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Text-fig. 5. Original material of Peziza sulphurea (syntype L 910,261-594), the substrate and schema with location of six apothecia and two fragments of apothecia. Apothecia marked with numbers 1–3 were examined microscopically. in A Revision Of Trichopeziza Lizonii, T. Sulphurea And T. Violascens (Ascomycota, Helotiales) From The Herbarium Prm With Notes On Type Material Of Peziza Sulphurea
Text-fig. 5. Original material of Peziza sulphurea (syntype L 910,261-594), the substrate and schema with location of six apothecia and two fragments of apothecia. Apothecia marked with numbers 1–3 were examined microscopically.
Text-fig. 3. Rhinoppioides quadrituberculatus MIKO gen. et sp. nov. Above: assumed fragments of legs as seen in body cavity of holotype (Aa – in dorsal view, Ab – in ventral view) and paratype (B, only dorsal view available). Below: speculative reconstruction of legs, assumed segments leg IV in above rows (numbers 1, 3, 5, 7, 12, 13, 14), assumed segments of leg I below (numbers 6, 9, 10). Rest of the segments assumed to belong to legs II and III. Only trochanters III (nr. 8) and IV (nr. 7, 12) undoubtedly belonging to the new species. Bars indicating 50 µm, numbers indicate identity of segments. in Oribatid Mite Fossils From Quaternary And Pre-Quaternary Sediments In Slovenian Caves I.Two New Genera And Two New Species Of The Family Oppiidae From The Early Pleistocene
Text-fig. 3. Rhinoppioides quadrituberculatus MIKO gen. et sp. nov. Above: assumed fragments of legs as seen in body cavity of holotype (Aa – in dorsal view, Ab – in ventral view) and paratype (B, only dorsal view available). Below: speculative reconstruction of legs, assumed segments leg IV in above rows (numbers 1, 3, 5, 7, 12, 13, 14), assumed segments of leg I below (numbers 6, 9, 10). Rest of the segments assumed to belong to legs II and III. Only trochanters III (nr. 8) and IV (nr. 7, 12) undoubtedly belonging to the new species. Bars indicating 50 µm, numbers indicate identity of segments.
Text-fig. 5. Free living colonies, showing a mode of preservation which does not allow for precise determination but clearly exhibiting features characteristic for Smittipora and/or Cupuladria and/or Reusirella. (note the clear intrazooecial buds). Specimen deposited in NM Prague under number T 3319. A – imprint, B – counterpart to fig A. C – Specimen deposited in SNM under number Z 37724. Optic photography. Scale bar 1 mm. in The Priabonian Bryozoan-Decapod Association From The Borové Formation (The Ďurkovec Quarry, Ne Slovakia) And Its Palaeoecological Implications
Text-fig. 5. Free living colonies, showing a mode of preservation which does not allow for precise determination but clearly exhibiting features characteristic for Smittipora and/or Cupuladria and/or Reusirella. (note the clear intrazooecial buds). Specimen deposited in NM Prague under number T 3319. A – imprint, B – counterpart to fig A. C – Specimen deposited in SNM under number Z 37724. Optic photography. Scale bar 1 mm.
Text-fig. 4. Reteporella sp., deposited in NM Prague under number T 3318. A – Large colony suggesting very short transport. Scale bar 10 mm. Optic photography. B – the detail of branch showing the mode of preservation (no original skeleton preserved). Scale bar 1 mm. SEM photography (BSE detector). in The Priabonian Bryozoan-Decapod Association From The Borové Formation (The Ďurkovec Quarry, Ne Slovakia) And Its Palaeoecological Implications
Text-fig. 4. Reteporella sp., deposited in NM Prague under number T 3318. A – Large colony suggesting very short transport. Scale bar 10 mm. Optic photography. B – the detail of branch showing the mode of preservation (no original skeleton preserved). Scale bar 1 mm. SEM photography (BSE detector).
