Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
15,733
datasets available to search
ShareScore release 0.9.0
Dataset results
15,733 results for “article”
Data Set for the Journal Article "Automated Preparation of Nanoscopic Structures: Graph-Based Sequence Analysis, Mismatch Detection, and pH-Consistent Protonation with Uncertainty Estimates"
<p>This repository containes the data generated by ASAP and discussed in the journal article [Csizi, K.-S. and Reiher, M., 2023, arXiv:2307.16344], including Cartesian coordinates of training and test set molecules, and MD trajectories. </p>
Raw dataset and additional data for article "Nonmotor symptoms associated with progressive loss of dopaminergic neurons in a mouse model of Parkinson's disease"
<p>Dataset from the project investigating the presence of nonmotor symptoms of Parkinson's disease in a mouse model of progressive loss of dopaminergic neurons (namely,TIF-IADATCreERT2 strain). Mice were tested for executive and cognitive functions (males: Operant Sensation Seeking test, OSS; females: Probabilistic Reversal Learning Task in Intellicages), olfactory acuity (males: buried food test), saccharin preference (males and females), and motor performance (males and females: test using CatWalk apparatus).</p><p>The dataset includes files used to perform statistical analyses but their names may vary from the ones used in the scripts. For the purpose of recreating our analyses, please refer to the GitHub page, where both scripts and input data file names (in 'Raw data files' section) are compliant: https://github.com/annaradli/tif-pd-behavior.</p><p><strong>Description of files:</strong></p><p><i>Raw data files:</i></p><ul><li>animals_info.csv - animals data: genotype, sex, age, Intellicage tag identifier</li><li>catwalk_run_statistics_all_females.csv - data recorded in CatWalk apparatus for females</li><li>catwalk_run_statistics_all_males.csv - data recorded in CatWalk apparatus for males</li><li>females_weight_raw_data_revised.csv - females' body weight (revised for containing Polish words)</li><li>intellicage_raw_data.csv - data recorded in IntelliCage exported to .csv format</li><li>intellicage_raw_data_R.RData - data recorded in IntelliCage in .RData format</li><li>males_weight_raw_data.csv - males' body weight</li><li>olfactory_time_digging_raw_data.csv - time to start digging at the right place in the buried food test</li><li>olfactory_time_retrieve_raw_data.csv- time to retrieve cracker in the buried food test</li><li>oss_raw_data.csv - data recorded in the OSS test</li><li>saccharin_preference_males_raw_data.csv - saccharin preference test results for males</li><li>snvta_cells_count.csv - number of TH+ cells in SN and VTA in male mice (3+3) 14 weeks after tamoxifen treatment</li></ul><p><i>Additional data files:</i></p><ul><li>all_anova.xlsx - summary of two-way ANOVAs of all behavioral tests and weight measurements for males and females</li><li>catwalk_complete.xlsx - CatWalk complete dataset with datapoints</li><li>catwalk_correlation_between_paws.xlsx - correlation coefficients of CatWalk parameters between the left and right paws</li><li>catwalk_reduced.xlsx - CatWalk parameters used in linear regression model reduction of data</li><li>intelli.xlsx - IntelliCage data summarized in bins</li><li>oss.xlsx - operant sensation-seeking data</li></ul><p>v2 contains the corrected 'animals_info.csv' file without an unnecessary column.</p><p>v3 has a revised version of file containing females' weight measurements and also added a file with midbrain cell counts</p><p>v4 has a whole section of 'Additional data files' added</p>
Reproduction Package (VirtualBox Image) for the POPL 2024 Article `Enhanced Enumeration Techniques for Syntax-Guided Synthesis of Bit-Vector Manipulations`
<p>This is the artifact for the ACM PACMPL article <i>Enhanced Enumeration Techniques for Syntax-Guided Synthesis of Bit-Vector Manipulations</i>. We provide our artifact as an easy-to-use VirtualBox image, which contains the benchmarks, our tools for bit-vector synthesis, and the scripts for generating the results showcased in the paper.</p>
Data and code corresponding to the article "Interaction network structure explains species temporal persistence in empirical plant-pollinator communities"
<p>This upload contains the Datasets and code to generate the results of the article "Interaction network structure explains species temporal persistence in empirical plant-pollinator communities".</p><p>The database comprises two files containing the abundances of plants and pollinators, and one containing the interaction networks among plants and pollinators. </p><p>The code folder contains the code to generate the results, and to generate the figures of the manuscript. </p>
Dataset related to article "Phantom‑based analysis of variations in automatic exposure control across three mammography systems: implications for radiation dose and image quality in mammography, DBT, and CEM"
