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1,896 results for “call”
Bodhgayā, Bihar. Monk paying homage to the so-called vajrāsana
<p>Bodhgayā, Bihar. Monk paying homage to the so-called vajrāsana. As documented in 2006.</p>
Aligned DNA sequence matrix for phylogenetic analyses of Scinax in the article "Advertisement calls and DNA sequences reveal a new species of Scinax (Anura: Hylidae) on the Pacific Lowlands of Ecuador"
<p>Aligned DNA sequence matrix for phylogenetic analyses of Scinax in the article "Advertisement calls and DNA sequences reveal a new species of Scinax (Anura: Hylidae) on the Pacific Lowlands of Ecuador". The matrix is in NEXUS format.</p> <p>Gene partition as arranged as follows (tRNAs are included as part of larger adjacent genes):</p> <p>12S RNA: 1-1033</p> <p>16S RNA: 1034-2832</p> <p>NADH dehydrogenase subunit 1: 2833-3793</p> <p>Cytochrome Oxidase sub-unit I: 3965-4654</p> <p>Cytochrome B: 4655-5447</p> <p> </p>
Human variant calling data
<p>Short read data from the exome of chromosome 22 of a single human individual. There are one million 76bp reads in the dataset, produced on an Illumina GAIIx from exome-enriched DNA. This data was generated as part of the 1000 Genomes project.</p>
Mutation Calls from the TCGA MC3 project (filtered)
<p>The Cancer Genome Atlas (TCGA) cancer genomics dataset includes over 10,000 tumor-normal exome pairs across 33 different cancer types, in total >400 TB of raw data files requiring analysis. Here we describe the Multi-Center Mutation Calling in Multiple Cancers project, our effort to generate a comprehensive encyclopedia of somatic mutation calls for the TCGA data to enable robust cross-tumor-type analyses. Our approach accounts for variance and batch effects introduced by the rapid advancement of DNA extraction, hybridization-capture, sequencing, and analysis methods over time. We present best practices for applying an ensemble of seven mutation-calling algorithms with scoring and artifact filtering. The dataset created by this analysis includes 3.5 million somatic variants and forms the basis for PanCan Atlas papers. The results have been made available to the research community along with the methods used to generate them.</p> <p>This dataset was filtered for the 2018 PanCancer analysis, according to the methods specified in Bailey, Tokheim, Porta-Pardo et al, 2018 ( http://dx.doi.org/10.1016/j.cell.2018.02.060 )</p> <p> </p>
VCF File containg replicate RAD-seq genotype calls for four Populs alba x Populus tremula hybrids.
<p>VCF file used to estimate RAD-seq genotyping errors in Bresadola et al. (2019).</p>
Crab Eating Macaque SNP Calls VCF
<p>Bgzipped vcf and tabix index files of crab eating macaque SNP calls of 26 individuals on the macFas5 assembly.</p>
Rhesus Macaque SNP Calls VCF
<p>Bgzipped vcf and tabix index files of rhesus macaque SNP calls of 526 individuals on the rheMac8 assembly.</p>
NGSAP-VC : Genomic Variant Calling as an Installable GALAXY Workflow Using NGS data.
<p>Implementation of genomic variants calling as an installable GALAXY workflows using NGS data. Repository contains two separate sets of simulated ebola test data. One for SNPs and INDELs calling and another for Structural Variants calling.</p>
Figure 18 in First results of a faunistic survey on the Orthoptera of Jadovnik Mountain, southwestern Serbia, with data on the calling songs of some bush cricket species
Figure 18. Stenobothrus rubicundulus (male).
Figure 14 in First results of a faunistic survey on the Orthoptera of Jadovnik Mountain, southwestern Serbia, with data on the calling songs of some bush cricket species
Figure 14. SEM image of the stridulatory file in Psorodonotus macedonicus, Sopotnica Waterfalls.
Figure 12 in First results of a faunistic survey on the Orthoptera of Jadovnik Mountain, southwestern Serbia, with data on the calling songs of some bush cricket species
Figure 12. Metrioptera brachyptera (male).
Figure 17 in First results of a faunistic survey on the Orthoptera of Jadovnik Mountain, southwestern Serbia, with data on the calling songs of some bush cricket species
Figure 17. Galvagniella albanica (male).
Figure 9 in First results of a faunistic survey on the Orthoptera of Jadovnik Mountain, southwestern Serbia, with data on the calling songs of some bush cricket species
Figure 9. Poecilimon pseudornatus (male).