Text-fig. 7. rigid erect bryozoans. A – colony perhaps belonging to Metrarabdotos and/or Smittina, deposited in NM Prague under number T 3321. B – erect rigid cyclostomatous bryozoans belonging perhaps to the genus Hornera, deposited in NM Prague under number T 3322. C – colony perhaps belonging to Myriapora, deposited in NM Prague under number T 3323. All photographs were taken under the optic microscope, all scale bars 1 mm. in The Priabonian Bryozoan-Decapod Association From The Borové Formation (The Ďurkovec Quarry, Ne Slovakia) And Its Palaeoecological Implications
Text-fig. 7. rigid erect bryozoans. A – colony perhaps belonging to Metrarabdotos and/or Smittina, deposited in NM Prague under number T 3321. B – erect rigid cyclostomatous bryozoans belonging perhaps to the genus Hornera, deposited in NM Prague under number T 3322. C – colony perhaps belonging to Myriapora, deposited in NM Prague under number T 3323. All photographs were taken under the optic microscope, all scale bars 1 mm.
Text-fig. 6. Lunulites(?), deposited in NM Prague under number T 3320. A – optic (scale bar 1 mm) and B – SEM (BSE detector) photography (scale bar 100 µm) showing characters suggesting determination as Lunulites (square shape and linear arrangement of autozooecia, short cryptocyst and presence of vibracularia). in The Priabonian Bryozoan-Decapod Association From The Borové Formation (The Ďurkovec Quarry, Ne Slovakia) And Its Palaeoecological Implications
Text-fig. 6. Lunulites(?), deposited in NM Prague under number T 3320. A – optic (scale bar 1 mm) and B – SEM (BSE detector) photography (scale bar 100 µm) showing characters suggesting determination as Lunulites (square shape and linear arrangement of autozooecia, short cryptocyst and presence of vibracularia).
Text-fig. 3. CA climate charts for the Monte Tondo and Tossignano floras, showing climatic ranges of the Nearest Living Relatives of the fossil taxa with respect to MAT. Right-hand positoned large bold figures and shaded areas in each case indicate the Coexistence Interval, with the number of overlapping taxa being at a maximum. in Palaeoenvironmental Analysis Of The Messinian Macrofossil Floras Of Tossignano And Monte Tondo (Vena Del Gesso Basin, Romagna Apennines, Northern Italy)
Text-fig. 3. CA climate charts for the Monte Tondo and Tossignano floras, showing climatic ranges of the Nearest Living Relatives of the fossil taxa with respect to MAT. Right-hand positoned large bold figures and shaded areas in each case indicate the Coexistence Interval, with the number of overlapping taxa being at a maximum.
Text-fig. 2. Cracked chrysophycean-cysts and nest-like accumulation of the pennate diatom Gomphonema bohemicum REICHELT et FRICKE 1902 embedded in a bituminous and clayish matrix, SEM-photograph, sample Sf (no number), seam 1 roof. in Siliceous Microfossils From The Oligocene Tripoli-Deposit Of Seifhennersdorf
Text-fig. 2. Cracked chrysophycean-cysts and nest-like accumulation of the pennate diatom Gomphonema bohemicum REICHELT et FRICKE 1902 embedded in a bituminous and clayish matrix, SEM-photograph, sample Sf (no number), seam 1 roof.
Text-fig. 3. Simplified geological map of the Krkonoše Piedmont Basin (based on Blecha et al. 1997) with the palaeogeographic outline of the Rudník lake deposits. The site of Vrchlabí – road cut represents the complete Rudník "Horizon" sequence with record of various developmental stages of the lake. Numbers of sites are simplified. in Permian Fauna Of The Krkonoše Piedmont Basin (Bohemian Massif, Central Europe)
Text-fig. 3. Simplified geological map of the Krkonoše Piedmont Basin (based on Blecha et al. 1997) with the palaeogeographic outline of the Rudník lake deposits. The site of Vrchlabí – road cut represents the complete Rudník "Horizon" sequence with record of various developmental stages of the lake. Numbers of sites are simplified.