<p>The dataset comprises information from several DICOM tags extracted from digital mammography (DM), digital breast tomosynthesis (DBT), and contrast-enhanced mammography (CEM) images acquired in a phantom study aimed at characterizing the automatic exposure control (AEC) behavior of diverse mammography equipment. The final ten columns of the datasets encompass signal (mena pixel values, MPV) and noise (standard deviation, SD) measurements derived from phantom images. These measurements are used to compute several image quality metrics, including contrast, signal-to-noise ratio (SNR), contrast-to-noise ratio (CNR), CNR relative difference in comparison to the 45 mm reference thickness, and a figure of merit (FOM) obtained by diving the squared CNR by the mean glandular dose (MGD).</p>
Dataset used in article "A 2-dimensional guillotine cutting stock problem with variable-sized stock for the honeycomb cardboard industry"
<p>The dataset presented is part of the one used in the article "A 2-dimensional guillotine cutting stock problem with variable-sized stock for the honeycomb cardboard industry" by P. Terán-Viadero, A. Alonso-Ayuso and F. Javier Martín-Campo, published in International Journal of Production Research (2023), doi: <a href="https://doi.org/10.1080/00207543.2023.2279129">10.1080/00207543.2023.2279129</a>. </p><p>In the paper mentioned above, two mathematical optimisation models are proposed for the Cutting Stock Problem in the honeycomb cardboard sector. This problem appears in a Spanish company and the models proposed have been tested with real orders received by the company, achieving a reduction of up to 50% in the leftover generated. </p><p>The dataset presented here includes six of the twenty cases used in the paper (the rest cannot be presented for confidentiality reasons). For each case, the characteristics of the order and the solution obtained by the two models are provided for the different scenarios analysed in the paper.</p><p> </p><p>*Version 1.1 contains the same data but renamed according to the instances name in the final version of the article.<br>*Version 1.2 adds the PDF with the accepted version of the article publised in International Journal of Production Research (2023), doi: <a href="https://doi.org/10.1080/00207543.2023.2279129">10.1080/00207543.2023.2279129</a>. </p>
Primary NMR Data Supporting the Article "Synthetic approach to 2-alkyl-4-quinolones and 2-alkyl-4-quinolone-3-carboxamides based on common β-keto amide precursors"
<p>This archive contains raw 1H/13C FIDs and associated data in Bruker-specific format that can be viewed with Bruker’s TopSpin or other appropriate NMR processing software. The subfolders are named in accordance with the compound numbering in the associated research paper (Synthetic Approach to 2-Alkyl-4-quinolones and 2-Alkyl-4-quinolone-3-carboxamides Based on Common β-Keto Amide Precursors).</p> <p>Correspondence: angelov@uni-plovdiv.bg</p> <p> </p>
Plaque assay images from the article "Predicting phage-bacteria interactions at the strain level from genomes"
<p>This dataset contains the plaque assay images for (i) the construction of the 403 bacteria * 96 phages interaction matrix and (ii) the "cocktails" experiment (100 E. coli strains challenged with recommended cocktails vs. a baseline). </p>
Dataset for article "Performance and Efficiency Evaluation of Technology-Based Business Incubators: A Systematic Literature Review"
<p>Dataset for article entitled "<strong>Performance and Efficiency Evaluation of Technology-Based Business Incubators: A Systematic Literature Review"</strong></p>
Rare Diseases hand-annotated news articles and research articles
<p>This dataset was produced in 2023 from the data collected throughout 2022 from MEDLINE (scientific articles) and from Event Registry (news) for the development of the Rare Diseases Mining project (https://idefine-europe.org/medline)</p><p>The data is distributed across 16 diseases supporting the research paper "Automatic text classification and interactive data visualization of published scientific and news articles on Rare Diseases"</p><p>The available data comes in 2 kinds and file formats:<br>CSV - the hand annotation of the news articles in TXT with 5 to 10 MeSH headings<br>JSON - the input file for the evaluation of the classifier, including the title, news article body and MeSH heading IDs (available from https://www.ncbi.nlm.nih.gov/mesh/)</p><p>The CSV files with name starting in "f1_", "pr_", "re_" are the results of the F1/Precision/Recall evaluation for each of the cases.</p><p>This work was prepared by Joao Pita Costa (researcher) and curated by Tanja Zdolšek Draksler (domain expert) </p>
Supplementary data and code to article "Single-Well Microseismic Focal Mechanism Inversions Using Different Source Models: A Case Study in the Ordos Basin, China"
