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Modeling and Monitoring Submerged Prehistoric Sites during Offshore Sand Dredging and Implications for the Study of Early Holocene Coastal Occupation of Southern California
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Data from: Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction
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Data from: Lineage and latitudinal variation in Phragmites australis tolerance to herbivory: implications for invasion success
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Population structure and genetic differentiation in extant alligator snapping turtles (genus Macrochelys) with implications for taxonomy and conservation
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Vocal behavior in spotted seals (Phoca largha) and implications for passive acoustic monitoring
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Analytical dataset: Effects of climate variability on snowmelt and implications for organic matter in a high elevation lake
Few paired lake-watershed studies examine long term effects of climate on the ecosystem function of lakes in a hydrological context. We use thirty-two years of hydrological and biogeochemical data from a high-elevation site in the Sierra Nevada of California to characterize variation in snowmelt in relation to climate variability, and explore the impact on factors affecting phytoplankton biomass. The magnitude of accumulated winter snow, quantified through basin-wide estimates of snow water equivalent (SWE), was the most important climate factor controlling variation in the timing and rate of spring snowmelt. Variations in SWE and snowmelt led to significant differences in lake flushing rate, water temperature, and nitrate concentrations across years. On average in dry years, snowmelt started 25 days earlier and proceeded 7 mm/d slower, and the lake began the ice-free season with nitrate concentrations ~2 uM higher and water temperatures 9 C warmer than in wet years. Flushing rates in wet years were 2.5 times larger than dry years. Consequently, particulate organic matter concentrations, a proxy for phytoplankton biomass, were 5 – 6 uM higher in dry years. There was a temporal trend of increase in particulate organic matter across dry years that corresponded to lake warming independent of variation in SWE. These results suggest that phytoplankton biomass is increasing as a result of both interannual variability in precipitation and long term warming trends. Our study underscores the need to account for local-scale catchment variability that may affect the accumulation of winter snowpack when predicting climate responses in lakes.
FIGURE 18 in A molecular phylogenetic hypothesis for the Asian agamid lizard genus Phrynocephalus reveals discrete biogeographic clades implicated by plate tectonics
FIGURE 18. Highest maximum-likelihood tree (-ln = 8673.71) from the 2760 aligned nuclear RAG-1 DNA positions. The maximum-likelihood analysis chose one of the 62 equally parsimonious trees. Bootstrap values are presented above branches and comparative parsimony decay indices are presented below branches in bold (Macey 2005). Branches that appear in parsimony analyses have the parsimony decay index plotted. Branches with no parsimony cost but are not present in strict consensus trees are listed as a "0" decay value. Branches that conflict with the parsimony analysis have a negative decay value representing the number of parsimony steps cost to obtain the maximum-likelihood branch. Bold italic bootstraps are those that differ from parsimony analysis. A dash above a branch is one that had a bootstrap value above 50% in the parsimony analysis but does not in this analysis. Outgroups (Laudakia, Bufoniceps, and Trapelus), and Phrynocephalus clades and lineages previously identified are labeled to the right as A–M (clades that are broken are numbered).
PLATE VIII. Outgroup taxa and Phrynocephalus mimicry adaptations. (A) Laudakia caucasia; (B) habitat of A, Big Balkan Mountains, Turkmenistan; (C) Trapelus sanguinolentus; (D) habitat of C, Repetek, Karakum Desert, Turkmenistan; (E) P. turcomanus illustrating false large head with eyes on body-back; and (F) P. mystaceus illustrating false enlarged mouth with red capillary-beds. in A molecular phylogenetic hypothesis for the Asian agamid lizard genus Phrynocephalus reveals discrete biogeographic clades implicated by plate tectonics
PLATE VIII. Outgroup taxa and Phrynocephalus mimicry adaptations. (A) Laudakia caucasia; (B) habitat of A, Big Balkan Mountains, Turkmenistan; (C) Trapelus sanguinolentus; (D) habitat of C, Repetek, Karakum Desert, Turkmenistan; (E) P. turcomanus illustrating false large head with eyes on body-back; and (F) P. mystaceus illustrating false enlarged mouth with red capillary-beds.