Text-fig. 4. Simplified geological map of the Krkonoše Piedmont Basin (based on Blecha et al. 1997) with the palaeogeographic outline of the Kalná lake deposits. Numbers of sites are simplified. in Permian Fauna Of The Krkonoše Piedmont Basin (Bohemian Massif, Central Europe)
Text-fig. 4. Simplified geological map of the Krkonoše Piedmont Basin (based on Blecha et al. 1997) with the palaeogeographic outline of the Kalná lake deposits. Numbers of sites are simplified.
Figure 4 in Review of unique odd chromosome-numbered underground rodent species of the Palearctic region: Ellobius lutescens Thomas 1897 (Rodentia: Cricetidae)
Figure 4. Dorsal (a), ventral (b), and lateral (c) views of cranium and lateral view (d) of mandible of an adult male Ellobius lutescens (Dicle University, Faculty of Science, Department of Biology, Zoology Lab. Mammal collection number 741, from 20 km south of Iğdır, Turkey).
Figure 2 in Review of unique odd chromosome-numbered underground rodent species of the Palearctic region: Ellobius lutescens Thomas 1897 (Rodentia: Cricetidae)
Figure 2. Photograph of an adult Ellobius lutescens from Iğdır, Turkey. Photograph by Y Coşkun, collected on 24 April 2013.
Fig, 1. A map of Singapore and southern Johor showing the sites examined (Ο) and the locations where Brachidontes striatulus was collected (•) (locations 7a and 11). The locations are numbered in order of ascending salinity, except location 7a; 1: Sungei Mandai, 0‰; 2: West Coast, 1‰; 3, Sungei Danga, 2‰; 4, Kim Seng Canal, 2‰; 5, Sungei Sekudai, 5‰; 6, Sungei Serangoon, 9‰; 7, Siglap Canal, 10‰; 7a, Siglap Canal, 20‰; 8, Kallang River, 11‰; 9, Upper Rochor Canal, 12‰; 10, Kallang River, 13‰; 11, Lower Rochor Canal, 16‰; 12, Sungei Senibong, 17‰; 13, Whampoa/Kallang River junction, 19‰; 14, Rochor Canal mouth, 19‰; 15, Sungei Sembawang, 20‰; 16, Sungei Pandan, 22‰; 17, Sungei Plentong, 22‰; 18, Lim Chu Kang Road end, 24‰; 19, Sungei Simpang, 24‰; 20, Sembawang Park, 25‰; 21, Causeway, 25‰; 22, Kranji bund, 25‰; 23, Stulang Laut, 26‰; 24, West Coast Drain 2, 27‰; 25, Singapore River, 27‰. in Brachidontes Striatulus (Bivalvia Mytilidae) Introduced Into Singapore
Fig, 1. A map of Singapore and southern Johor showing the sites examined (Ο) and the locations where Brachidontes striatulus was collected (•) (locations 7a and 11). The locations are numbered in order of ascending salinity, except location 7a; 1: Sungei Mandai, 0‰; 2: West Coast, 1‰; 3, Sungei Danga, 2‰; 4, Kim Seng Canal, 2‰; 5, Sungei Sekudai, 5‰; 6, Sungei Serangoon, 9‰; 7, Siglap Canal, 10‰; 7a, Siglap Canal, 20‰; 8, Kallang River, 11‰; 9, Upper Rochor Canal, 12‰; 10, Kallang River, 13‰; 11, Lower Rochor Canal, 16‰; 12, Sungei Senibong, 17‰; 13, Whampoa/Kallang River junction, 19‰; 14, Rochor Canal mouth, 19‰; 15, Sungei Sembawang, 20‰; 16, Sungei Pandan, 22‰; 17, Sungei Plentong, 22‰; 18, Lim Chu Kang Road end, 24‰; 19, Sungei Simpang, 24‰; 20, Sembawang Park, 25‰; 21, Causeway, 25‰; 22, Kranji bund, 25‰; 23, Stulang Laut, 26‰; 24, West Coast Drain 2, 27‰; 25, Singapore River, 27‰.
Fig. 1 in Phenological stages of a soybean crop affect the number of mating pairs and egg load in Rhyssomatus nigerrimus (Coleoptera: Curculionidae) females under natural conditions
Fig. 1. Effect of soybean crop phenological stages on matings per linear meter of Rhyssomatus nigerrimus pairs.Estimated values are 95% confidence intervals ±SE.