<p>Supplementary data and code to article "Single-Well Microseismic Focal Mechanism Inversions Using Different Source Models: A Case Study in the Ordos Basin, China".</p><p>Transformations among the parameters of the moment tensor model refer to the code package from Tape and Tape (https://github.com/carltape/mtbeach/; https://github.com/carltape/surfacevel2strain; Tape and Tape, 2009, 2012, 2013, 2015).</p><p>Tape, C., P. Muse, M. Simons, D. Dong, and F. Webb (2009). Multiscale estimation of GPS velocity fields, Geophys. J. Int. 179, no.2, 945-971, doi: 10.1111/j.1365-246X.2009.04337.x.</p><p>Tape, W., and C. Tape (2012). A geometric setting for moment tensors, Geophys. J. Int. 190, no. 1, 476–498, doi: 10.1111/j.1365-246X.2012.05491.x.</p><p>Tape, W., and C. Tape (2013). The classical model for moment tensors, Geophys. J. Int. 195, no. 3, 1701–1720, doi: 10.1093/gji/ggt302.</p><p>Tape, W., and C. Tape (2015). A uniform parametrization of moment tensors, Geophys. J. Int. 202, no. 3, 2074–2081, doi: 10.1093/gji/ggv262.</p>
Dataset for article: Antimicrobial peptide induced colloidal transformations in bacteria-mimetic vesicles: Combining in silico tools and experimental methods
<p><strong>Dataset for publication:</strong></p><p>Antimicrobial peptide induced colloidal transformations in bacteria-mimetic vesicles: Combining in silico tools and experimental methods<br><i>Rafael V.M. Freire, Yeny Pillco-Valencia, Gabriel C.A. da Hora, Madeleine Ramstedt, Linda Sandblad, Thereza A. Soares, Stefan Salentinig</i><br>Journal of Colloid and Interface Science Volume 596, 15 August 2021, Pages 352-363 https://doi.org/10.1016/j.jcis.2021.03.060</p><p>Setup and conditions for the experiments are described in the experimental section of the published (open access) manuscript.</p><p>Data description in README.txt file.</p>
Simulation dataset and plotting scripts used for journal article "Impact of acidity and surface modulated acid dissociation on cloud response to organic aerosol" by Sengupta et al. (2024)
<p>Simulation data underlying all figures presented in "Impact of acidity and surface modulated acid dissociation on cloud response to organic aerosol" by Sengupta et al. (2024). DOI: 10.5194/acp-24-1467-2024</p> <p>The data for each figure and the plotting scripts are included in a zip file labelled by the figure number as presented in the paper and accompanying supplement.</p>
Datasets for the article "The temperature and density of a solar flare kernel measured from extreme ultraviolet lines of O IV"
<p>This entry contains the following files:</p><p>20120309_030933_kernel_fe8_shift.save<br>20120309_030933_kernel_fe8_shift_fits.txt<br>20110814_055342_qs_offlimb_si10.save<br>20110814_055342_qs_offlimb_si10_fits.txt</p><p>The .save files are IDL save files that can be restored into IDL using the restore command.</p><p>The 20120309 save file contains:</p><p>swspec - An IDL structure containing a 1D spectrum of the flare kernel for the EIS short wavelength (SW) channel. The format is that returned by eis-mask-spectrum.pro.<br>lwspec - As above, but for the long-wavelength (LW) channel.<br>map185 - An IDL map structure containing the Fe VIII 185.21 image that was used to select the flare kernel.<br>mask185 - An IDL structure containing the pixel mask that is used as input to eis-mask-spectrum.pro.</p><p>The Gaussian fits to the spectra (as performed with the routine spec-gauss-eis.pro) are stored in 20120309_030933_kernel_fe8<i>s</i>hift_fits.txt. This file can be read with read_line_fits.pro in Solarsoft.</p><p>The 20110814 dataset is used to obtain an off-limb coronal spectrum for calibration purposes. The save file contains:</p><p>swspec - An IDL structure containing a 1D spectrum of the off-limb region for the EIS SW channel. The format is that returned by eis-mask-spectrum.pro.<br>lwspec - As above, but for the LW channel.<br>map - An IDL map structure containing the Si X 272 image that was used to select off-limb region.<br>mask - An IDL structure containing the pixel mask that is used as input to eis-mask-spectrum.pro.</p><p>The Gaussian fits to the spectra (as performed with the routine spec-gauss-eis.pro) are stored in 20110814_055342_qs_offlimb_si10_fits.txt. This file can be read with read_line_fits.pro in Solarsoft. </p><p> </p><p> </p><p> </p><p> </p><p> </p><p> </p><p> </p>
Measured data of article "Superconducting NbN–Al hybrid technology for quantum devices"
<p>The folder contains raw data of figure 3 & 4 as well as a preprint of the article:</p> <p><em>Superconducting NbN–Al hybrid technology for quantum devices</em></p> <p>Authors: E. Mutsenik, S. Linzen, E. Il’ichev, M. Schmelz, M. Ziegler, V. Ripka, B. Steinbach, G. Oelsner, U. Hübner, and R. Stolz</p> <p>Journal: Low Temperature Physics/Fizyka Nyzkykh Temperatur, 2023, Vol. 49, No. 1, pp. 98–101</p>
Dataset of article: Synthesis of Dendritic ZSM‑5 Zeolite through Micellar Templating Controlled by the Amphiphilic Organosilane Chain Length