PLATE VI in A molecular phylogenetic hypothesis for the Asian agamid lizard genus Phrynocephalus reveals discrete biogeographic clades implicated by plate tectonics
PLATE VI. Species of the northern Tibetan Plateau. (A) P. hongyuanensis; (B) habitat of A, near Waqên, northeastern Tibet in Sichuan Province; (C) P. roborowskii-1; (D) habitat of C, Chaka Depression, Qinghai Province; (E) P. vlangalii-1; and (F) habitat of E, near Heimahe, south side of Qinghai Lake, Qinghai Province.
FIGURE 4 in A molecular phylogenetic hypothesis for the Asian agamid lizard genus Phrynocephalus reveals discrete biogeographic clades implicated by plate tectonics
FIGURE 4. Strict consensus of three equally parsimonious trees of 4425 steps from the 1595 included (839 informative) aligned mitochondrial DNA positions. Bootstrap values are presented above branches and decay indices are presented below branches in bold. Outgroups (Laudakia, Bufoniceps, and Trapelus), and well-supported Phrynocephalus clades and lineages are identified to the right as A–M.
PLATE VII. Species of the low elevation deserts in China (A-D) and northern Caspian Basin in Russia (E-F). (A) P. przewalskii-3; (B) habitat of A, Shapatou (foreground), Yellow River, Gobi Desert, Ningxia; (C) P. salenskyi-1; (D) habitat of C, near Jimsar, Junggar Depression, Xinjiang; (E) P. guttatus; and (F) habitat of E, west side of Caspian Sea in Dagestan. in A molecular phylogenetic hypothesis for the Asian agamid lizard genus Phrynocephalus reveals discrete biogeographic clades implicated by plate tectonics
PLATE VII. Species of the low elevation deserts in China (A-D) and northern Caspian Basin in Russia (E-F). (A) P. przewalskii-3; (B) habitat of A, Shapatou (foreground), Yellow River, Gobi Desert, Ningxia; (C) P. salenskyi-1; (D) habitat of C, near Jimsar, Junggar Depression, Xinjiang; (E) P. guttatus; and (F) habitat of E, west side of Caspian Sea in Dagestan.
PLATE IV in A molecular phylogenetic hypothesis for the Asian agamid lizard genus Phrynocephalus reveals discrete biogeographic clades implicated by plate tectonics
PLATE IV. Small species inhabiting hard substrates in the Caspian Basin of Turkmenistan. (A) P. rossikowi; (B) habitat of A, along the Amu-Darya River; (C) P. raddei; (D) habitat of C, Karakum Desert, north of Ashkhabad; (E) P. bannikovi; and (F) habitat of E, Big Balkan Mountains.
PLATE III. Species of southern Tibet and soft substrate habitats in the Caspian Basin. (A) P. theobaldi; (B) habitat of A, near Yangbajain, north of Lhasa, southern Tibet; (C) P. sogdianus; (D) P. interscapularis; (E) P. mystaceus; and (F) habitat of D and E, Karakum Desert. north of Ashkhabad, Turkmenistan. in A molecular phylogenetic hypothesis for the Asian agamid lizard genus Phrynocephalus reveals discrete biogeographic clades implicated by plate tectonics
PLATE III. Species of southern Tibet and soft substrate habitats in the Caspian Basin. (A) P. theobaldi; (B) habitat of A, near Yangbajain, north of Lhasa, southern Tibet; (C) P. sogdianus; (D) P. interscapularis; (E) P. mystaceus; and (F) habitat of D and E, Karakum Desert. north of Ashkhabad, Turkmenistan.
PLATE V in A molecular phylogenetic hypothesis for the Asian agamid lizard genus Phrynocephalus reveals discrete biogeographic clades implicated by plate tectonics
PLATE V. Large species inhabiting hard substrates in the Caspian Basin of Turkmenistan (A-D) and Kazakhstan (E-F). (A) P. golubewii; (B) habitat of A, near Bami, southern edge of Karakum Desert; (C) P. turcomanus; (D) habitat of C, southern edge of Karakum Desert; (E) P. helioscopus; and (F) habitat of E, Barsakel'mes Island, Aral Sea.
