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1,155 results for “loci”
Allele scores and frequencies of 66 microsatellite locus loci in Solenopsis geminata
<p>Allele scores and frequencies of 66 microsatellite loci in <em>Solenopsis geminata</em> samples were analyzed from 18 populations and 131 individuals.</p> <p>Eighteen populations were collected from South Korea, Laos, Myanmar, Thailand, and the United States.</p>
The phylogeny of Triticeae Dumort. (Poaceae): resolution and reticulation based on a genome-wide selection of nuclear loci.
<p>Chloroplast-genome and nuclear-locus phylogenetic datasets for the wheat tribe Triticeae.</p>
FIGURE 5. Maximum likelihood phylogenetic tree constructed with UCEs and exon loci dataset for the novel species P in A new species of Plumarella (Octocorallia: Calcaxonia: Primnoidae) from the Northeast Pacific, and the redescription of Plumarella longispina Kinoshita, 1908
FIGURE 5. Maximum likelihood phylogenetic tree constructed with UCEs and exon loci dataset for the novel species P. williamsi (in bold), the redescribed species P. longispina (in red), the related taxa and rooted to outgroup genera. ML bootstrap support values>70% are shown above branches.
Plasma metabolomic signatures for copy number variants and COVID-19 risk loci in Northern Finland Populations
<p>A MySQL database for metabolomic signatures for The Northern Finland Birth Cohorts, <strong>NFBC1966 </strong>and <strong>NFBC1986</strong>, a longitudinal research program based at the Medical Faculty, University of Oulu, Finland. This dataset is a supplement to the manuscript titlted "Plasma metabolomic signatures for copy number variants and COVID-19 risk loci in Northern Finland Populations"</p>
High-res Supplementary Figures: 37 human NAHRwhals sSV loci + apes
<p>Wolfram Höps, 27th July 2024</p> <p>This upload contains high-resolution versions of Supplementary Figures S15-S22 and S30-S32 of the manuscript titled "Impact and characterization of serial structural variations across humans and great apes"; Höps et al., 2024. </p> <p>Contact: wolfram.hoeps@gmail.com</p>
Primers designed for red deer microsatellite loci
<p>Primers designed for microsatellite loci in the red deer genome</p>
Microsatellite loci in the red deer genome
<p>Position of microsatellite motifs in the red deer genome. </p>
Genotype data of 14 nuclear microsatellite loci for 18 Quercus chenii populations in China
<p>This dataset includes genotype data of 14 nuclear microsatellite loci for 419 individuals of Quercus chenii from 18 natural populations in China.</p>
FUMA results for obesity and fat distribution loci
<p>Each (zipped) set of files includes all FUMA results for that particular GWAS (e.g., FUMA_job15513.whradjbmi.combined.zip contains the results for the WHRadjBMI GWAS in the combined sample). Additionally, the set of files includes a README explaining the analyses, and a params.config file explaining the parameters used for the FUMA run. </p> <p>Briefly, GWAS summary-level results were uploaded to FUMA, along with the loci (i.e., genomic windows) associated for that GWAS. SNPs were clumped at an LD (r2) threshold of 0.05. LD was calculated using the UK Biobank release 2 Europeans. FUMA results include:<br> - tissue enrichments performed using MAGMA (embedded in FUMA)<br> - gene set analyses<br> - annotation of associated SNPs<br> - eQTL mapping</p>
FIGURE 3 in Phylogenetic relationships among the Iranian Triticum diploid gene pool as inferred from the loci Acc1 and Pgk1
FIGURE 3. Comparison of partial sequences of Pgk1 gene from the Iranian wild diploid Triticum (haplotypes 1−3) and related species. Indels 1 and 2 occurred at positions 54−59 and 475−476, respectively. Indel 3 was found at positions 509−517. Indel 4 was occurred at positions 558−565. The positions of 29 nucleotide substitutions are indicated.
FIGURE 2 in Phylogenetic relationships among the Iranian Triticum diploid gene pool as inferred from the loci Acc1 and Pgk1
FIGURE 2. Comparison of partial sequences of Acc1 gene from the Iranian wild diploid Triticum (haplotypes 1−3) and its affinitive species. Indels 1 and 2 occurred at positions 210–211 and 581−628, respectively. The positions of 4 nucleotide substitutions are indicated.