Fig. 2 in Phenological stages of a soybean crop affect the number of mating pairs and egg load in Rhyssomatus nigerrimus (Coleoptera: Curculionidae) females under natural conditions
Fig. 2. Effect of time of day on matings per linear meter of Rhyssomatus nigerrimus copulating in the R7 phenological stage in a soybean crop. Estimated values are 95% confidence intervals ±SE.
Unravelling the Dependence of Aptamer–Target Binding Orientation and Strength on Nucleotide Modification Size, Position, and Number: A Computational Case Study of TBA
<p>Data deposition for "Unravelling the Dependence of Aptamer–Target Binding Orientation and Strength on Nucleotide Modification Size, Position, and Number: A Computational Case Study of TBA" published in Nucleic Acids Research. Data includes custom paramaterized nucleobase residues for use in AMBER molecular dyanmics simulations. Initial structures and setup code along with starting structures for generation of simulations in AMBER (pmemd.cuda). A in-house "MD-Generator" script to create nessessary files with our select simulation settings. Lastly, also included are CPPTRAJ analysis commands and scripts with visualizion scripts for use in Pymol 2.5 and above. </p>
HIV-1 control in vivo is related to the number but not the fraction of infected cells with viral unspliced RNA
<p>In the absence of antiretroviral therapy (ART), a subset of individuals, termed HIV controllers, have levels of plasma viremia that are orders of magnitude lower than non-controllers who are at higher risk for HIV disease progression. In addition to having fewer infected cells resulting in fewer cells with HIV RNA, it is possible that lower levels of plasma viremia in controllers is due to a lower fraction of the infected cells having HIV-1 unspliced RNA (HIV usRNA) compared with non-controllers. To directly test this possibility, we used sensitive and quantitative single cell sequencing methods to compare the fraction of infected cells that contain one or more copies of HIV usRNA in peripheral blood mononuclear cells (PBMC) obtained from controllers and non-controllers. The fraction of infected cells containing HIV usRNA did not differ between the two groups. Rather, the levels of viremia were strongly associated with the total number of infected cells that had HIV usRNA, as reported by others, with controllers having 34-fold fewer infected cells per million PBMC. These results reveal for the first time that viremic control is not associated with a lower fraction of proviruses expressing HIV usRNA, unlike what is reported for elite controllers, but is only related to having fewer infected cells overall, maybe reflecting greater immune clearance of infected cells. Our findings show that proviral silencing is not a key mechanism for viremic control and will help to refine strategies towards achieving HIV remission without ART.</p>
FIGURE 1 in Paleontologia Electronica is still number one for new open access fossil species
FIGURE 1. Eekaulostomus cuevasae, an extinct armored trumpetfish, and the top open access fossil taxon of 2017 (Farke, 2017). Reproduced from Cantalice and Alvarado-Ortega (2016). 2. Illustration of trumpetfish from Brian Engh, http://dontmesswithdinosaurs.com.
Fig. 1 in Effect of Different Thermal Conditions on Biology and Number of Generations of Palpita forficifera (Lepidoptera: Crambidae)
Fig. 1. Survival curves for female (A) and male (B) survival of Palpita forficifera at different temperatures (10, 15, 20, 25, and 30 °C), 60 ± 10% relative air humidity, and 14:10 h (L:D) photoperiod. Curves followed by the same letters for each gender did not differ from one another by the log-rank test (Tms = mean time of survival).
Fig. 4 in Methods for collecting large numbers of exuviae from Coptotermes (Blattodea: Rhinotermitidae) termite colonies
Fig. 4. (A) Coptotermes gestroi workers under observation on a filter paper with a 0.05% Nile Blue A and deionized water solution in a Petri dish; (B) media pad with deionized water taped to the cover of the Petri dish; (C) plastic Petri dish used to hold recently molted termites and termites that acquired dye; (D) vial used to hold exuviae; and (E) plastic container lined with a paper towel moistened with deionized water.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.