Figure 6 in First results of a faunistic survey on the Orthoptera of Jadovnik Mountain, southwestern Serbia, with data on the calling songs of some bush cricket species
Figure 6. Locality: Ogoreljača–Mali Jadovnik (meadow).
Figure 15 in First results of a faunistic survey on the Orthoptera of Jadovnik Mountain, southwestern Serbia, with data on the calling songs of some bush cricket species
Figure 15. Tetrix bipunctata (female).
This is Our Thing - hunting calls
<p>Video of a performance of This is Our Thing (2024) using hunting calls made with cane and plastic membranes. </p> <p>This is Our Thing is a composition by Christian Ferlaino and Raymond MacDonald in co-creation with Cassandra Gulotta, Carlotta Costabile, Rossella Manieri, Simonetta Santoro, Anna Catanzaro and Benedetta Pagliaro. </p> <p>Performers: Christian Ferlaino, Cassandra Gulotta, Benedetta Pagliaro, Anna Catanzaro and Carlotta Costabile.</p> <p>The score is available at https://zenodo.org/records/11351624</p> <p>This piece is part of the research LoMus - Local Sound for a New Musicality. Enhancing Musical Participation through a Local Sonic Practice is a research project funded under the Marie Skłodowska Curie Action. LoMus investigates ways of expanding musical participation through the use of sounding objects and contemporary music techniques.</p>
The result of variants calling with the Japonica reference
<p>We used two major varities of the rice genome, Indica and Japonica, to build different variant calling models that differ in the composition of samples from the two varities. </p>
The result of variants calling with the Indica reference
<p>We used two major varities of the rice genome, Indica and Japonica, to build different variant calling models that differ in the composition of samples from the two varities.</p>
Data and code for "Decoding the chaffinch "rain" call: a specialized alarm signal for nest predation"
<p>Summary of the project : <br>The chaffinch *Fringilla coelebs* is a very common passerine in Europe. One of the chaffinche's vocalisations, called "rain-call", is very common and conspicuous, however, it's function is still not well understood. Three hypotheses have been postulated as to what chaffinches rain-call are for: (1) the rain-call could be used in territorial context by males as a substitute for the song when the bird is in stressful conditions, (2) the rain-call is an alarm call, and (3) the rain-call is a mate-directed signal for communication within the pair. We tested these three hypotheses using two playbacks and behavioural observations in the wild. <br>- In the first playback, we broadcasted rain-calls, chaffinch songs and the song of balckbirds as a control. We measured if chaffinch males reacted to rain-calls similarely to a simulated territorial intrusion. <br>- In the second playback, we simulated the presence of predators (hawk and crows, compared to a balckbird's song as a control) and observed if chaffinches started rain-calling. <br>- Third, we closely followed five chaffinch males in the field, and took good note of the social and environemental context of rain-calling behaviour. <br>We find that chaffinches did not react to rain-calls with the same agresive response than to territorial intrusion, wich does not support the hypothesis of a song substitute. We found that chaffinches started rain-calling consistently when we broadcasted predator calls, as well as when we saw real predators, which supports teh alarm call hypothesis. Finaly, we found that male chaffinches reain-called much more often when a femal chaffinch was around, which might hint that females are intended recievers of the rain-call alarm. <br>We provide here the complete dataset for all thre experiment as well as the R code used to run statistical analyses. Variables and software versions are described further.</p>
Food talk: 40-Hz fin whale calls are associated with prey biomass
<p>Animals use varied acoustic signals that play critical roles in their lives. Understanding the function of these signals may inform about key life-history processes relevant for conservation. In the case of fin whales (<em>Balaenoptera physalus</em>), that produce different call types associated with different behaviours, several hypotheses have emerged regarding call function, but the topic still remains in its infancy. Here, we investigate the potential function of two fin whale vocalizations, the song-forming 20-Hz call and the 40-Hz call, by examining their production in relation to season, year and prey biomass. Our results showed that the production of 20-Hz calls was strongly influenced by season, with a clear peak during the breeding months, and secondarily by year, likely due to changes in whale abundance. These results support the reproductive function of the 20-Hz song used as an acoustic display. Conversely, season and year had no effect on variation in 40-Hz calling rates, but prey biomass did. This is the first study linking 40-Hz call activity to prey biomass, supporting the previously suggested food-associated function of this call. Understanding the functions of animal signals can help identifying functional habitats and predict the negative effects of human activities with important implications for conservation.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.