FIGURE 1 in Phylogenetic relationships among the Iranian Triticum diploid gene pool as inferred from the loci Acc1 and Pgk1
FIGURE 1. Geographic distribution of the 3 haplotypes seen among the wild gene pool of diploid Triticum in Iran.
FIGURE 5 in Phylogenetic relationships among the Iranian Triticum diploid gene pool as inferred from the loci Acc1 and Pgk1
FIGURE 5. Phylogenetic relationships based on Pgk1 sequences among three Iranian haplotypes (1, 2 and 3) of wild diploid Triticum and related genera. This tree topology was obtained in both MP and BI analyses. Branch lengths are proportional to the mean number of substitutions per site as measured by the scale bar. Bayesian posterior probabilities and bootstrap values over 50% are shown above and below the branches, respectively. Sequences obtained from the NCBI are marked with the sequence accession numbers. Secale cereale and Hordeum vulgare sequences were defined as outgroups.
FIGURE 4 in Phylogenetic relationships among the Iranian Triticum diploid gene pool as inferred from the loci Acc1 and Pgk1
FIGURE 4. Phylogenetic relationships based on Acc1 sequences among three Iranian haplotypes (1, 2 and 3) of wild diploid Triticum and related genera. This tree topology was obtained in both MP and BI analyses. Branch lengths are proportional to the mean number of substitutions per site as measured by the scale bar. Bayesian posterior probabilities and bootstrap values over 50% are shown above and below the branches, respectively. Sequences obtained from the NCBI are marked with the sequence accession numbers. Secale cereale and Hordeum vulgare sequences were defined as outgroups.
FIGURE 1 in their loci classici and types
FIGURE 1. Grouped histograms showing, for each Italian region: a) the number of Italian endemics described there; b) the number of Italian endemics occurring there; c) the number of regional narrow endemics. Data concerning b) and c) come from Peruzzi et al. (2014) and online updates.
FIGURE 5 in Alanomyces, a new genus of Aplosporellaceae based on four loci phylogeny
FIGURE 5. Neighbour–Joining (NJ) phylogenetic tree of combined dataset of ITS–LSU–tef–βtub depicting the position of Alanomyces indica (MCC 1039) in order Botryosphaeriales. Bootstrap support of branches, indicated on the node, was obtained using 1000 replicates. Only statistically significant bootstrap values (≥50%) are indicated. Branch lengths are indicated as 0.01 substitutions per positions according to the scale bar underneath the tree. Number on right side of species name denotes the culture collection accession number.
FIGURE 3 in Alanomyces, a new genus of Aplosporellaceae based on four loci phylogeny
FIGURE 3. Temperature–growth relationship of Alanomyces indica (MCC 1039) on Malt Extract Agar (MEA), Czapek Dox Agar (CDA), Oat Meal Agar (OA), Potato Dextrose Agar (PDA), Potato Carrot Agar (PCA) (mm diam. of 7 d old colonies).
FIGURE 2 in Alanomyces, a new genus of Aplosporellaceae based on four loci phylogeny
FIGURE 2. Microscopic structures of Alanomyces indica (MCC 1039). A: Chlamydospores in chains. B: SEM of chlamydospores chain. C–D: DIC image of Spermatia at 1000 x. E: SEM of section of single locule of pycnidia. F: SEM of cylindrical spermatia. Bars: A 20 μm; B, C, D, E 10 μm; F 2 μm.
FIGURE 1 in Alanomyces, a new genus of Aplosporellaceae based on four loci phylogeny
FIGURE 1. Fruiting structures of Alanomyces indica (MCC 1039) A–C: Culture of Alanomyces indica with several neck–like pycnidia. D: SEM of large pycnidia. Bars: A–C 2000 μm; D 200 μm.
FIGURE 9 in An inventory of the names of native, non-endemic vascular plants described from Italy, their loci classici and types
FIGURE 9. Lectotype of the name Mandragora officinarum L., "Lipsiae ut Monspellii in horti" Herb. Burser IX: 26 (UPS). Reproduced under the terms of the Creative Commons Attribution License [CC BY 4.0] (http://creativecommons. org/licenses/by/4.0), Museum of Evolution, Uppsala University.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.