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FIGURE 2 in Under the surface: what we know about the threats to subterranean fishes in Brazil
FIGURE 2 | Distribution of Brazilian subterranean fish species according to basin.
FIGURE 4 in Under the surface: what we know about the threats to subterranean fishes in Brazil
FIGURE 4 | Distribution of Brazilian subterranean fish species according to the type of habitat.
Cryptic diversity patterns of subterranean estuaries
<p>Data and results used in the analyses for the article:</p> <p>Calderón-Gutiérrez F, Labonté JM, Gonzalez B, Iliffe TM, Mejía‐Ortíz LM, Borda E. 2024. Cryptic diversity patterns of subterranean estuaries. Proceedings of the Royal Society B: Biological Sciences. (doi: 10.1098/rspb.2024.1483)</p>
Map 2 in On Quedius coloratus FAUVEL, 1875 and allied species, with an appendix on Quedius species collected in Greece with subterranean pitfall traps, and a new synonymy (Coleoptera: Staphylinidae: Staphylininae)
Map 2: Distributions of Quedius endogeus (black circles) and Q. bernhaueri (white triangles).
Fig. 4 in Morphology and distribution of the cave knifefish Eigenmannia vicentespelaea Triques, 1996 (Gymnotiformes: Sternopygidae) from Central Brazil, with an expanded diagnosis and comments on subterranean evolution
Fig. 4. Regression between OD and LEA in Eigenmannia vicentespelaea (n = 25).
Fig. 1 in Three new species of the subterranean genus Guiodytes from Guangxi, China (Coleoptera: Carabidae: Clivinini)
Fig. 1. Map of Guangxi (China) with the occurrences of Guiodytes Tian, 2013.
Fig. 9 in Three new species of the subterranean genus Guiodytes from Guangxi, China (Coleoptera: Carabidae: Clivinini)
Fig. 9. Habitus of Guiodytes inexpectatus Tian & Zhou sp. nov., holotype, ♀ (SCAU).
Fig. 7 in Three new species of the subterranean genus Guiodytes from Guangxi, China (Coleoptera: Carabidae: Clivinini)
Fig. 7. Habitus of Guiodytes yueliangensis Huang & Tian sp. nov., holotype, ♂ (SCAU).
Data from: Taking eDNA underground: factors affecting eDNA detection of subterranean fauna in groundwater
<p class="BodyText1"><span>Stygofauna are ancient aquatic fauna that have evolved to live underground. The impacts of anthropogenic climate change, extraction and pollution on groundwater pose major threats to groundwater health, prompting the need for efficient and reliable means to detect and monitor stygofaunal communities. Traditional survey techniques for these species rely on morphological identification and can be biased, labour intensive, and often indeterminate to lower taxonomic levels. By contrast, environmental DNA (eDNA)-based methods have the potential to dramatically improve on existing stygofaunal survey methods in a large range of habitats and for all life stages, reducing the need for the destructive manual collection of often critically endangered species or specialized taxonomic expertise. We compared eDNA and haul-net samples collected in 2020 and 2021 from 19 groundwater bores and a cave on Barrow Island, located northwest of Western Australia, and assessed how sampling factors influenced the quality of eDNA detection of stygofauna. The two detection methods were complementary, eDNA metabarcoding was able to detect soft-bodied taxa and fish often missed by nets, but only detected seven of the nine stygofaunal crustacean orders identified from haul-net specimens. Our results also indicated that eDNA metabarcoding could detect 54-100% of stygofauna from shallow water samples and 82-90% from sediment samples. However, there was significant variation in stygofauna diversity between sample years and sampling types. The findings of this study demonstrate that haul net sampling has a tendency to underestimate stygofaunal diversity and that eDNA metabarcoding of groundwater can substantially improve efficiency of stygofaunal surveys.</span></p>
A dark side of conservation biology: protected areas fail in representing subterranean biodiversity. Databases.
<p>We obtained distribution data for leiodids by digitizing the information provided by Fresneda and Salgado (2017). This information was updated and expanded with additional data from several sampling campaigns (unpublished data). For subterranean spiders, we included the entirety of the Alps range extending from France in the east westward through Switzerland, Italy, Liechtenstein, Austria, Germany, and Slovenia, by integrating available data in Global Biodiversity Information Facility (GBIF), Spider of Europe), Araneae.it and other literature sources.</p>
[DATA LINK] Clearing the way to the external world: do ants make optimal decisions when removing obstacles from their subterranean galleries?