<p>Data used for preparation of the article : Synthesis of Dendritic ZSM‑5 Zeolite through Micellar Templating Controlled by the Amphiphilic Organosilane Chain Length</p> <p> Abstract of article: </p> <p>The synthesis of ZSM-5 zeolites by hydrothermal crystallization of protozeolitic nanounits functionalized with amphiphilic organosilanes of different chain length (Cn-N(CH3)2-(CH2)3-Si- (OCH3)3, n = 10, 14, 18 and 22) has been investigated. Well developed dendritic nanoarchitectures were achieved when using C14 and C18 organosilanes, exhibiting a radial and branched pattern of zeolitic nanounits aggregates. In contrast, although C10 and C22 organosilanes led to materials with hierarchical porosity, they lack of dendritic features. These differences have been linked to the formation of an amorphous mesophase at the gel preparation stage for the C14 and C18 samples, in which the surfactant micelles are covalently connected with the protozeolitic nanounits through siloxane bonds. The presence of the dendritic nanostructure positively impacts both the textural and catalytic properties of ZSM-5 zeolite. Thus, ZSM-5 (C14) and ZSM-5 (C18) samples exhibit the largest contribution of mesoporosity in terms of both surface area and pore volume. On the other hand, when tested as catalysts in the aldol condensation of furfural with cyclopentanone, which is an interesting reaction for the production of sustainable jet fuels, the highest catalytic activity is attained over the dendritic ZSM-5 materials due to their remarkable accessibility and balanced Brønsted/Lewis acidity.</p>
Research data for Taltal segment tomography article
<p><strong>Initial and final data for the local earthquake tomography experiment performed in the Taltal segment, northern Chile.</strong></p> <p>Article is submitted to G-cubed in August 2023.</p> <p>Content:</p> <p>- Initial earthquake catalog (*eqks)</p> <p>- Initial P- and S-wave arrival times (*data)</p> <p>- Initial 1D seismic velocity model (mod.1d)</p> <p>- Final earthquake catalog (*eqks)</p> <p>- Final P- and S-wave arrival times (*data)</p> <p>- Final seismic velocity models (Vp, Vs, Vp/Vs) in xyzv format</p> <p>- Station list</p> <p> - REST user guide</p> <p>- Tomography notes</p>
Original data for article "Is Unsupervised Dimensionality Reduction Sufficient to Decode the Complexities of Electrochemical Impedance Spectra?"
<p>The uploaded Jupyter notebooks contain original data generation and processing methods used in the article "Is Unsupervised Dimensionality Reduction Sufficient to Decode the Complexities of Electrochemical Impedance Spectra?" by A. Makogon, F. Kanoufi, and V. Shkirskiy</p>
Software and data underlying the article 'A serious game approach for lake modeling and management: the EscapeBLOOM'
<p>Here we share the player version of the EscapeBLOOM, a dummy version showcasing the techniques to create a similar digital escape room, and the anonymized data of the quantitative survey as presented in the publication 'A serious game approach for lake modeling and management: the EscapeBLOOM'.</p> <p>Anyone is free to play or adjust the game for their own educational purposes. The dummy and supplementary material of the publication 'A serious game approach for lake modeling and management: The EscapeBLOOM' <a title="Persistent link using digital object identifier" href="https://doi.org/10.1016/j.envsoft.2024.105941" target="_blank" rel="noreferrer noopener">https://doi.org/10.1016/j.envsoft.2024.105941</a> together provide guides on how to create a new game from the start and may help to adjust the existing game.</p> <p>The data of the survey was used for the analysis of perceived learning in the publication 'A serious game approach for lake modeling and management: the EscapeBLOOM'.</p>
Mining the health disparities and minority health bibliome: A computational scoping review and gap analysis of 200,000+ articles
<p>Without comprehensive examination of available literature on health disparities and minority health (HDMH), the field is left vulnerable to disproportionately focus on specific populations or conditions, curtailing our ability to fully advance health equity. Using scalable open-source methods, we conducted a computational scoping review of more than 200,000 articles to investigate major populations, conditions, and themes in the literature as well as notable gaps. We also compared trends in studied conditions to their relative prevalence in the general population using insurance claims (42 million Americans). HDMH publications represent 1% of articles in MEDLINE. Most studies are observational in nature, though randomized trial reporting has increased five-fold in the last twenty years. Half of all HDMH articles concentrate on only three disease groups (cancer, mental health, endocrine/metabolic disorders), while hearing, vision, and skin-related conditions are among the least well-represented despite substantial prevalence. To support further investigation, we also present HDMH Monitor, an interactive dashboard and repository generated from the HDMH bibliome.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.