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309
datasets available to search
ShareScore release 0.9.0
Dataset results
309 results for “Plant roots”
Plant root transcriptome profiling of Azospirillum-rice cooperation
GEO Series GSE59137. Oryza sativa Japonica Group; Oryza sativa. 18 samples. Type: Expression profiling by array.
Expression data from tomato root tissue inoculated or not with a plant growth promoting bacteria (PGPB) strain
GEO Series GSE106317. Solanum lycopersicum. 36 samples. Type: Expression profiling by array.
affy_med_2011_14-Transcriptomic analysis of roots of WT (A17) Medicago truncatula plants and of a hypermycorrhizal mutant (B9) grown on limiting (P/10) or non-limiting phosphate (P2).
GEO Series GSE44102. Medicago sativa; Medicago truncatula; Sinorhizobium meliloti. 12 samples. Type: Expression profiling by array.
DATA, CODE: Theory and simulation for low frequency interfacial polarization of plant root cell
<p>The data and simulation codes used in the study.</p>
Fig. 3 in Metabolite pattern in root nodules of the actinorhizal plant Casuarina equisetifolia
Fig. 3. The contents of tyramine in various organs of C. equisetifolia. Values are in mean ± SD, where n = 3.
Fig. 4. A in 3-Pentanol glycosides from root nodules of the actinorhizal plant Alnus cremastogyne
Fig. 4. A. cremastogyne plants treated with root nodule suspension (RNS) emit 3-pentanol. (A) 3-Pentanol was detected in the VOCs of A. cremastogyne treated with RNS. The unity of Y-axis would be nmol per plant per h, and nmol per g nodules per h for groups of control A. cremastogyne and control RNS, respectively. n =5 (A. cremastogyne treated with RNS), 4 (control RNS), and 3 (control A. cremastogyne) biological replicates. The data shown are mean ± SD. Significant differences of A. cremastogyne treated with RNS from control RNS and from control A. cremastogyne are shown in * and #, respectively (Student's t-test: * and # indicate P <0.05, while *** and ### indicate P <0.001). (B) 3-Pentanol was detected in the body of A. cremastogyne treated with RNS (n = 5 biological replicates). (C) The accumulated amounts of 3-pentanol in the leaves and roots of A. cremastogyne treated with RNS. The data shown are mean ± SD from three biological replicates.
Expression data of young Arabidopsis root plants experiencing either phosphate deficiency, iron deficiency or both, for 3hours, 6 hours and 9 hours in comparison to plants fully supply with nutrients
GEO Series GSE171449. Arabidopsis thaliana. 39 samples. Type: Expression profiling by array.
Expression data from roots of WT and uri plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours
GEO Series GSE137201. Arabidopsis thaliana. 8 samples. Type: Expression profiling by array.
Expression data from root tissues of 35S:AtHMA4 and wild-type tomato plants grown in the presence of Zn
GEO Series GSE68639. Solanum lycopersicum. 12 samples. Type: Expression profiling by array.
Novosphingobium sp. HR1a modifies the clover-root architecture through the alteration of the jasmonic acid levels in clover plants
GEO Series GSE218104. Novosphingobium sp. HR1a. 2 samples. Type: Expression profiling by high throughput sequencing.
Gene expression in roots and shoots of plants grown on selenate
GEO Series GSE9311. Arabidopsis thaliana. 8 samples. Type: Expression profiling by array.
The Arabidopsis spaceflight transcriptome: a comparison of whole plants to discrete root hypocotyl and shoot responses to the orbital environment
Arabidopsis thaliana was evaluated for its response to the spaceflight environment in three replicated experiments on the International Space Station. Two approaches were used; GFP reporter genes were used to collect gene expression data in real time within unique GFP imaging hardware and plants were harvested on orbit to RNAlater for subsequent analyses of gene expression with using Affymetrix and SAGE transcriptome analyses. Three tissue types were examined (leaves hypocotyls and roots) and compared to analyses conducted with whole plants. Transcriptome analyses with whole plants suggested that the spaceflight environment had little impact on the transcriptome of arabidopsis however closer examination of selected tissues revealed that there are a number of tissue-specific responses that arabidopsis employs to respond to this novel environment
The Arabidopsis spaceflight transcriptome: a comparison of whole plants to discrete root, hypocotyl and shoot responses to the orbital environment
Arabidopsis thaliana was evaluated for its response to the spaceflight environment in three replicated experiments on the International Space Station. Two approaches were used; GFP reporter genes were used to collect gene expression data in real time within unique GFP imaging hardware, and plants were harvested on orbit to RNAlater for subsequent analyses of gene expression with using Affymetrix and SAGE transcriptome analyses. Three tissue types were examined (leaves, hypocotyls and roots) and compared to analyses conducted with whole plants. Transcriptome analyses with whole plants suggested that the spaceflight environment had little impact on the transcriptome of Arabidopsis, however, closer examination of selected tissues revealed that there are a number of tissue-specific responses that Arabidopsis employs to respond to this novel environment.
Glycome profiling and immunohistochemistry uncover changes in cell walls of Arabidopsis thaliana roots during spaceflight: Advanced Plant EXperiment (APEX) 03-1 Raw Dataset
This study was conducted to uncover the underlying molecular mechanisms by which microgravity impacts cell wall architecture in the model plant Arabidopsis thaliana using the Vegetable Production System (Veggie) housed on the International Space Station (ISS). Based on our previous space flight studies using the Biological Research in Canisters (BRIC) hardware on the STS-131 Space Shuttle mission, we found that plants respond to microgravity in large part through the transcriptional reprogramming of genes that control cell wall remodeling. This follow-up spaceflight experiment called the Advanced Plant EXperiments (APEX 03-1) in Space was designed to use Veggie unit on the ISS and on the ground unit on the Space Station Processing Facility (SSPF) to probe deeper into spaceflight-induced cell wall associated transcript expression changes. In this study we used RNA-Seq in combination with glycome profiling (glycomics) to correlate spaceflight-induced gene expression changes with actual cell wall modifications within seedlings.
Expression data of Frankia CcI3 in plant root nodules under salt stress
GEO Series GSE60938. Frankia casuarinae. 6 samples. Type: Expression profiling by high throughput sequencing.
NGS analysis of small RNAs under nitrogen excess stress in shoot and root of 2 week old barley plants
GEO Series GSE145799. Hordeum vulgare. 12 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Transcriptome analysis of rice roots in response to plant growth promoting rhizobacterium Pseudomonas putida RF3
GEO Series GSE99881. Oryza sativa. 6 samples. Type: Expression profiling by array.
Cold tolerance in rice plants is partially controlled by root responses
GEO Series GSE145582. Oryza sativa. 8 samples. Type: Expression profiling by high throughput sequencing.
Assessing the role of the heterologous expression of the bacterial arsenic efflux pump ACR3 in plant roots: implications for transcriptomics and As accumulation
GEO Series GSE126193. Nicotiana tabacum. 18 samples. Type: Expression profiling by array.
Transcriptome analysis of rice roots in response to plant growth promoting bacterium Bacillus subtilis RR4
GEO Series GSE80800. Oryza sativa. 6 samples. Type: Expression profiling by array.
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.