<p>Data repository of the submitted paper:</p> <p>“Clearing the way to the external world: do ants make optimal decisions when removing obstacles from their subterranean galleries?”</p> <p>Authors : Louis Devers (0009-0001-3726-1891), Clémentine Cléradin, Zoé Bescond-Michel, Gérard Latil and Vincent Fourcassié (0000-0002-3605-6351).</p> <p>Contains :</p> <ul> <li>Extraction.csv [database] : the observed orientations of the obstacle extraction</li> <li>Traction.csv [database] : censing the orientation of mandibular grasps and effective pulls observed</li> <li>Model_traction.csv [database] : censing the orientation of virtual pulls</li> <li>Model_extraction.csv [database] : censing the orientation of virtual extraction, resulting from sequential tractions presented in model_traction.csv</li> <li>TreatmentAndGraphs [R script] : script including statistical analysis, and survival analysis graphs</li> </ul>
Figures 23 in New subterranean freshwater gastropods of Montenegro (Mollusca: Gastropoda: Hydrobiidae), with description of one new genus and two new species
Figures 23.Iverakia hausdorfin. sp. (holotype). 2 = shell, 3 = aperture from the lateral view.
Fig. 1 in Two new species of the genus Deuteraphorura Absolon, 1901 (Hexapoda, Collembola, Onychiuridae) from Georgian caves with remarks on the subterranean biodiversity of the Caucasus Mountains
Fig. 1. Locations of studied caves in Georgia. For cave abbreviations see Table 1.
Data from: Human activities modulate reciprocal effects of a subterranean ecological engineer rodent, Tachyoryctes macrocephalus, on Afroalpine vegetation cover
<p class="MsoNormalCxSpFirst"><span>Human activities, directly and indirectly, impact ecological engineering activities of subterranean rodents. As engineering activities of burrowing rodents are affected by, and reciprocally affect vegetation cover via feeding, burrowing and mound building, human influence such as settlements and livestock grazing, could have cascading effects on biodiversity and ecosystem processes such as bioturbation. However, there is limited understanding of the relationship between human activities and burrowing rodents. The aim of this study was therefore to understand how human activities influence the ecological engineering activity of the giant root-rat (<em>Tachyoryctes macrocephalus</em>), a subterranean rodent species endemic to the Afroalpine ecosystem of the Bale Mountains of Ethiopia. We collected data on human impact, burrowing activity and vegetation during February and March of 2021. Using path analysis, we tested (1) direct effects of human settlement on the patterns of livestock grazing intensity, (2) direct and indirect impacts of humans and livestock grazing intensity on the root-rat burrow density, and (3) whether human settlement and livestock grazing influence the effects of giant root-rat burrow density on vegetation and <em>vice versa</em>. We found lower levels of livestock grazing intensity further from human settlement than in its proximity. We also found a significantly increased giant root-rat burrow density with increasing livestock grazing intensity. Seasonal settlement and livestock grazing intensity had an indirect negative and positive effect on giant root-rat burrow density, respectively, both via vegetation cover. Analysing the reciprocal effects of giant root-rat on vegetation, we found a significantly decreased vegetation cover with increasing density of giant root-rat burrows, and indirectly with increasing livestock grazing intensity via giant root-rat burrow density. Our results demonstrate that giant root-rats play a synanthropic engineering role that affects vegetation structure and ecosystem processes. </span></p>
Response and resilience of karst subterranean estuary communities to precipitation impacts
<p>Data and code used in the analyses for the article "Response and resilience of karst subterranean estuary communities to precipitation impacts" published in the journal "Ecology and Evolution" in 2023. See Metadata file for the description on each file.</p>
How did subterranean amphipods cross the Adriatic Sea? Phylogenetic evidence for the dispersal-vicariance interplay mediated by marine regression-transgression cycles
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Data from: Refining trophic dynamics through multi-factor Bayesian mixing models: A case study of subterranean beetles
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Data from: The role of glacial‐interglacial climate change in shaping the genetic structure of eastern subterranean termites in the southern Appalachian Mountains, USA
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Data from: Ultradian rhythms of activity in a wild subterranean rodent
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Data from: Reproductives and eggs trigger worker vibration in a subterranean termite
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.