini V. (2022). Issues in ubimus archaeology: Beyond pure computing and precision during the analogue-digital transition
<p><strong>Figure 1. W20_003_2_P20</strong><br> <strong>Fonds Jean-Claude Risset, Laboratoire PRISM (UMR 7061 – France). The copyright applies to documents digitized by the PRISM laboratory</strong></p>
eDoer - A Human-AI based Learning Environment - Ethics and Privacy related issues
<p>The eDoer platform was presented on the first Ethical, Legal, and Societal Aspects (ELSA) workshop of the German NFDI FAIR Data Spaces community. </p> <p>eDoer platform: <a href="http://edoer.eu/%C2%A0">http://edoer.eu/ </a></p>
The Good First Issue Recommendation Dataset from "GFI-Bot: Automated Good First Issue Recommendation on GitHub"
<p>This is a good first issue (GFI) recommendation dataset created from the GFI-Bot project (<a href="https://github.com/osslab-pku/gfi-bot">https://github.com/osslab-pku/gfi-bot</a>). For more information about the GFI recommendation problem and GFI-Bot, please check our publications:</p> <ul> <li>Wenxin Xiao, Hao He, Weiwei Xu, Xin Tan, Jinhao Dong, and Minghui Zhou. 2022. Recommending Good First Issues in GitHub OSS Projects. In Proceedings of the 44th International Conference on Software Engineering, ICSE 2022, Pittsburgh, PA, USA, May 21–29, 2022. ACM. <a href="https://hehao98.github.io/files/2022-recgfi.pdf">https://hehao98.github.io/files/2022-recgfi.pdf</a></li> <li>Hao He, Haonan Su, Wenxin Xiao, Runzhi He, and Minghui Zhou. 2022. GFI-Bot: Automated Good First Issue Recommendation on GitHub. In Proceedings of the 2022 ACM 30th Joint European Software Engineering Conference and Symposium on the Foundations of Software Engineering, ESEC/FSE 2022, Singapore, November 14-16, 2022. ACM. <a href="https://hehao98.github.io/files/2022-gfibot.pdf">https://hehao98.github.io/files/2022-gfibot.pdf</a></li> </ul> <p>The dataset is a MongoDB dump and needs to be restored to a MongoDB instance before use. This can be done via the official <a href="https://www.mongodb.com/docs/database-tools/mongorestore/"><code>mongorestore</code></a> tool by running a command like this in the <code>dataset/</code> folder:</p> <pre><code class="language-bash">mongorestore --uri={{ your mongodb url }} --gzip </code></pre> <p>In the <code>gfibot.dataset</code> collection, each document describes the state of an issue at a certain time (either at the time of issue creation or at the time of issue resolution). The <code>resolver_commit_num</code> is the ground truth label (i.e., # of commits the issue resolver has made in the repository before issue resolution, excluding commits for resolving the issue itself; <code>resolver_commit_num = 0</code> means the resolver is someone completely new to the repository). The remaining fields can be used as features or further analyzed to derive new features.</p> <p>The <code>gfibot.resolved_issue</code> collection additionally provides information about which GitHub user resolved this issue and in what commit or pull request. This information can be used to study problems like, e.g., personalized good first issue recommendation or newcomer retention mechanisms.</p> <p>This dataset can be used to evaluate new GFI recommendation approaches. We hope it will be helpful in advancing GFI recommendation research and other future studies on open-source software onboarding.</p>
Greek ostrakon – instructions to issue wine
Greek ostrakon – instructions to issue wine ID no.: MAK/AS/2782/72 Museum: Archaeological Museum in Kraków https://muzea.malopolska.pl/en/objects-list/1178 Digitalisation: RDW MIC, Małopolska's Virtual Museums Plus project Source: Objaverse 1.0 / Sketchfab
Dataset for "Study of reionization issues in the diagnostic neutral beam for the RFX-mod2 experiment"
<p>Dataset for the presentation <a href="../records/11368194">Study of reionization issues in the diagnostic neutral beam for the RFX-mod2 experiment</a></p>
Map 1 in Fisheries at the heart of a development issue in Mauritania: Small coastal pelagics between market logic and nutritional rationality
Map 1: Geographical areas of small pelagics fishing and landings
Fig 3 in Fisheries at the heart of a development issue in Mauritania: Small coastal pelagics between market logic and nutritional rationality
Fig 3: Contribution of small coastal pelagics to public finances
Fig 2 in Fisheries at the heart of a development issue in Mauritania: Small coastal pelagics between market logic and nutritional rationality
Fig 2: Evolution of the quantities of fish distributed by the SNDP
Fig 1 in Fisheries at the heart of a development issue in Mauritania: Small coastal pelagics between market logic and nutritional rationality
Fig 1: Evolution of fishmeal and fish oil production in Mauritania
Issues of the Eclipse Platform Repository with Resolution set to FIXED
<p>In this dataset we can find all the issues of the Eclipse Platform repository where the Resolution attribute is set to FIXED. <br>The dataset contains information about the ID, Title, Description, StartDate( Date when the issue was asigned to its resolutor) and EndDate (Date when the issue was set to FIXED) of the issues in this repository.<br><br>This file does not include issues with a Duration ( EndDate-StartDate) is less than 5 minutes or issues that do not have its title or description set.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.