PLATE II in A molecular phylogenetic hypothesis for the Asian agamid lizard genus Phrynocephalus reveals discrete biogeographic clades implicated by plate tectonics
PLATE II. Species of the Helmand Basin in Afghanistan and Iranian Plateau. (A) P. luteoguttatus; (B) P. clarkorum; (C) P. ornatus; (D) habitat of A and B, Registan Desert, Afghanistan; (E) P. scutulatus; and (F) habitat of E, near Khabr, southern Iran.
PLATE I in A molecular phylogenetic hypothesis for the Asian agamid lizard genus Phrynocephalus reveals discrete biogeographic clades implicated by plate tectonics
PLATE I. Species of the Arabian Peninsula and Iranian Plateau. (A) P. arabicus-2; (B) habitat of A, near Al Ashkhara, Oman; (C) P. longicaudatus; (D) habitat of C, near Al Hij, Bar Al Hikman Peninsula, Oman; (E) P. maculatus-2; and (F) habitat of E, near Sirjan, southern Iran.
Fig. 16 in Unveiling the morphology of the Oriental rare monotypic ant genus Opamyrma YAMANE, BUI & EGUCHI, 2008 (Hymenoptera: Formicidae: Leptanillinae) and its evolutionary implications, with first descriptions of the male, larva, tentorium, and sting apparatus
Fig. 16: Distribution map of Opamyrma hungvuong. Type locality, record by CHEN & al. (2017), and new records by the preset study are indicated by circle, square, and stars, respectively.
Fig. 14 in Unveiling the morphology of the Oriental rare monotypic ant genus Opamyrma YAMANE, BUI & EGUCHI, 2008 (Hymenoptera: Formicidae: Leptanillinae) and its evolutionary implications, with first descriptions of the male, larva, tentorium, and sting apparatus
Fig. 14: Larva of Opamyrma hungvuong, nontype (AKY05vii17-06, China, Guangxi). (A) Scanning electron microscope (SEM) image of body in lateral view; (B) transmitted light microscopy image of head in dorsal view; (C) SEM image of head in frontal view; (D) SEM image of head in lateral view; (E) SEM image of head in ventral view; (F) SEM image of abdominal terminus in lateral view. Abbreviations: Atn = antenna; Gl = galea; Lbp = labial palp; Lbr = labrum; Mdb = mandible; Mxp = maxillary palp.
Fig. 13 in Unveiling the morphology of the Oriental rare monotypic ant genus Opamyrma YAMANE, BUI & EGUCHI, 2008 (Hymenoptera: Formicidae: Leptanillinae) and its evolutionary implications, with first descriptions of the male, larva, tentorium, and sting apparatus
Fig. 13: Male genitalia of Opamyrma hungvuong, nontype (Dai19iii2019-029, Son La, Vietnam). (A) genital capsule in dorsal view; (B) genital capsule in ventral view; (C) abdominal sternite IX in ventral view; (D) cupula in ventral view; (E) left paramere with basiventral part of right paramere and cupula, in unfolded outer view; (F) left volsella in lateral view; (G) left penisvalva in lateral view. Abbreviations: Bm = basimere; Cu = cupula; Cs = cuspis; Dg = digitus; Lp = lateral apodeme; Pv = penisvalva; Spl = spinescent lobe; Spc = spiculum; Tm = telomere; Va = valvura.
Fig. 11 in Unveiling the morphology of the Oriental rare monotypic ant genus Opamyrma YAMANE, BUI & EGUCHI, 2008 (Hymenoptera: Formicidae: Leptanillinae) and its evolutionary implications, with first descriptions of the male, larva, tentorium, and sting apparatus
Fig. 11: Opamyrma hungvuong male, nontype (Dai19iii2019-029, Son La, Vietnam). (A) head in full-face view; (B) head and mesosoma in lateral view; (C) mouthparts in anteroventral view; (D) head and mesosoma in dorsal view; (E) petiole in lateral view; (F) metasoma in lateral view; (G) petiole in ventral view; (H) metasoma in dorsal view. Abbreviations: Atp = anterior tentorial pit; Lbp = labial palp; Lbr = labrum; Mdl = mandalus; Mxp = maxillary palp; Nt = notauli; Pl = parapsidal line; Pv = penisvalva; Tm = telomere; Tsl = tergosternal line.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.